UHGV-2057569 (vOTU-041662)

Viral Genome: UHGV-2057569

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2057569
vOTU ID	vOTU-041662
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029375\|Ga0243934_1000189\|provirus_84239_107575
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9792
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.73
Jumbo phage	No

Genome content
Genome length (bp)	23,337
GC content	41.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	87%
Average CDS length (bps)	508.65
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-2057569_1	UniRef90_B0G398	167.0	0	NMT1 domain-containing protein	N/A
eggNOG-mapper	UHGV-2057569_1	411461.DORFOR_00719	167.0	0	thiamine-containing compound biosynthetic process	N/A
Pfam	UHGV-2057569_1	PF09084	N/A	N/A	NMT1/THI5 like	NMT1
COG	UHGV-2057569_1	COG0715	N/A	N/A	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	N/A
PHROG	UHGV-2057569_2	phrog_14030	161.1	0	N/A	unknown function
UniRef90	UHGV-2057569_2	UniRef90_G5FC83	222.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-2057569_2	411461.DORFOR_00720	534.0	0	N/A	N/A
structural_annotation	UHGV-2057569_2	PF18342,NF041850,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_3	phrog_1129	76.5	2.3e-22	holin	lysis
UniRef90	UHGV-2057569_3	UniRef90_UPI001F15FE24	150.0	1.4013e-45	phage holin family protein	N/A
eggNOG-mapper	UHGV-2057569_3	411461.DORFOR_00721	178.0	0	N/A	N/A
Pfam	UHGV-2057569_3	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-2057569_3	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_4	phrog_1009	41.6	0.000000000018	N/A	unknown function
UniRef90	UHGV-2057569_4	UniRef90_A0A173RD60	171.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-2057569_4	742765.HMPREF9457_03364	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-2057569_5	411461.DORFOR_00723	90.9	9.75e-24	N/A	N/A
eggNOG-mapper	UHGV-2057569_6	742765.HMPREF9457_03366	179.0	0	N/A	N/A
structural_annotation	UHGV-2057569_6	PF07703,NF038114,COG5501	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_7	phrog_32322	73.8	1.7e-21	N/A	unknown function
UniRef90	UHGV-2057569_7	UniRef90_B0G3A4	213.0	0	Ig-like_bact domain-containing protein	N/A
eggNOG-mapper	UHGV-2057569_7	411461.DORFOR_00725	213.0	0	N/A	N/A
Pfam	UHGV-2057569_7	PF13754	N/A	N/A	N/A	Big_3_4
structural_annotation	UHGV-2057569_7	PF13754	N/A	N/A	N/A	N/A
KOfam	UHGV-2057569_8	K13276	80.6	1e-23	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-2057569_8	phrog_11157	241.6	0	N/A	unknown function
UniRef90	UHGV-2057569_8	UniRef90_B0G3A5	548.0	0	Big_13 domain-containing protein	N/A
eggNOG-mapper	UHGV-2057569_8	411461.DORFOR_00726	548.0	0	N/A	N/A
Pfam	UHGV-2057569_8	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-2057569_8	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
NCBIFam	UHGV-2057569_8	NF033510.3	N/A	N/A	Ca2+-stabilized repeat-containing adhesin	N/A
COG	UHGV-2057569_8	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-2057569_8	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2057569_9	411461.DORFOR_01181	120.0	1.3e-35	N/A	N/A
PHROG	UHGV-2057569_10	phrog_12931	102.8	1.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-2057569_10	411461.DORFOR_01180	197.0	0	N/A	N/A
eggNOG-mapper	UHGV-2057569_11	411461.DORFOR_00732	102.0	7.12e-26	N/A	N/A
KOfam	UHGV-2057569_12	K03733	208.9	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-2057569_12	phrog_1	157.8	0	integrase	integration and excision
UniRef90	UHGV-2057569_12	UniRef90_A0A1C5SV17	615.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-2057569_12	411461.DORFOR_00731	632.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-2057569_12	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-2057569_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2057569_12	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-2057569_12	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_14	phrog_25635	272.7	0	N/A	unknown function
eggNOG-mapper	UHGV-2057569_14	1280698.AUJS01000007_gene1050	288.0	0	N/A	N/A
structural_annotation	UHGV-2057569_14	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_15	phrog_538	207.0	0	minor tail protein	tail
UniRef90	UHGV-2057569_15	UniRef90_UPI001F3E20C1	501.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-2057569_15	1280698.AUJS01000007_gene1049	657.0	0	N/A	N/A
Pfam	UHGV-2057569_15	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-2057569_15	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_16	phrog_6900	257.6	0	tail length tape measure protein	tail
UniRef90	UHGV-2057569_16	UniRef90_A0A174L0T5	543.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2057569_16	1280698.AUJS01000007_gene1047	811.0	0	nuclear chromosome segregation	N/A
COG	UHGV-2057569_16	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2057569_16	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_17	phrog_1633	162.7	0	N/A	unknown function
UniRef90	UHGV-2057569_17	UniRef90_UPI00157064A0	145.0	1.56945e-42	N/A	N/A
eggNOG-mapper	UHGV-2057569_17	1280698.AUJS01000007_gene1046	243.0	0	N/A	N/A
Pfam	UHGV-2057569_17	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-2057569_17	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_18	phrog_1526	106.0	1.8e-31	N/A	unknown function
UniRef90	UHGV-2057569_18	UniRef90_A0A1Q8EF45	70.5	0.0000000000000686	N/A	N/A
eggNOG-mapper	UHGV-2057569_18	665950.HMPREF1025_02524	82.0	2.92e-19	N/A	N/A
PHROG	UHGV-2057569_19	phrog_117	171.2	0	major tail protein	tail
UniRef90	UHGV-2057569_19	UniRef90_A0A396L6W3	273.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2057569_19	1280698.AUJS01000007_gene1044	348.0	0	domain, Protein	N/A
COG	UHGV-2057569_19	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2057569_19	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_20	phrog_123	54.2	0.0000000000000027	tail terminator	connector
eggNOG-mapper	UHGV-2057569_20	1280698.AUJS01000007_gene1043	220.0	0	N/A	N/A
structural_annotation	UHGV-2057569_20	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_21	phrog_387	47.8	0.00000000000012	neck protein	connector
eggNOG-mapper	UHGV-2057569_21	908337.HMPREF9257_0534	50.4	0.000000266	N/A	N/A
PHROG	UHGV-2057569_22	phrog_501	90.9	1.1e-26	head closure Hc1	connector
eggNOG-mapper	UHGV-2057569_22	1280698.AUJS01000007_gene1041	231.0	0	N/A	N/A
structural_annotation	UHGV-2057569_22	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_23	phrog_137	109.5	1.6e-32	head-tail adaptor Ad1	connector
UniRef90	UHGV-2057569_23	UniRef90_A0A1C5Y9F2	191.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-2057569_23	1280698.AUJS01000007_gene1040	263.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-2057569_23	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-2057569_23	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_24	phrog_36603	139.2	8.89965e-42	N/A	unknown function
PHROG	UHGV-2057569_25	phrog_32396	145.9	5.46506e-44	N/A	unknown function
UniRef90	UHGV-2057569_25	UniRef90_UPI001961D35B	476.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-2057569_25	1280698.AUJS01000007_gene1038	572.0	0	Phage capsid family	N/A
structural_annotation	UHGV-2057569_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_26	phrog_233	121.3	2e-37	head scaffolding protein	head and packaging
UniRef90	UHGV-2057569_26	UniRef90_A0A0X8USY7	119.0	3.1e-31	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-2057569_26	1280698.AUJS01000007_gene1037	279.0	0	N/A	N/A
Pfam	UHGV-2057569_26	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-2057569_26	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_27	phrog_17688	346.5	0	N/A	unknown function
UniRef90	UHGV-2057569_27	UniRef90_R6SFU1	929.0	0	Putative phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2057569_27	1280698.AUJS01000007_gene1036	927.0	0	phage terminase, large subunit	N/A
COG	UHGV-2057569_27	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2057569_27	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_28	phrog_1865	64.5	1.2e-18	N/A	unknown function
structural_annotation	UHGV-2057569_28	PF07073,MF_00436,NF008636,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_29	phrog_37230	207.4	0	N/A	unknown function
PHROG	UHGV-2057569_30	phrog_2494	396.5	0	minor head protein	head and packaging
UniRef90	UHGV-2057569_30	UniRef90_UPI00156EC2C0	477.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-2057569_30	1280698.AUJS01000007_gene1034	473.0	0	cell adhesion	N/A
COG	UHGV-2057569_30	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_31	phrog_104	285.2	0	portal protein	head and packaging
UniRef90	UHGV-2057569_31	UniRef90_UPI001A9C29A4	576.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2057569_31	1280698.AUJS01000007_gene1033	804.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-2057569_31	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_32	phrog_338	103.6	2.4e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2057569_32	UniRef90_R6S8U5	250.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2057569_32	1280698.AUJS01000007_gene1032	249.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-2057569_32	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2057569_32	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-2057569_32	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_33	phrog_36	63.9	3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-2057569_33	UniRef90_R6S8T9	234.0	0	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-2057569_33	1280698.AUJS01000007_gene1031	136.0	1.75e-39	N/A	N/A
Pfam	UHGV-2057569_33	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-2057569_33	PF04545,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-2057569_34	phrog_7024	100.3	9.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-2057569_34	1286171.EAL2_c05730	56.6	0.00000000103	N/A	N/A
PHROG	UHGV-2057569_35	phrog_38110	188.3	0	N/A	unknown function
PHROG	UHGV-2057569_36	phrog_31991	201.1	0	N/A	unknown function
PHROG	UHGV-2057569_38	phrog_1384	106.7	2.2e-31	Mom-like DNA modification protein	other
UniRef90	UHGV-2057569_38	UniRef90_W1I6Y1	146.0	5.36978e-42	Uncultured bacterium extrachromosomal DNA RGI01389	N/A
eggNOG-mapper	UHGV-2057569_38	411461.DORFOR_01154	326.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-2057569_38	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
KOfam	UHGV-2057569_40	K07486	52.3	0.0000000000000097	K07486; transposase	N/A
PHROG	UHGV-2057569_40	phrog_2199	154.9	0	transposase	integration and excision
UniRef90	UHGV-2057569_40	UniRef90_A0A3A9GWE8	478.0	0	IS110 family transposase (Fragment)	N/A
eggNOG-mapper	UHGV-2057569_40	742765.HMPREF9457_03802	504.0	0	Transposase IS116/IS110/IS902 family	N/A
Pfam	UHGV-2057569_40	PF01548	N/A	N/A	Transposase	DEDD_Tnp_IS110
COG	UHGV-2057569_40	COG3547	N/A	N/A	Transposase	N/A