UHGV-2063241 (vOTU-079230)

Viral Genome: UHGV-2063241

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2063241
vOTU ID	vOTU-079230
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029382\|Ga0243901_1000087\|provirus_31038_65298
Associated BioSample	SAMN05971613
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.62 (High-quality)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9795
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.7
Jumbo phage	No

Genome content
Genome length (bp)	34,261
GC content	60.84%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	94%
Average CDS length (bps)	702.72
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.62)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2063241_1	K00763	418.0	0	pncB, NAPRT1; nicotinate phosphoribosyltransferase [EC:6.3.4.21]	N/A
PHROG	UHGV-2063241_1	phrog_448	51.2	0.0000000000000069	nicotinamide phosphoribosyl transferase	other
UniRef90	UHGV-2063241_1	UniRef90_C7H5R2	966.0	0	Nicotinate phosphoribosyltransferase	N/A
eggNOG-mapper	UHGV-2063241_1	748224.HMPREF9436_00123	991.0	0	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP	N/A
Pfam	UHGV-2063241_1	PF17767	N/A	N/A	Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain	NAPRTase_N
Pfam	UHGV-2063241_1	PF17956	N/A	N/A	Nicotinate phosphoribosyltransferase C-terminal domain	NAPRTase_C
NCBIFam	UHGV-2063241_1	NF006695.0	N/A	N/A	nicotinate phosphoribosyltransferase	N/A
COG	UHGV-2063241_1	COG1488	N/A	N/A	Nicotinic acid phosphoribosyltransferase	N/A
PHROG	UHGV-2063241_3	phrog_263	78.7	4.8e-23	holin	lysis
UniRef90	UHGV-2063241_3	UniRef90_A0A2A6ZGP9	122.0	1.5e-34	Phage holin	N/A
eggNOG-mapper	UHGV-2063241_3	748224.HMPREF9436_01413	116.0	3.96e-33	SPP1 phage holin	N/A
Pfam	UHGV-2063241_3	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-2063241_3	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-2063241_3	PF04688	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_4	phrog_1863	69.2	3.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-2063241_4	748224.HMPREF9436_01412	99.8	1.12e-26	N/A	N/A
KOfam	UHGV-2063241_5	K08640	105.6	7.7e-31	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-2063241_5	phrog_894	115.3	6.3e-34	endolysin	lysis
UniRef90	UHGV-2063241_5	UniRef90_A0A1C5NY12	252.0	0	Zinc D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-2063241_5	748224.HMPREF9436_03320	248.0	0	Peptidase M15	N/A
Pfam	UHGV-2063241_5	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-2063241_5	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2063241_5	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_6	phrog_2310	59.3	3.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-2063241_7	657322.FPR_13530	63.9	0.0000000521	domain, Protein	N/A
COG	UHGV-2063241_7	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_8	phrog_18110	74.7	8.6e-22	N/A	unknown function
UniRef90	UHGV-2063241_8	UniRef90_A0A1Y3TWK1	206.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-2063241_8	1280689.AUJC01000007_gene3306	89.0	2.62e-16	Phage minor structural protein	N/A
Pfam	UHGV-2063241_8	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2063241_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2063241_8	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-2063241_8	PF06605,PF18994,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_9	phrog_33	40.4	0.000000000062	distal tail protein Dit	tail
UniRef90	UHGV-2063241_9	UniRef90_R6N293	111.0	2.18e-26	Putative phage tail component domain protein	N/A
structural_annotation	UHGV-2063241_9	PF20753,PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_10	phrog_28775	143.0	1.99965e-42	tail length tape measure protein	tail
UniRef90	UHGV-2063241_10	UniRef90_A0A844DDD5	424.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-2063241_10	1492737.FEM08_12070	140.0	7.34e-32	tape measure	N/A
Pfam	UHGV-2063241_10	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-2063241_10	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-2063241_10	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-2063241_10	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_11	phrog_706	100.1	2e-29	N/A	unknown function
UniRef90	UHGV-2063241_11	UniRef90_A0A1C6B556	114.0	3.48e-28	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-2063241_11	663278.Ethha_0101	94.0	3.25e-21	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2063241_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2063241_11	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2063241_12	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_13	phrog_820	68.9	6.8e-20	major tail protein	tail
UniRef90	UHGV-2063241_13	UniRef90_A0A174M1L1	135.0	2.91e-36	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-2063241_13	748224.HMPREF9436_03330	161.0	0	N/A	N/A
structural_annotation	UHGV-2063241_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_14	phrog_3266	99.7	1.9e-29	tail completion	connector
UniRef90	UHGV-2063241_14	UniRef90_A0A6B4JS53	59.7	0.0000000166	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-2063241_14	718252.FP2_06620	124.0	2.39e-34	N/A	N/A
structural_annotation	UHGV-2063241_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_15	phrog_556	82.1	5.4e-24	minor head protein	head and packaging
UniRef90	UHGV-2063241_15	UniRef90_D4K441	92.8	3.28e-21	Minor capsid	N/A
eggNOG-mapper	UHGV-2063241_15	718252.FP2_06630	92.8	5.5e-22	Minor capsid protein	N/A
Pfam	UHGV-2063241_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2063241_15	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_16	phrog_3366	112.6	2.7e-33	N/A	unknown function
Pfam	UHGV-2063241_16	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-2063241_16	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_17	phrog_541	73.7	2.3e-21	head-tail adaptor	connector
PHROG	UHGV-2063241_18	phrog_267	114.2	1.2e-33	major head protein	head and packaging
UniRef90	UHGV-2063241_18	UniRef90_A0A4P8IA69	366.0	0	Phage capsid and scaffold	N/A
eggNOG-mapper	UHGV-2063241_18	748224.HMPREF9436_03335	528.0	0	N/A	N/A
structural_annotation	UHGV-2063241_18	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_19	phrog_194	76.2	5.6e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-2063241_19	UniRef90_D4K444	250.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-2063241_19	748224.HMPREF9436_03336	286.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-2063241_19	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2063241_19	PF06810	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2063241_20	PF10827	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_21	phrog_581	346.7	0	minor head protein	head and packaging
UniRef90	UHGV-2063241_21	UniRef90_A0A1C5NZK4	647.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-2063241_21	748224.HMPREF9436_03339	639.0	0	N/A	N/A
Pfam	UHGV-2063241_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2063241_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2063241_21	PF06152,PF12106	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_22	phrog_533	266.2	0	portal protein	head and packaging
UniRef90	UHGV-2063241_22	UniRef90_A0A7G9WF85	357.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2063241_22	718252.FP2_06700	664.0	0	N/A	N/A
Pfam	UHGV-2063241_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2063241_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-2063241_23	K06909	90.8	2e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2063241_23	phrog_2	116.8	3.4e-34	terminase large subunit	head and packaging
UniRef90	UHGV-2063241_23	UniRef90_A0A844EGH8	804.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2063241_23	1449050.JNLE01000003_gene3895	407.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2063241_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-2063241_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2063241_23	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_24	phrog_2412	89.4	3.7e-26	N/A	unknown function
UniRef90	UHGV-2063241_24	UniRef90_UPI000DE85101	68.2	0.00000000000596	stress-induced protein	N/A
eggNOG-mapper	UHGV-2063241_24	742738.HMPREF9460_02504	114.0	8.14e-31	N/A	N/A
PHROG	UHGV-2063241_25	phrog_36	57.4	3.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-2063241_25	UniRef90_A0A3E2U224	118.0	2.53e-31	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2063241_25	748224.HMPREF9436_01463	223.0	0	N/A	N/A
structural_annotation	UHGV-2063241_25	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-2063241_26	K01160	47.5	0.00000000000046	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2063241_26	phrog_140	95.2	7.2e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2063241_26	UniRef90_UPI00122CFAB3	242.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2063241_26	394503.Ccel_3302	146.0	1.7236e-43	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2063241_26	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2063241_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2063241_26	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-2063241_27	K07505	369.8	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-2063241_27	phrog_2597	1090.8	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2063241_27	UniRef90_A0A2A7AI73	1338.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-2063241_27	742738.HMPREF9460_01357	873.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-2063241_27	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-2063241_27	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-2063241_27	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-2063241_27	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-2063241_28	K17677	350.3	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-2063241_28	phrog_16	275.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2063241_28	UniRef90_A0A3A6K1C0	1000.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-2063241_28	610130.Closa_1369	768.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-2063241_28	mREase_IV_00005	142.8	2.79979e-42	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2063241_28	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2063241_28	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2063241_28	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2063241_28	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_29	phrog_2698	194.4	0	N/A	unknown function
UniRef90	UHGV-2063241_29	UniRef90_A0A291T9B6	292.0	0	N/A	N/A
eggNOG-mapper	UHGV-2063241_29	394503.Ccel_3308	132.0	3.49e-37	N/A	N/A
structural_annotation	UHGV-2063241_29	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_30	phrog_124	229.5	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2063241_30	UniRef90_UPI00122C2B12	570.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-2063241_30	645991.Sgly_0321	371.0	0	AAA domain	N/A
Pfam	UHGV-2063241_30	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-2063241_30	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-2063241_31	K03546	49.9	0.000000000000033	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-2063241_31	phrog_1499	456.3	0	N/A	unknown function
UniRef90	UHGV-2063241_31	UniRef90_A0A2A7AIJ9	693.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-2063241_31	641112.ACOK01000073_gene2873	486.0	0	domain protein	N/A
Pfam	UHGV-2063241_31	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-2063241_31	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2063241_31	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_32	phrog_1733	76.3	3.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-2063241_32	665956.HMPREF1032_03597	164.0	1.07003e-41	DNA binding	N/A
COG	UHGV-2063241_32	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2063241_32	PF03677	N/A	N/A	N/A	N/A
UniRef90	UHGV-2063241_33	UniRef90_UPI001D0E65C2	108.0	2.39e-28	N/A	N/A
Pfam	UHGV-2063241_33	PF12957	N/A	N/A	N/A	DUF3846
structural_annotation	UHGV-2063241_33	PF12957	N/A	N/A	N/A	N/A
UniRef90	UHGV-2063241_37	UniRef90_A0A2A7BGV7	76.3	1.58e-16	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-2063241_37	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-2063241_37	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-2063241_37	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2063241_39	phrog_373	80.9	2.1e-23	anti-repressor	transcription regulation
UniRef90	UHGV-2063241_39	UniRef90_UPI0012DF9177	84.3	1.34e-19	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2063241_39	748224.HMPREF9436_01449	125.0	4.48e-35	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-2063241_39	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-2063241_39	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-2063241_39	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-2063241_41	PF13601,MF_01819,TIGR03433,COG1695	N/A	N/A	N/A	N/A
KOfam	UHGV-2063241_43	K22300	49.7	0.00000000000008	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2063241_43	phrog_2967	42.6	0.000000000008	transcriptional regulator	transcription regulation
UniRef90	UHGV-2063241_43	UniRef90_E2ZIF0	192.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-2063241_43	748224.HMPREF9436_01444	192.0	0	N/A	N/A
Pfam	UHGV-2063241_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2063241_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2063241_43	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2063241_45	748224.HMPREF9436_01443	596.0	0	vancomycin resistance protein	N/A
COG	UHGV-2063241_45	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
KOfam	UHGV-2063241_46	K14059	161.4	0	int; integrase	N/A
PHROG	UHGV-2063241_46	phrog_1	145.1	6.19374e-43	integrase	integration and excision
UniRef90	UHGV-2063241_46	UniRef90_A0A316RZQ6	542.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-2063241_46	693746.OBV_25530	280.0	0	Phage integrase family	N/A
Pfam	UHGV-2063241_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2063241_46	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2063241_46	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A