UHGV-2075930 (vOTU-041651)

Viral Genome: UHGV-2075930

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2075930
vOTU ID	vOTU-041651
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029412\|Ga0243915_100638\|provirus_11694_50609
Associated BioSample	SAMN05971627
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.69 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.964
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.31
Jumbo phage	No

Genome content
Genome length (bp)	38,916
GC content	54.99%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	89%
Average CDS length (bps)	664.39
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.69)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2075930_1	K06223	229.8	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-2075930_1	phrog_56	190.6	0	DNA methyltransferase	other
UniRef90	UHGV-2075930_1	UniRef90_UPI001C3B62EA	371.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-2075930_1	411471.SUBVAR_06973	340.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-2075930_1	MTase_II_00039	137.6	1.8e-40	Type II methyltransferase	RM
Pfam	UHGV-2075930_1	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-2075930_1	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-2075930_1	PF02086,TIGR00571,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_2	phrog_13256	61.7	7.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-2075930_2	1226322.HMPREF1545_02800	54.7	0.00000000237	N/A	N/A
KOfam	UHGV-2075930_3	K21472	63.8	3.6e-18	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	N/A
PHROG	UHGV-2075930_3	phrog_14988	43.7	0.0000000000028	peptidase	other
UniRef90	UHGV-2075930_3	UniRef90_A0A2V2FF85	249.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-2075930_3	411471.SUBVAR_05145	236.0	0	heme binding	N/A
Pfam	UHGV-2075930_3	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-2075930_3	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-2075930_3	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
KOfam	UHGV-2075930_5	K00986	62.4	6.4e-18	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-2075930_5	phrog_1423	109.2	4.2e-32	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2075930_5	UniRef90_A0A348T010	705.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-2075930_5	657322.FPR_27160	382.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
COG	UHGV-2075930_5	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-2075930_5	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_6	phrog_17147	326.4	0	N/A	unknown function
eggNOG-mapper	UHGV-2075930_6	657322.FPR_27150	674.0	0	N/A	N/A
eggNOG-mapper	UHGV-2075930_7	411462.DORLON_00771	79.0	0.000000000000284	N/A	N/A
structural_annotation	UHGV-2075930_7	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_9	phrog_18725	44.2	0.0000000000029	N/A	unknown function
eggNOG-mapper	UHGV-2075930_9	1120746.CCNL01000014_gene2212	99.4	5.26e-25	N/A	N/A
PHROG	UHGV-2075930_10	phrog_13879	280.1	0	N/A	unknown function
eggNOG-mapper	UHGV-2075930_10	1120746.CCNL01000014_gene2107	330.0	0	N/A	N/A
structural_annotation	UHGV-2075930_10	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_11	phrog_1194	68.1	1.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-2075930_11	1120746.CCNL01000014_gene2106	161.0	0	N/A	N/A
structural_annotation	UHGV-2075930_11	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_12	phrog_1535	225.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2075930_12	665956.HMPREF1032_03628	191.0	0	domain protein	N/A
COG	UHGV-2075930_12	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_13	phrog_706	104.8	7.9e-31	N/A	unknown function
UniRef90	UHGV-2075930_13	UniRef90_UPI0013141117	232.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2075930_13	665956.HMPREF1032_03058	213.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2075930_13	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2075930_13	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_14	phrog_11299	92.3	4.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-2075930_14	665956.HMPREF1032_03059	119.0	2.6e-32	N/A	N/A
structural_annotation	UHGV-2075930_14	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_15	phrog_3099	151.5	4.2039e-45	N/A	unknown function
eggNOG-mapper	UHGV-2075930_15	411471.SUBVAR_06936	255.0	0	N/A	N/A
structural_annotation	UHGV-2075930_15	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_16	phrog_3266	42.3	0.00000000001	tail completion	connector
eggNOG-mapper	UHGV-2075930_16	693746.OBV_18140	181.0	0	N/A	N/A
structural_annotation	UHGV-2075930_16	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_17	phrog_556	48.7	0.00000000000014	minor head protein	head and packaging
UniRef90	UHGV-2075930_17	UniRef90_UPI001967B4B3	159.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-2075930_17	999411.HMPREF1092_03318	50.4	0.00000295	Minor capsid protein	N/A
Pfam	UHGV-2075930_17	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2075930_17	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2075930_18	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_21	phrog_422	213.8	0	major head protein	head and packaging
eggNOG-mapper	UHGV-2075930_21	693746.OBV_18090	334.0	0	N/A	N/A
structural_annotation	UHGV-2075930_21	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_22	phrog_194	82.3	7.4e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-2075930_22	UniRef90_A0A4R1QTK7	194.0	0	Minor structural protein GP20	N/A
eggNOG-mapper	UHGV-2075930_22	411471.SUBVAR_06994	221.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-2075930_22	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2075930_22	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_25	phrog_581	187.9	0	minor head protein	head and packaging
UniRef90	UHGV-2075930_25	UniRef90_UPI00196795ED	350.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-2075930_25	411471.SUBVAR_06995	544.0	0	N/A	N/A
Pfam	UHGV-2075930_25	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2075930_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2075930_25	PF06152,PF07737,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_26	phrog_533	172.4	0	portal protein	head and packaging
UniRef90	UHGV-2075930_26	UniRef90_D1PRG7	596.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-2075930_26	411471.SUBVAR_06996	596.0	0	N/A	N/A
structural_annotation	UHGV-2075930_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-2075930_28	K06909	377.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2075930_28	phrog_3717	151.0	5.60519e-45	terminase large subunit	head and packaging
UniRef90	UHGV-2075930_28	UniRef90_A0A6N8H4Y1	805.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2075930_28	411471.SUBVAR_06998	712.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2075930_28	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-2075930_28	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2075930_28	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2075930_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2075930_28	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-2075930_30	K02601	63.7	2.9e-18	nusG; transcription termination/antitermination protein NusG	N/A
PHROG	UHGV-2075930_30	phrog_6386	95.5	4.6e-28	transcription antiterminator	transcription regulation
UniRef90	UHGV-2075930_30	UniRef90_A0A6N8H0F4	319.0	0	NGN domain-containing protein	N/A
eggNOG-mapper	UHGV-2075930_30	411471.SUBVAR_07000	207.0	0	Transcription termination factor nusG	N/A
Pfam	UHGV-2075930_30	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-2075930_30	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-2075930_30	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_31	phrog_426	95.4	7.3e-28	terminase small subunit	head and packaging
UniRef90	UHGV-2075930_31	UniRef90_A0A6N8H2N8	366.0	0	N/A	N/A
eggNOG-mapper	UHGV-2075930_31	411471.SUBVAR_07001	322.0	0	N/A	N/A
Pfam	UHGV-2075930_31	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-2075930_31	PF11985	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_32	phrog_25462	97.8	7.4e-29	N/A	unknown function
UniRef90	UHGV-2075930_32	UniRef90_A0A6N8H1D3	180.0	0	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-2075930_32	742733.HMPREF9469_02885	87.8	5.34e-21	N/A	N/A
structural_annotation	UHGV-2075930_32	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_33	phrog_462	41.6	0.0000000000000012	lipoprotein	other
eggNOG-mapper	UHGV-2075930_33	411471.SUBVAR_07003	102.0	2.81e-26	N/A	N/A
PHROG	UHGV-2075930_34	phrog_836	55.9	5e-16	late transcriptional activator	transcription regulation
UniRef90	UHGV-2075930_34	UniRef90_A0A6N8H2N1	190.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-2075930_34	411471.SUBVAR_07004	132.0	7.81e-39	Mor transcription activator	N/A
Pfam	UHGV-2075930_34	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-2075930_34	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-2075930_34	PF08765,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_35	phrog_286	72.5	7.3e-21	N/A	unknown function
UniRef90	UHGV-2075930_35	UniRef90_A0A6N8H086	255.0	0	Regulatory protein GemA	N/A
eggNOG-mapper	UHGV-2075930_35	411471.SUBVAR_07005	229.0	0	N/A	N/A
Pfam	UHGV-2075930_35	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-2075930_35	PF06252	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_37	phrog_491	99.5	3.1e-29	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2075930_37	UniRef90_A0A6N3F7T2	224.0	0	Bacteriophage Mu Gam like protein	N/A
eggNOG-mapper	UHGV-2075930_37	411471.SUBVAR_07006	224.0	0	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-2075930_37	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
COG	UHGV-2075930_37	COG4396	N/A	N/A	Mu-like prophage host-nuclease inhibitor protein Gam	N/A
structural_annotation	UHGV-2075930_37	PF07352,COG4396	N/A	N/A	N/A	N/A
PHROG	UHGV-2075930_38	phrog_5671	90.4	1.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-2075930_38	293826.Amet_0399	106.0	7.51e-28	N/A	N/A
KOfam	UHGV-2075930_40	K07132	111.7	6.6e-33	MuB; ATP-dependent target DNA activator	N/A
PHROG	UHGV-2075930_40	phrog_296	152.3	4.2039e-45	DNA transposition protein	integration and excision
UniRef90	UHGV-2075930_40	UniRef90_A0A6N8H4X2	536.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-2075930_40	411471.SUBVAR_07009	514.0	0	AAA domain	N/A
Pfam	UHGV-2075930_40	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-2075930_40	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
PHROG	UHGV-2075930_41	phrog_310	355.0	0	transposase	integration and excision
UniRef90	UHGV-2075930_41	UniRef90_A0A6N8H399	1086.0	0	MerR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2075930_41	411471.SUBVAR_07010	1026.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-2075930_41	TnsB_0_V-K	47.8	0.00000000000017	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-2075930_41	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-2075930_41	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-2075930_41	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-2075930_46	UniRef90_UPI000AE5279C	89.4	7.27e-22	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-2075930_46	1232446.BAIE02000002_gene796	62.0	0.00000000000778	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2075930_46	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-2075930_46	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2075930_48	1235790.C805_03665	55.8	0.000000166	N/A	N/A
COG	UHGV-2075930_48	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
PHROG	UHGV-2075930_49	phrog_12156	195.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2075930_49	UniRef90_UPI001C3BB96D	823.0	0	Putative DNA binding domain-containing protein	N/A
eggNOG-mapper	UHGV-2075930_49	1384065.JAGS01000001_gene3244	570.0	0	Putative DNA-binding domain	N/A
Pfam	UHGV-2075930_49	PF04326	N/A	N/A	Schlafen, AlbA_2	SLFN_AlbA_2
Pfam	UHGV-2075930_49	PF13749	N/A	N/A	Putative ATP-dependent DNA helicase recG C-terminal	HATPase_c_4
Pfam	UHGV-2075930_49	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
COG	UHGV-2075930_49	COG2865	N/A	N/A	Predicted transcriptional regulator, contains HTH domain	N/A
structural_annotation	UHGV-2075930_49	PF04703,MF_01819,NF033788,NF033091,COG2865	N/A	N/A	N/A	N/A
KOfam	UHGV-2075930_50	K22300	51.8	0.000000000000019	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2075930_50	phrog_8	44.1	0.0000000000048	transcriptional regulator	transcription regulation
UniRef90	UHGV-2075930_50	UniRef90_A0A1Q6KS88	325.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2075930_50	1232453.BAIF02000039_gene3532	159.0	0	N/A	N/A
Pfam	UHGV-2075930_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2075930_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2075930_50	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-2075930_51	UniRef90_A0A1T4Y0J5	154.0	0	DNA binding domain-containing protein, excisionase family	N/A
eggNOG-mapper	UHGV-2075930_51	411471.SUBVAR_06580	100.0	1.15e-26	Helix-turn-helix domain	N/A
Pfam	UHGV-2075930_51	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
eggNOG-mapper	UHGV-2075930_52	411471.SUBVAR_06583	63.2	0.000000000917	Relaxase/Mobilisation nuclease domain	N/A
COG	UHGV-2075930_52	COG3843	N/A	N/A	Type IV secretory pathway, VirD2 component (relaxase)	N/A