UHGV-2079952 (vOTU-016928)

Viral Genome: UHGV-2079952

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2079952
vOTU ID	vOTU-016928
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029437\|Ga0242826_1000631\|provirus_3_31459
Associated BioSample	SAMN05545074
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.39 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9809
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.72
Jumbo phage	No

Genome content
Genome length (bp)	31,457
GC content	61.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	94%
Average CDS length (bps)	658.80
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88.39)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2079952_1	phrog_9534	256.2	0	head protein	head and packaging
UniRef90	UHGV-2079952_1	UniRef90_A0A2X0ZY62	84.7	0.0000000000000011	Phage structural protein, truncation	N/A
eggNOG-mapper	UHGV-2079952_1	748224.HMPREF9436_00702	296.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-2079952_1	PF21567	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_2	phrog_538	147.6	7.28675e-44	minor tail protein	tail
UniRef90	UHGV-2079952_2	UniRef90_UPI001C0C4E4F	67.0	0.0000000105	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-2079952_2	748224.HMPREF9436_03324	161.0	4.48416e-44	N/A	N/A
Pfam	UHGV-2079952_2	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-2079952_2	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_3	phrog_33	55.9	9.8e-16	distal tail protein Dit	tail
UniRef90	UHGV-2079952_3	UniRef90_A0A564T4N7	390.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2079952_3	748224.HMPREF9436_00700	430.0	0	Phage tail protein	N/A
structural_annotation	UHGV-2079952_3	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_4	phrog_28775	285.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2079952_4	748224.HMPREF9436_00699	1047.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-2079952_4	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_5	phrog_1633	52.1	0.000000000000012	N/A	unknown function
PHROG	UHGV-2079952_6	phrog_1526	75.5	5.7e-22	N/A	unknown function
UniRef90	UHGV-2079952_6	UniRef90_F3MWB0	62.0	0.000000000105	N/A	N/A
PHROG	UHGV-2079952_7	phrog_117	181.7	0	major tail protein	tail
UniRef90	UHGV-2079952_7	UniRef90_E2ZGB2	296.0	0	Prophage LambdaSa1, structural protein	N/A
eggNOG-mapper	UHGV-2079952_7	748224.HMPREF9436_00696	296.0	0	domain, Protein	N/A
COG	UHGV-2079952_7	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2079952_7	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_8	phrog_123	62.1	1e-17	tail terminator	connector
eggNOG-mapper	UHGV-2079952_8	748224.HMPREF9436_00695	110.0	6.83e-30	N/A	N/A
structural_annotation	UHGV-2079952_8	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_9	phrog_387	49.3	0.000000000000064	neck protein	connector
eggNOG-mapper	UHGV-2079952_9	748224.HMPREF9436_00694	142.0	6.93643e-43	N/A	N/A
PHROG	UHGV-2079952_10	phrog_501	76.1	4.4e-22	head closure Hc1	connector
UniRef90	UHGV-2079952_10	UniRef90_R6CEU4	123.0	2.85e-34	N/A	N/A
eggNOG-mapper	UHGV-2079952_10	748224.HMPREF9436_00693	189.0	0	N/A	N/A
structural_annotation	UHGV-2079952_10	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_11	phrog_137	67.4	1.8e-19	head-tail adaptor Ad1	connector
UniRef90	UHGV-2079952_11	UniRef90_E2ZGA8	220.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-2079952_11	762211.BSTEL_0628	52.8	0.000000527	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-2079952_11	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_12	phrog_267	103.3	2.2e-30	major head protein	head and packaging
UniRef90	UHGV-2079952_12	UniRef90_A0A4P8IA69	382.0	0	Phage capsid and scaffold	N/A
eggNOG-mapper	UHGV-2079952_12	748224.HMPREF9436_03335	437.0	0	N/A	N/A
structural_annotation	UHGV-2079952_12	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_13	phrog_194	76.4	4.7e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-2079952_13	UniRef90_D4K444	233.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-2079952_13	748224.HMPREF9436_03336	234.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-2079952_13	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2079952_13	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_14	phrog_3675	91.0	7e-27	N/A	unknown function
UniRef90	UHGV-2079952_14	UniRef90_A0A0E4H649	100.0	3.48e-25	YjcQ protein	N/A
eggNOG-mapper	UHGV-2079952_14	1120978.KB894082_gene1061	112.0	7.86e-31	YjcQ protein	N/A
Pfam	UHGV-2079952_14	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-2079952_14	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_16	phrog_193	122.4	3.2e-36	head maturation protease	head and packaging
UniRef90	UHGV-2079952_16	UniRef90_A0A6N8H118	317.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-2079952_16	748224.HMPREF9436_01469	362.0	0	N/A	N/A
COG	UHGV-2079952_16	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-2079952_17	phrog_104	212.7	0	portal protein	head and packaging
UniRef90	UHGV-2079952_17	UniRef90_A0A3E2U200	768.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2079952_17	748224.HMPREF9436_01468	802.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-2079952_17	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_18	phrog_9	163.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-2079952_18	UniRef90_UPI001F1A3C47	615.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-2079952_18	748224.HMPREF9436_01467	807.0	0	phage terminase, large subunit	N/A
Pfam	UHGV-2079952_18	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-2079952_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2079952_18	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-2079952_19	UniRef90_R6GFM0	88.2	5.27e-21	Conserved domain protein	N/A
structural_annotation	UHGV-2079952_19	PF19962	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_20	phrog_338	58.4	1.5e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2079952_20	UniRef90_UPI0015F33F36	207.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2079952_20	748224.HMPREF9436_01465	223.0	0	N/A	N/A
structural_annotation	UHGV-2079952_20	PF01844	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_21	phrog_36	53.9	0.0000000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-2079952_21	UniRef90_A0A3E2U224	123.0	1.92e-33	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2079952_21	748224.HMPREF9436_01463	223.0	0	N/A	N/A
structural_annotation	UHGV-2079952_21	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-2079952_22	K01160	47.1	0.00000000000063	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2079952_22	phrog_140	95.3	6.5e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2079952_22	UniRef90_UPI00122CFAB3	243.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2079952_22	394503.Ccel_3302	145.0	6.71222e-43	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2079952_22	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2079952_22	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2079952_22	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_23	phrog_2597	40.0	0.000000000032	DNA primase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2079952_23	742738.HMPREF9460_01357	88.2	4.91e-19	Primase C terminal 2 (PriCT-2)	N/A
COG	UHGV-2079952_23	COG3598	N/A	N/A	RecA-family ATPase	N/A
KOfam	UHGV-2079952_24	K07505	339.5	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-2079952_24	phrog_2597	1015.0	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2079952_24	UniRef90_A0A2A6Z731	1182.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-2079952_24	610130.Closa_1370	779.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-2079952_24	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-2079952_24	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-2079952_24	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-2079952_24	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-2079952_25	K17677	349.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-2079952_25	phrog_16	273.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2079952_25	UniRef90_A0A3A6K1C0	994.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-2079952_25	610130.Closa_1369	768.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-2079952_25	mREase_IV_00005	140.5	1.40004e-41	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2079952_25	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2079952_25	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2079952_25	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2079952_25	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_26	phrog_2698	194.6	0	N/A	unknown function
UniRef90	UHGV-2079952_26	UniRef90_A0A291T9B6	291.0	0	N/A	N/A
eggNOG-mapper	UHGV-2079952_26	394503.Ccel_3308	132.0	4.94e-37	N/A	N/A
structural_annotation	UHGV-2079952_26	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_27	phrog_124	230.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2079952_27	UniRef90_UPI00122C2B12	576.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-2079952_27	645991.Sgly_0321	369.0	0	AAA domain	N/A
Pfam	UHGV-2079952_27	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-2079952_27	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-2079952_28	K03546	59.1	5.8e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-2079952_28	phrog_1499	468.8	0	N/A	unknown function
UniRef90	UHGV-2079952_28	UniRef90_A0A3A6KBP8	755.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-2079952_28	1235798.C817_04766	491.0	0	AAA ATPase domain	N/A
Pfam	UHGV-2079952_28	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-2079952_28	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2079952_28	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-2079952_29	phrog_1733	73.8	2e-21	N/A	unknown function
eggNOG-mapper	UHGV-2079952_29	665956.HMPREF1032_03597	165.0	1.07999e-40	DNA binding	N/A
COG	UHGV-2079952_29	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2079952_29	PF03677	N/A	N/A	N/A	N/A
UniRef90	UHGV-2079952_30	UniRef90_UPI001D0E65C2	159.0	0	N/A	N/A
structural_annotation	UHGV-2079952_30	PF12957	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2079952_32	PF12270,NF040944	N/A	N/A	N/A	N/A
UniRef90	UHGV-2079952_34	UniRef90_A0A2A7BGV7	76.3	1.58e-16	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-2079952_34	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-2079952_34	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-2079952_34	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2079952_36	1519439.JPJG01000059_gene1909	64.3	0.000000000000764	N/A	N/A
structural_annotation	UHGV-2079952_40	PF13601,MF_01819,TIGR03433,COG1695	N/A	N/A	N/A	N/A
KOfam	UHGV-2079952_42	K22300	51.0	0.000000000000031	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2079952_42	phrog_2967	41.3	0.000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-2079952_42	UniRef90_E2ZIF0	196.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-2079952_42	748224.HMPREF9436_01444	196.0	0	N/A	N/A
Pfam	UHGV-2079952_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2079952_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2079952_42	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2079952_44	748224.HMPREF9436_01443	593.0	0	vancomycin resistance protein	N/A
COG	UHGV-2079952_44	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
KOfam	UHGV-2079952_45	K14059	161.5	0	int; integrase	N/A
PHROG	UHGV-2079952_45	phrog_1	143.7	1.60028e-42	integrase	integration and excision
UniRef90	UHGV-2079952_45	UniRef90_A0A316RZQ6	540.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-2079952_45	693746.OBV_25530	280.0	0	Phage integrase family	N/A
Pfam	UHGV-2079952_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2079952_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2079952_45	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A