UHGV-2088656 (vOTU-096934)

Viral Genome: UHGV-2088656

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2088656
vOTU ID	vOTU-096934
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029480\|Ga0244079_100139\|provirus_84000_114888
Associated BioSample	SAMEA3708484
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.43 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9703
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.86
Jumbo phage	No

Genome content
Genome length (bp)	30,889
GC content	42.24%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	92%
Average CDS length (bps)	509.20
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2088656_1	K14059	185.5	0	int; integrase	N/A
PHROG	UHGV-2088656_1	phrog_1	186.7	0	integrase	integration and excision
UniRef90	UHGV-2088656_1	UniRef90_A0A564WTT7	707.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-2088656_1	411902.CLOBOL_02558	440.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2088656_1	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-2088656_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2088656_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2088656_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2088656_1	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-2088656_2	UniRef90_A0A414EGB5	173.0	0	N/A	N/A
eggNOG-mapper	UHGV-2088656_2	718252.FP2_11360	152.0	0	N/A	N/A
Pfam	UHGV-2088656_2	PF13711	N/A	N/A	N/A	DUF4160
eggNOG-mapper	UHGV-2088656_3	457412.RSAG_01053	137.0	4.11001e-41	N/A	N/A
KOfam	UHGV-2088656_6	K01356	155.4	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-2088656_6	phrog_4	127.1	1.5e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-2088656_6	UniRef90_R6QF53	262.0	0	Putative repressor LexA	N/A
eggNOG-mapper	UHGV-2088656_6	411490.ANACAC_00815	262.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-2088656_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-2088656_6	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-2088656_6	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2088656_6	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-2088656_7	UniRef90_UPI001BA6C09D	80.1	1.91e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2088656_7	1256908.HMPREF0373_00646	76.6	8.81e-18	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2088656_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2088656_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2088656_7	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_10	phrog_28292	117.4	4.4e-35	N/A	unknown function
UniRef90	UHGV-2088656_10	UniRef90_A0A8B3BZ84	128.0	1.94e-37	3-hydroxyacyl-CoA dehydrogenase	N/A
eggNOG-mapper	UHGV-2088656_10	500632.CLONEX_01438	113.0	4.12e-32	N/A	N/A
PHROG	UHGV-2088656_11	phrog_6058	59.9	1.3e-17	N/A	unknown function
UniRef90	UHGV-2088656_11	UniRef90_A0A374E7W1	203.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2088656_11	742740.HMPREF9474_02381	155.0	0	N/A	N/A
Pfam	UHGV-2088656_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2088656_11	PF01381,PF12728,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2088656_15	PF10922,TIGR03741	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2088656_17	NF011879	N/A	N/A	N/A	N/A
UniRef90	UHGV-2088656_18	UniRef90_R6RDX0	80.1	1.83e-18	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-2088656_19	phrog_2872	246.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2088656_19	UniRef90_UPI0015715A02	359.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-2088656_19	1256908.HMPREF0373_00658	328.0	0	AAA domain	N/A
Pfam	UHGV-2088656_19	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-2088656_19	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_20	phrog_18107	254.8	0	N/A	unknown function
eggNOG-mapper	UHGV-2088656_20	397290.C810_05167	235.0	0	N/A	N/A
structural_annotation	UHGV-2088656_20	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_21	phrog_3490	153.2	1.4013e-45	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2088656_21	UniRef90_R9KEE1	247.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-2088656_21	1256908.HMPREF0373_00660	259.0	0	N/A	N/A
Pfam	UHGV-2088656_21	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-2088656_21	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-2088656_22	K02316	72.1	8.7e-21	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-2088656_22	phrog_11992	127.4	1.2e-37	N/A	unknown function
UniRef90	UHGV-2088656_22	UniRef90_A0A3A6GSV7	277.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-2088656_22	861454.HMPREF9099_00351	124.0	1.08e-33	CHC2 zinc finger	N/A
PADLOC	UHGV-2088656_22	drt-UG29	45.6	0.00000000000052	DRT	DRT
Pfam	UHGV-2088656_22	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-2088656_22	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-2088656_22	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_23	phrog_8841	488.7	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2088656_23	UniRef90_A0A3A6GQS5	1026.0	0	N/A	N/A
eggNOG-mapper	UHGV-2088656_23	411460.RUMTOR_02070	505.0	0	N/A	N/A
Pfam	UHGV-2088656_23	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-2088656_23	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-2088656_23	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2088656_23	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-2088656_24	K15255	248.6	0	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	N/A
PHROG	UHGV-2088656_24	phrog_325	262.4	0	Dda-like helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2088656_24	UniRef90_A0A2V2D011	789.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-2088656_24	1121333.JMLH01000003_gene334	273.0	0	PIF1-like helicase	N/A
PADLOC	UHGV-2088656_24	cluster10	56.6	3.6e-19	RecD_0_IVD	CRISPR-CAS
Pfam	UHGV-2088656_24	PF05970	N/A	N/A	PIF1-like helicase	PIF1
COG	UHGV-2088656_24	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-2088656_24	PF05970,PF16277,MF_03176,TIGR01448,COG0507	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_26	phrog_17690	136.9	5.90003e-41	N/A	unknown function
eggNOG-mapper	UHGV-2088656_26	476272.RUMHYD_03925	208.0	0	N/A	N/A
structural_annotation	UHGV-2088656_27	PF17399	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2088656_28	760568.Desku_0913	50.1	0.00000108	N/A	N/A
PHROG	UHGV-2088656_31	phrog_10714	62.8	3.7e-18	N/A	unknown function
UniRef90	UHGV-2088656_31	UniRef90_R6PMU2	59.3	0.00000000194	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-2088656_31	537007.BLAHAN_05460	54.3	0.0000000229	N/A	N/A
KOfam	UHGV-2088656_32	K19779	43.1	0.0000000000067	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-2088656_32	phrog_599	59.1	1.1e-16	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2088656_32	UniRef90_UPI001D0735F7	51.2	0.000000278	Lar family restriction alleviation protein	N/A
Pfam	UHGV-2088656_32	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-2088656_32	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-2088656_32	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-2088656_32	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_34	phrog_6568	64.6	1.1e-18	N/A	unknown function
PHROG	UHGV-2088656_35	phrog_36	49.8	0.000000000000068	transcriptional regulator	transcription regulation
UniRef90	UHGV-2088656_35	UniRef90_A0A416Q281	201.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-2088656_35	1235798.C817_03486	182.0	0	N/A	N/A
structural_annotation	UHGV-2088656_35	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_37	phrog_2412	132.4	2.2e-39	N/A	unknown function
UniRef90	UHGV-2088656_37	UniRef90_UPI001E414EFE	215.0	0	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-2088656_37	742723.HMPREF9477_00912	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-2088656_38	742723.HMPREF9477_00911	120.0	2.8e-31	Phage terminase large subunit	N/A
COG	UHGV-2088656_38	COG1783	N/A	N/A	Phage terminase large subunit	N/A
KOfam	UHGV-2088656_39	K06909	80.2	3.1e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2088656_39	phrog_2	60.9	2.9e-17	terminase large subunit	head and packaging
UniRef90	UHGV-2088656_39	UniRef90_R6PMS4	649.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-2088656_39	411460.RUMTOR_02085	625.0	0	N/A	N/A
Pfam	UHGV-2088656_39	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-2088656_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2088656_39	PF17289,PF03237,MF_04145,TIGR01547,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_40	phrog_533	325.9	0	portal protein	head and packaging
UniRef90	UHGV-2088656_40	UniRef90_A0A174B716	807.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-2088656_40	658655.HMPREF0988_02564	788.0	0	N/A	N/A
structural_annotation	UHGV-2088656_40	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_41	phrog_581	313.2	0	minor head protein	head and packaging
UniRef90	UHGV-2088656_41	UniRef90_UPI001C03686D	708.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-2088656_41	1235799.C818_04219	402.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2088656_41	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2088656_41	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2088656_41	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_42	phrog_15041	120.0	5.8e-36	N/A	unknown function
eggNOG-mapper	UHGV-2088656_42	478749.BRYFOR_07608	53.1	0.0000000274	N/A	N/A
structural_annotation	UHGV-2088656_42	PF10827	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_43	phrog_355	61.0	1.6e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2088656_43	UniRef90_A0A396KGT7	204.0	0	N/A	N/A
eggNOG-mapper	UHGV-2088656_43	97138.C820_00250	131.0	1.68e-38	N/A	N/A
Pfam	UHGV-2088656_43	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-2088656_43	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_44	phrog_13199	99.8	1.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-2088656_44	476272.RUMHYD_02851	100.0	2.08e-27	N/A	N/A
PHROG	UHGV-2088656_45	phrog_194	111.5	9e-33	head scaffolding protein	head and packaging
UniRef90	UHGV-2088656_45	UniRef90_A5KPA4	306.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-2088656_45	658655.HMPREF0988_02561	311.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-2088656_45	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2088656_45	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_46	phrog_422	235.9	0	major head protein	head and packaging
eggNOG-mapper	UHGV-2088656_46	658655.HMPREF0988_02560	500.0	0	N/A	N/A
structural_annotation	UHGV-2088656_46	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_47	phrog_541	86.8	2.1e-25	head-tail adaptor	connector
UniRef90	UHGV-2088656_47	UniRef90_A0A371AQT0	81.3	2.89e-17	N/A	N/A
eggNOG-mapper	UHGV-2088656_47	642492.Clole_0822	59.7	0.00000000129	N/A	N/A
PHROG	UHGV-2088656_48	phrog_3366	85.0	8.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-2088656_48	999411.HMPREF1092_03319	53.1	0.000000601	N/A	N/A
Pfam	UHGV-2088656_48	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-2088656_48	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_49	phrog_556	65.6	6.8e-19	minor head protein	head and packaging
UniRef90	UHGV-2088656_49	UniRef90_UPI000930E2B9	189.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-2088656_49	411461.DORFOR_01170	120.0	3.32e-33	Minor capsid protein	N/A
Pfam	UHGV-2088656_49	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2088656_49	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_50	phrog_3266	86.3	2.7e-25	tail completion	connector
eggNOG-mapper	UHGV-2088656_50	663278.Ethha_0492	58.2	0.00000000974	N/A	N/A
structural_annotation	UHGV-2088656_50	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_51	phrog_820	86.0	3.7e-25	major tail protein	tail
UniRef90	UHGV-2088656_51	UniRef90_A0A412UWV6	246.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-2088656_51	411461.DORFOR_01172	227.0	0	N/A	N/A
structural_annotation	UHGV-2088656_51	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_52	phrog_4450	40.2	0.000000000051	N/A	unknown function
Pfam	UHGV-2088656_52	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-2088656_52	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_53	phrog_706	135.8	2.6e-40	N/A	unknown function
UniRef90	UHGV-2088656_53	UniRef90_A0A1C5ZNX7	207.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-2088656_53	1151292.QEW_4528	127.0	5.83e-34	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2088656_53	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2088656_53	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2088656_54	phrog_5493	196.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2088656_54	411470.RUMGNA_02228	389.0	0	tape measure	N/A
Pfam	UHGV-2088656_54	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-2088656_54	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-2088656_54	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-2088656_55	phrog_33	51.5	0.000000000000023	distal tail protein Dit	tail
UniRef90	UHGV-2088656_55	UniRef90_A0A3R6C171	184.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2088656_55	1235798.C817_02569	191.0	0	tail component	N/A
COG	UHGV-2088656_55	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2088656_55	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A