UHGV-2089400 (vOTU-010104)

Viral Genome: UHGV-2089400

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2089400
vOTU ID	vOTU-010104
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029465\|Ga0244121_100024\|provirus_12970_77361
Associated BioSample	SAMEA3708526
Viral genome confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.9 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	11
Recoded stop codon	No

Viral Content
geNomad score	0.9481
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.03
Jumbo phage	No

Genome content
Genome length (bp)	34,473
GC content	39.47%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	89%
Average CDS length (bps)	615.54
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-2089400_1	UniRef90_A0A2N0UVG0	327.0	0	CBM26 domain-containing protein	N/A
eggNOG-mapper	UHGV-2089400_1	33905.BTHE_1898	117.0	9.47e-30	Belongs to the glycosyl hydrolase 31 family	N/A
Pfam	UHGV-2089400_1	PF16738	N/A	N/A	Starch-binding module 26	CBM26
COG	UHGV-2089400_1	COG1501	N/A	N/A	Alpha-glucosidase/xylosidase, GH31 family	N/A
KOfam	UHGV-2089400_5	K00571	169.7	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-2089400_5	phrog_67	150.1	0	DNA methyltransferase	other
UniRef90	UHGV-2089400_5	UniRef90_A0A374DDR5	455.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-2089400_5	877240.E1AC06_9CAUD	247.0	0	helicase activity	N/A
PADLOC	UHGV-2089400_5	MTase_II_00157	164.9	0	Type II methyltransferase	RM
Pfam	UHGV-2089400_5	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-2089400_5	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-2089400_6	K01447	59.3	7.9e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2089400_6	phrog_20388	309.6	0	endolysin	lysis
UniRef90	UHGV-2089400_6	UniRef90_A0A374N1L8	557.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2089400_6	1203606.HMPREF1526_00253	317.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-2089400_6	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-2089400_6	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-2089400_6	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2089400_6	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_7	phrog_443	64.8	2.3e-18	holin	lysis
UniRef90	UHGV-2089400_7	UniRef90_R6R2Q3	90.1	2.22e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-2089400_7	1235797.C816_04172	81.6	8.66e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-2089400_7	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-2089400_7	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_8	phrog_1863	71.0	1.3e-21	N/A	unknown function
UniRef90	UHGV-2089400_8	UniRef90_UPI001F223E8B	91.3	1.9e-22	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-2089400_8	1203606.HMPREF1526_02027	82.4	9.85e-20	N/A	N/A
UniRef90	UHGV-2089400_10	UniRef90_A0A374N9Y2	219.0	0	N/A	N/A
structural_annotation	UHGV-2089400_10	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_11	phrog_1067	99.5	1.2e-29	minor head protein	head and packaging
UniRef90	UHGV-2089400_11	UniRef90_A0A1G5CPD2	147.0	7.62e-37	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-2089400_11	1462527.CCDM010000003_gene3730	62.8	0.000000114	gp58-like protein	N/A
Pfam	UHGV-2089400_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2089400_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2089400_11	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2089400_11	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_12	phrog_33	78.9	1.1e-22	distal tail protein Dit	tail
UniRef90	UHGV-2089400_12	UniRef90_A0A1G5CPA2	132.0	4.7e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-2089400_12	1160721.RBI_I01575	91.7	2.55e-19	Phage tail protein	N/A
COG	UHGV-2089400_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2089400_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-2089400_13	K20478	54.4	4.1e-16	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-2089400_13	phrog_5218	276.0	0	N/A	unknown function
UniRef90	UHGV-2089400_13	UniRef90_UPI000E474EFE	2098.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-2089400_13	908340.HMPREF9406_2570	280.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-2089400_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-2089400_13	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-2089400_13	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2089400_14	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_15	phrog_88	66.1	5.3e-19	major tail protein	tail
UniRef90	UHGV-2089400_15	UniRef90_A0A1G5CNS8	152.0	7.2307e-43	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-2089400_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-2089400_15	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-2089400_16	UniRef90_UPI000E5564A4	283.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2089400_16	1235792.C808_00089	52.0	0.00000159	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-2089400_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-2089400_16	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2089400_17	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_18	phrog_19734	70.7	1.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-2089400_18	86416.Clopa_0343	62.0	0.0000000000798	N/A	N/A
structural_annotation	UHGV-2089400_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_19	phrog_749	54.7	0.0000000000000016	N/A	unknown function
UniRef90	UHGV-2089400_19	UniRef90_A0A1G5CMX8	107.0	2.14e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-2089400_19	1211817.CCAT010000053_gene2133	60.1	0.000000000207	N/A	N/A
PHROG	UHGV-2089400_20	phrog_10	123.7	1.9e-36	major head protein	head and packaging
UniRef90	UHGV-2089400_20	UniRef90_UPI000E4BAA71	746.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-2089400_20	610130.Closa_0744	320.0	0	Phage capsid family	N/A
Pfam	UHGV-2089400_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2089400_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2089400_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2089400_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2089400_21	K01358	135.9	4.1e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2089400_21	phrog_94	203.1	0	head maturation protease	head and packaging
UniRef90	UHGV-2089400_21	UniRef90_A0A412ULU1	456.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2089400_21	86416.Clopa_0340	173.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2089400_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2089400_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2089400_21	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_22	phrog_12	94.1	1.1e-27	portal protein	head and packaging
UniRef90	UHGV-2089400_22	UniRef90_A0A412ULV9	710.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2089400_22	1415774.U728_1254	265.0	0	Phage portal protein	N/A
Pfam	UHGV-2089400_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-2089400_22	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-2089400_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2089400_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_23	phrog_9	295.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-2089400_23	UniRef90_A0A412UM03	1095.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-2089400_23	86416.Clopa_0337	634.0	0	Phage Terminase	N/A
Pfam	UHGV-2089400_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2089400_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2089400_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2089400_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_24	phrog_5110	81.9	5.3e-24	terminase small subunit	head and packaging
UniRef90	UHGV-2089400_24	UniRef90_A0A1M5U1D5	113.0	1.7e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-2089400_24	1211817.CCAT010000053_gene2128	100.0	4.45e-26	N/A	N/A
Pfam	UHGV-2089400_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-2089400_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_25	phrog_119	70.8	2e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2089400_25	UniRef90_A0A412ULY9	224.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2089400_25	1158607.UAU_01026	102.0	5.07e-27	HNH endonuclease	N/A
Pfam	UHGV-2089400_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2089400_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-2089400_26	431943.CKL_4074	52.0	0.00000166	N/A	N/A
structural_annotation	UHGV-2089400_26	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_27	phrog_3584	148.2	5.74532e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2089400_27	1235800.C819_00515	68.6	0.0000000000654	N/A	N/A
structural_annotation	UHGV-2089400_27	PF21578,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-2089400_31	UniRef90_UPI000E4DC4DA	135.0	5.33e-38	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-2089400_31	PF15597	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_32	phrog_2118	117.7	1.1e-34	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2089400_32	UniRef90_A0A374DVG7	247.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2089400_32	610130.Closa_0730	152.0	0	HNH endonuclease	N/A
Pfam	UHGV-2089400_32	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2089400_32	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-2089400_32	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_34	phrog_824	146.4	8.12753e-44	N/A	unknown function
UniRef90	UHGV-2089400_34	UniRef90_A0A3D3D6C6	243.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-2089400_34	397288.C806_00096	158.0	0	VRR_NUC	N/A
Pfam	UHGV-2089400_34	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-2089400_34	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_35	phrog_24518	84.1	1.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-2089400_35	1519439.JPJG01000077_gene922	110.0	2.29e-27	N/A	N/A
KOfam	UHGV-2089400_36	K03497	157.9	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-2089400_36	phrog_6218	246.2	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2089400_36	UniRef90_UPI000E47CAB6	853.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-2089400_36	1160721.RBI_I01596	234.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-2089400_36	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-2089400_36	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-2089400_36	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2089400_36	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2089400_40	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_41	phrog_6058	41.6	0.000000000013	N/A	unknown function
structural_annotation	UHGV-2089400_41	NF033787	N/A	N/A	N/A	N/A
UniRef90	UHGV-2089400_42	UniRef90_UPI0015F48AC0	180.0	0	Lar family restriction alleviation protein	N/A
Pfam	UHGV-2089400_42	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-2089400_42	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_43	phrog_8684	95.4	3.9e-29	N/A	unknown function
UniRef90	UHGV-2089400_43	UniRef90_UPI000E48855B	252.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-2089400_43	1450694.BTS2_0501	76.3	4.87e-16	YopX protein	N/A
Pfam	UHGV-2089400_43	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-2089400_43	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-2089400_43	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-2089400_44	K00390	99.5	3.6e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-2089400_44	phrog_424	124.1	1.1e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2089400_44	UniRef90_UPI001C034617	583.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-2089400_44	1408437.JNJN01000032_gene2312	337.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-2089400_44	BrxP_00001	84.0	1.2e-24	BrxP	BREX
Pfam	UHGV-2089400_44	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-2089400_44	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-2089400_44	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-2089400_46	UniRef90_UPI000E51362F	132.0	4.37e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2089400_46	411461.DORFOR_00030	50.8	0.000000123	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2089400_46	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-2089400_46	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_47	phrog_8	45.1	0.000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-2089400_47	UniRef90_UPI0015F3DE1D	286.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2089400_47	663278.Ethha_2423	73.2	0.0000000000000185	sequence-specific DNA binding	N/A
Pfam	UHGV-2089400_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2089400_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2089400_47	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2089400_48	phrog_1914	143.3	1.49939e-42	N/A	unknown function
UniRef90	UHGV-2089400_48	UniRef90_UPI000E543E50	374.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2089400_48	1160721.RBI_I01604	172.0	0	N/A	N/A
Pfam	UHGV-2089400_48	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2089400_48	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2089400_48	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-2089400_49	UniRef90_UPI000E52DA24	776.0	0	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-2089400_49	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-2089400_49	PF18933,PF02883,MF_02248,NF008627,COG5435,COG2847	N/A	N/A	N/A	N/A
KOfam	UHGV-2089400_50	K14059	102.4	7.1e-30	int; integrase	N/A
PHROG	UHGV-2089400_50	phrog_1	122.1	6.1e-36	integrase	integration and excision
UniRef90	UHGV-2089400_50	UniRef90_A0A1G5CL52	791.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-2089400_50	693746.OBV_41260	180.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2089400_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2089400_50	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-2089400_50	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A