UHGV-2090029 (vOTU-041795)

Viral Genome: UHGV-2090029

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2090029
vOTU ID	vOTU-041795
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029513\|Ga0244810_100730
Associated BioSample	SAMEA3708661
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.58 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9756
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.79
Jumbo phage	No

Genome content
Genome length (bp)	27,750
GC content	40.49%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	89%
Average CDS length (bps)	574.67
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 65.58)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2090029_1	K06909	397.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2090029_1	phrog_3717	146.5	5.60519e-45	terminase large subunit	head and packaging
UniRef90	UHGV-2090029_1	UniRef90_A0A2N0ULW5	1030.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-2090029_1	411461.DORFOR_01162	615.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2090029_1	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-2090029_1	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2090029_1	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2090029_1	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2090029_1	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2090029_2	phrog_533	325.9	0	portal protein	head and packaging
UniRef90	UHGV-2090029_2	UniRef90_A0A2N0ULU9	832.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-2090029_2	1304866.K413DRAFT_3035	471.0	0	N/A	N/A
structural_annotation	UHGV-2090029_2	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2090029_3	phrog_581	321.1	0	minor head protein	head and packaging
UniRef90	UHGV-2090029_3	UniRef90_A0A2N0ULU5	739.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-2090029_3	658655.HMPREF0988_02563	365.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2090029_3	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2090029_3	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2090029_3	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-2090029_5	phrog_478	129.3	1.5e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-2090029_5	UniRef90_A0A285PT53	146.0	1.03976e-42	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-2090029_5	478749.BRYFOR_08526	148.0	2.24208e-44	N/A	N/A
PHROG	UHGV-2090029_6	phrog_194	102.4	5.5e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-2090029_6	UniRef90_A0A2N0ULW9	336.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-2090029_6	742765.HMPREF9457_02126	177.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-2090029_6	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2090029_6	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2090029_7	phrog_422	226.6	0	major head protein	head and packaging
eggNOG-mapper	UHGV-2090029_7	693746.OBV_18090	394.0	0	N/A	N/A
structural_annotation	UHGV-2090029_7	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-2090029_8	phrog_541	80.4	2e-23	head-tail adaptor	connector
UniRef90	UHGV-2090029_8	UniRef90_A0A371AQT0	109.0	1.94e-28	N/A	N/A
eggNOG-mapper	UHGV-2090029_8	1449050.JNLE01000003_gene3888	82.0	1.7e-18	N/A	N/A
PHROG	UHGV-2090029_9	phrog_3366	69.1	5.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-2090029_9	1449050.JNLE01000003_gene3887	84.7	2.95e-19	N/A	N/A
Pfam	UHGV-2090029_9	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-2090029_9	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-2090029_10	phrog_556	119.0	1.4e-35	minor head protein	head and packaging
UniRef90	UHGV-2090029_10	UniRef90_UPI00189BC4F9	184.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-2090029_10	1449050.JNLE01000003_gene3886	178.0	0	N/A	N/A
Pfam	UHGV-2090029_10	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2090029_10	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2090029_11	phrog_3266	104.4	7.6e-31	tail completion	connector
eggNOG-mapper	UHGV-2090029_11	1449050.JNLE01000003_gene3885	145.0	1.32002e-42	N/A	N/A
structural_annotation	UHGV-2090029_11	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-2090029_12	phrog_3099	148.5	2.94273e-44	N/A	unknown function
eggNOG-mapper	UHGV-2090029_12	1160721.RBI_II00532	230.0	0	N/A	N/A
structural_annotation	UHGV-2090029_12	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2090029_13	phrog_11299	137.4	7.30006e-41	N/A	unknown function
eggNOG-mapper	UHGV-2090029_13	1449050.JNLE01000003_gene3883	97.4	6.09e-24	N/A	N/A
structural_annotation	UHGV-2090029_13	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2090029_14	phrog_706	138.8	3.39997e-41	N/A	unknown function
UniRef90	UHGV-2090029_14	UniRef90_A0A2N0ULW2	370.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-2090029_14	1160721.RBI_II00530	211.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2090029_14	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2090029_14	PF06854	N/A	N/A	N/A	N/A
Pfam	UHGV-2090029_16	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
PHROG	UHGV-2090029_17	phrog_1535	487.4	0	tail length tape measure protein	tail
UniRef90	UHGV-2090029_17	UniRef90_A0A2N0ULX3	2070.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2090029_17	33035.JPJF01000093_gene2243	349.0	0	phage tail tape measure protein	N/A
COG	UHGV-2090029_17	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-2090029_17	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2090029_18	phrog_1194	63.3	3.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-2090029_18	397290.C810_05238	94.0	1.02e-22	N/A	N/A
Pfam	UHGV-2090029_18	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-2090029_18	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2090029_19	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
UniRef90	UHGV-2090029_20	UniRef90_A0A374N9Y2	178.0	0	N/A	N/A
structural_annotation	UHGV-2090029_20	PF01664	N/A	N/A	N/A	N/A
PHROG	UHGV-2090029_22	phrog_1863	69.6	3.7e-21	N/A	unknown function
UniRef90	UHGV-2090029_22	UniRef90_UPI001F223E8B	103.0	2.53e-27	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-2090029_22	1203606.HMPREF1526_02027	75.9	3.8e-17	N/A	N/A
PHROG	UHGV-2090029_23	phrog_443	63.7	4.9e-18	holin	lysis
UniRef90	UHGV-2090029_23	UniRef90_R6R2Q3	88.6	8.35e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-2090029_23	1298920.KI911353_gene2669	82.0	5.62e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-2090029_23	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-2090029_23	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-2090029_24	phrog_18591	133.0	1.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-2090029_24	272624.lpg2561	176.0	0	N/A	N/A
KOfam	UHGV-2090029_25	K01448	56.4	4.8e-16	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2090029_25	phrog_1794	86.7	3.9e-25	amidase	lysis
UniRef90	UHGV-2090029_25	UniRef90_A0A373KFY8	428.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-2090029_25	1203606.HMPREF1526_01931	87.0	5.66e-17	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-2090029_25	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-2090029_25	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-2090029_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2090029_25	PF01520,PF01471,MF_00562,TIGR02883,TIGR03979,COG0860,COG3409	N/A	N/A	N/A	N/A
KOfam	UHGV-2090029_26	K14059	157.5	0	int; integrase	N/A
PHROG	UHGV-2090029_26	phrog_1	169.4	0	integrase	integration and excision
UniRef90	UHGV-2090029_26	UniRef90_A0A412L7T7	694.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-2090029_26	1540257.JQMW01000011_gene2033	324.0	0	Phage integrase family	N/A
Pfam	UHGV-2090029_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2090029_26	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2090029_26	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-2090029_27	UniRef90_UPI001D095173	90.5	3.14e-20	protein-export chaperone SecB	N/A
eggNOG-mapper	UHGV-2090029_27	1031288.AXAA01000014_gene407	58.5	0.0000000112	Preprotein translocase subunit SecB	N/A
structural_annotation	UHGV-2090029_27	PF02556,MF_00821,NF004392,COG1952	N/A	N/A	N/A	N/A
KOfam	UHGV-2090029_28	K07729	45.4	0.0000000000017	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-2090029_28	UniRef90_A0A412UNZ9	250.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2090029_28	1280688.AUJB01000009_gene1936	89.0	7.24e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2090029_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2090029_28	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
UniRef90	UHGV-2090029_29	UniRef90_UPI001C00B95B	185.0	0	type II toxin-antitoxin system RelE/ParE family toxin	N/A
eggNOG-mapper	UHGV-2090029_29	293826.Amet_3134	62.8	0.000000000103	N/A	N/A
structural_annotation	UHGV-2090029_29	PF05973,TIGR02683,COG4683	N/A	N/A	N/A	N/A
UniRef90	UHGV-2090029_30	UniRef90_UPI0007E1B082	64.7	0.00000000000311	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2090029_30	1232443.BAIA02000106_gene3117	71.2	0.00000000000000988	N/A	N/A
structural_annotation	UHGV-2090029_30	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-2090029_31	K22299	66.7	5.1e-19	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-2090029_31	phrog_8	66.9	4.2e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-2090029_31	UniRef90_A0A412L7U4	213.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2090029_31	1111454.HMPREF1250_1028	88.2	5.07e-21	carbohydrate binding	N/A
PADLOC	UHGV-2090029_31	retron_type_VI_hth_cluster2_1	63.4	3.5e-18	N/A	Retron
Pfam	UHGV-2090029_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2090029_31	COG2390	N/A	N/A	DNA-binding transcriptional regulator LsrR, DeoR family	N/A
structural_annotation	UHGV-2090029_31	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2090029_32	K07729	57.0	4.8e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-2090029_32	phrog_8	45.2	0.000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-2090029_32	UniRef90_A0A412L7W1	125.0	5.12e-36	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2090029_32	1132442.KB889752_gene869	64.3	0.000000000000814	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2090029_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2090029_32	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2090029_33	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
PHROG	UHGV-2090029_36	phrog_3882	42.5	0.0000000000079	N/A	unknown function
KOfam	UHGV-2090029_39	K15773	49.2	0.00000000000012	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-2090029_39	phrog_3	48.1	0.00000000000051	transcriptional repressor	transcription regulation
UniRef90	UHGV-2090029_39	UniRef90_A0A374N3U7	132.0	5.39e-39	XRE family transcriptional regulator	N/A
Pfam	UHGV-2090029_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2090029_39	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2090029_39	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-2090029_42	UniRef90_A0A2N0ULT9	136.0	5.99994e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-2090029_42	1283300.ATXB01000001_gene1737	45.8	0.0000097	DNA excision	N/A
Pfam	UHGV-2090029_42	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-2090029_42	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-2090029_42	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-2090029_42	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A