UHGV-2095318 (vOTU-041818)

Viral Genome: UHGV-2095318

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2095318
vOTU ID	vOTU-041818
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029475\|Ga0244097_100571\|provirus_5953_41798
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.04 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	4
Recoded stop codon	No

Viral Content
geNomad score	0.9426
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.94
Jumbo phage	No

Genome content
Genome length (bp)	27,148
GC content	48.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	94%
Average CDS length (bps)	641.25
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 73.04)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2095318_1	K06400	399.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2095318_1	phrog_95	382.6	0	integrase	integration and excision
UniRef90	UHGV-2095318_1	UniRef90_UPI001D05C6CD	905.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-2095318_1	706434.HMPREF9429_00560	482.0	0	overlaps another CDS with the same product name	N/A
Pfam	UHGV-2095318_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2095318_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-2095318_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2095318_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2095318_1	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-2095318_2	K02342	150.1	1.4013e-44	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-2095318_2	phrog_192	122.2	3.1e-36	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2095318_2	UniRef90_UPI001D07425A	683.0	0	3'-5' exoribonuclease	N/A
eggNOG-mapper	UHGV-2095318_2	653733.Selin_2171	123.0	2.21e-31	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	N/A
PADLOC	UHGV-2095318_2	cd06127	104.1	2.3e-30	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-2095318_2	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-2095318_2	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-2095318_2	COG0847	N/A	N/A	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	N/A
structural_annotation	UHGV-2095318_2	PF00929,MF_00157,NF004844,COG0847	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_3	phrog_87	75.6	5.4e-22	metallo-protease	other
UniRef90	UHGV-2095318_3	UniRef90_UPI001D0906D8	290.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2095318_3	1123250.KB908434_gene7	142.0	3.93064e-42	Zn peptidase	N/A
Pfam	UHGV-2095318_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2095318_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2095318_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-2095318_4	K22300	66.7	5.2e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2095318_4	phrog_8	73.3	4.2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-2095318_4	UniRef90_UPI001D08154B	229.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-2095318_4	1273103.NM10_03006	89.0	1.51e-20	sequence-specific DNA binding	N/A
Pfam	UHGV-2095318_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2095318_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2095318_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-2095318_5	UniRef90_A0A346B2I2	92.8	5.56e-23	N/A	N/A
eggNOG-mapper	UHGV-2095318_5	1273103.NM10_03001	90.5	7.64e-23	N/A	N/A
structural_annotation	UHGV-2095318_5	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_7	phrog_14367	46.9	0.00000000000016	N/A	unknown function
UniRef90	UHGV-2095318_7	UniRef90_UPI001D065B32	164.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-2095318_7	568816.Acin_1254	75.9	9.41e-17	LysM domain	N/A
Pfam	UHGV-2095318_7	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-2095318_7	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-2095318_7	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
KOfam	UHGV-2095318_9	K19171	91.8	5.1e-27	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-2095318_9	phrog_77	230.9	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2095318_9	UniRef90_UPI001D060172	1031.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-2095318_9	1382358.JHVN01000024_gene1691	360.0	0	N/A	N/A
PADLOC	UHGV-2095318_9	AAA_15	45.2	0.00000000000045	N/A	N/A
Pfam	UHGV-2095318_9	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-2095318_9	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2095318_9	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
KOfam	UHGV-2095318_10	K07455	93.4	3.5e-27	recT; recombination protein RecT	N/A
PHROG	UHGV-2095318_10	phrog_148	89.4	3.8e-26	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2095318_10	UniRef90_UPI001D097B3F	486.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-2095318_10	1121085.AUCI01000010_gene513	87.8	6.13e-17	RecT family	N/A
Pfam	UHGV-2095318_10	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-2095318_10	PF03837,NF007351	N/A	N/A	N/A	N/A
KOfam	UHGV-2095318_11	K06167	43.5	0.0000000000039	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-2095318_11	phrog_392	161.1	0	metal-dependent hydrolase	other
UniRef90	UHGV-2095318_11	UniRef90_UPI001D06240E	391.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-2095318_11	330397.A8ATK9_9CAUD	187.0	0	hydrolase activity	N/A
Pfam	UHGV-2095318_11	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
dbAPIS	UHGV-2095318_11	APIS058	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2095318_11	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_12	phrog_9403	49.5	0.00000000000007	N/A	unknown function
PHROG	UHGV-2095318_13	phrog_186	94.0	1.8e-27	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2095318_13	UniRef90_UPI0003FCA6D4	216.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-2095318_13	1273103.NM10_01164	120.0	8.26e-31	DnaD domain protein	N/A
Pfam	UHGV-2095318_13	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-2095318_13	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-2095318_13	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2095318_13	PF01978,MF_01911,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-2095318_14	K02315	109.3	4.8e-32	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-2095318_14	phrog_50	107.5	1.3e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2095318_14	UniRef90_UPI001D07AA17	484.0	0	DnaA/Hda family protein	N/A
eggNOG-mapper	UHGV-2095318_14	1111454.HMPREF1250_0279	319.0	0	DNA replication protein	N/A
Pfam	UHGV-2095318_14	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-2095318_14	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-2095318_14	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_15	phrog_6568	65.4	6.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-2095318_15	742733.HMPREF9469_05046	47.4	0.00000349	N/A	N/A
KOfam	UHGV-2095318_18	K03111	149.5	3.22299e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2095318_18	phrog_44	150.1	1.12104e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2095318_18	UniRef90_UPI001D0689F9	249.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2095318_18	1262914.BN533_00181	122.0	6.86e-34	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-2095318_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2095318_18	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2095318_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2095318_18	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2095318_18	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2095318_19	MF_00773	N/A	N/A	N/A	N/A
KOfam	UHGV-2095318_20	K01160	50.5	0.000000000000059	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2095318_20	phrog_140	125.3	4e-37	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2095318_20	UniRef90_UPI001D082351	218.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2095318_20	857293.CAAU_0790	117.0	5.53e-32	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2095318_20	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2095318_20	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2095318_20	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_21	phrog_36	74.2	2.1e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-2095318_21	UniRef90_A0A346B157	139.0	1.08e-38	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-2095318_21	1111454.HMPREF1250_0269	166.0	0	N/A	N/A
structural_annotation	UHGV-2095318_21	PF08281,TIGR01636,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-2095318_22	K07451	51.7	0.000000000000016	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-2095318_22	phrog_144	75.8	6.3e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2095318_22	UniRef90_UPI001D07EF7D	147.0	6.16571e-44	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2095318_22	1304866.K413DRAFT_1217	113.0	1.21e-30	HNH nucleases	N/A
Pfam	UHGV-2095318_22	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-2095318_23	phrog_13845	115.1	2.7e-34	N/A	unknown function
eggNOG-mapper	UHGV-2095318_23	1399942.U3PDR2_9CAUD	112.0	3.12e-30	N/A	N/A
structural_annotation	UHGV-2095318_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_24	phrog_9	253.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-2095318_24	UniRef90_UPI000406183D	1077.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-2095318_24	1399942.U3PBG5_9CAUD	592.0	0	Phage Terminase	N/A
Pfam	UHGV-2095318_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2095318_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
structural_annotation	UHGV-2095318_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_25	phrog_12	178.8	0	portal protein	head and packaging
UniRef90	UHGV-2095318_25	UniRef90_UPI0003FDC1C6	763.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2095318_25	742738.HMPREF9460_01364	307.0	0	Portal protein	N/A
Pfam	UHGV-2095318_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-2095318_25	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-2095318_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2095318_25	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2095318_26	K06904	78.4	1.3e-22	N/A	N/A
PHROG	UHGV-2095318_26	phrog_80	105.1	1.1e-30	head maturation protease	head and packaging
UniRef90	UHGV-2095318_26	UniRef90_UPI000415264F	354.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-2095318_26	1285586.H131_21307	133.0	1.17e-36	Caudovirus prohead serine protease	N/A
Pfam	UHGV-2095318_26	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-2095318_26	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-2095318_26	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_27	phrog_10	226.1	0	major head protein	head and packaging
UniRef90	UHGV-2095318_27	UniRef90_UPI000400CBEC	633.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-2095318_27	903814.ELI_1299	348.0	0	Phage capsid family	N/A
Pfam	UHGV-2095318_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2095318_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2095318_27	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2095318_27	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2095318_28	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_29	phrog_40	40.3	0.000000000046	head-tail adaptor Ad1	connector
UniRef90	UHGV-2095318_29	UniRef90_UPI00041E0DD1	191.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-2095318_29	632245.CLP_2916	83.6	1.18e-19	Phage gp6-like head-tail connector protein	N/A
NCBIFam	UHGV-2095318_29	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-2095318_29	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_30	phrog_25	64.4	1.7e-18	head closure Hc1	connector
UniRef90	UHGV-2095318_30	UniRef90_UPI000415E870	214.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-2095318_30	1285586.H131_21292	90.1	7.01e-22	Phage head-tail joining protein	N/A
Pfam	UHGV-2095318_30	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-2095318_30	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-2095318_30	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-2095318_30	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_31	phrog_5	41.0	0.000000000048	tail completion or Neck1 protein	connector
UniRef90	UHGV-2095318_31	UniRef90_UPI000410849E	286.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2095318_31	1095747.HMPREF1049_2007	106.0	2.55e-27	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-2095318_31	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-2095318_31	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_32	phrog_525	59.3	5.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-2095318_32	293826.Amet_2419	52.8	0.0000023	N/A	N/A
Pfam	UHGV-2095318_32	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-2095318_32	PF20765,TIGR01633,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_33	phrog_1480	313.4	0	tail sheath	tail
UniRef90	UHGV-2095318_33	UniRef90_A0A7X2XHA8	364.0	0	Phage tail sheath protein	N/A
eggNOG-mapper	UHGV-2095318_33	1095747.HMPREF1049_2005	265.0	0	Phage tail sheath C-terminal domain	N/A
Pfam	UHGV-2095318_33	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-2095318_33	PF10758,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_34	phrog_365	118.9	3.2e-35	tail protein	tail
UniRef90	UHGV-2095318_34	UniRef90_UPI000429BBBA	263.0	0	phage tail tube protein	N/A
eggNOG-mapper	UHGV-2095318_34	318464.IO99_13720	110.0	4.75e-29	Phage tail tube protein	N/A
Pfam	UHGV-2095318_34	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-2095318_34	PF09393,TIGR02241,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_35	phrog_4976	49.5	0.000000000000085	tail assembly chaperone	tail
eggNOG-mapper	UHGV-2095318_35	632245.CLP_2608	50.4	0.00000429	N/A	N/A
structural_annotation	UHGV-2095318_35	PF08890,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-2095318_37	phrog_7972	204.2	0	N/A	unknown function
UniRef90	UHGV-2095318_37	UniRef90_A0A8G0NSD2	202.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2095318_37	469617.FUAG_00846	210.0	0	tape measure	N/A
COG	UHGV-2095318_37	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-2095318_38	phrog_5184	104.7	5.5e-31	N/A	unknown function
UniRef90	UHGV-2095318_38	UniRef90_A0A5C0SFK8	110.0	1.14e-27	Phage portal protein	N/A
eggNOG-mapper	UHGV-2095318_38	1285586.H131_21257	63.9	0.000000000135	LysM domain	N/A
COG	UHGV-2095318_38	COG1652	N/A	N/A	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	N/A
PHROG	UHGV-2095318_39	phrog_400	184.4	0	tail protein	tail
UniRef90	UHGV-2095318_39	UniRef90_UPI000F0469E9	144.0	2.84e-35	CHAP domain-containing protein	N/A
COG	UHGV-2095318_39	COG4193	N/A	N/A	Beta- N-acetylglucosaminidase	N/A
structural_annotation	UHGV-2095318_39	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A