UHGV-2096612 (vOTU-008253)

Viral Genome: UHGV-2096612

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2096612
vOTU ID	vOTU-008253
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029503\|Ga0244781_100060\|provirus_8672_49789
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.94 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9746
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.51
Jumbo phage	No

Genome content
Genome length (bp)	35,641
GC content	42.23%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	94%
Average CDS length (bps)	629.89
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2096612_1	K06400	248.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2096612_1	phrog_95	262.0	0	integrase	integration and excision
UniRef90	UHGV-2096612_1	UniRef90_A0A374E9M4	1020.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-2096612_1	97139.C824_00068	716.0	0	Recombinase	N/A
Pfam	UHGV-2096612_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2096612_1	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-2096612_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2096612_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_2	phrog_38135	64.0	2.1e-18	N/A	unknown function
UniRef90	UHGV-2096612_2	UniRef90_UPI001F3985DB	681.0	0	N/A	N/A
eggNOG-mapper	UHGV-2096612_2	411465.PEPMIC_00706	80.9	0.00000000000000201	N/A	N/A
Pfam	UHGV-2096612_2	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-2096612_2	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
structural_annotation	UHGV-2096612_2	PF14020,PF21602	N/A	N/A	N/A	N/A
KOfam	UHGV-2096612_4	K18830	76.5	3.8e-22	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-2096612_4	phrog_8	60.2	3.7e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-2096612_4	UniRef90_A0A3E4LWU1	216.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2096612_4	445972.ANACOL_03315	139.0	3.11004e-41	N/A	N/A
Pfam	UHGV-2096612_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2096612_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2096612_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_11	phrog_9607	78.9	6.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-2096612_11	1304866.K413DRAFT_4639	91.3	1.96e-20	N/A	N/A
structural_annotation	UHGV-2096612_11	PF02883,MF_00791,NF012200,COG3354	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_15	phrog_3584	153.9	1.4013e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2096612_15	665950.HMPREF1025_02552	316.0	0	N/A	N/A
structural_annotation	UHGV-2096612_15	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-2096612_16	K03469	50.9	0.00000000000003	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-2096612_16	phrog_531	61.1	2.1e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2096612_16	UniRef90_A0A844KCI1	294.0	0	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-2096612_16	665950.HMPREF1025_02551	152.0	1.4013e-45	RNase H	N/A
Pfam	UHGV-2096612_16	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-2096612_16	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-2096612_16	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2096612_17	1280698.AUJS01000007_gene1016	228.0	0	N/A	N/A
PHROG	UHGV-2096612_18	phrog_4433	70.3	2.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-2096612_18	1280698.AUJS01000007_gene1017	188.0	0	N/A	N/A
PHROG	UHGV-2096612_19	phrog_8470	235.2	0	N/A	unknown function
UniRef90	UHGV-2096612_19	UniRef90_UPI001C01E393	572.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-2096612_19	1280698.AUJS01000007_gene1018	840.0	0	N/A	N/A
Pfam	UHGV-2096612_19	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-2096612_19	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_20	phrog_15077	88.0	1.9e-25	N/A	unknown function
UniRef90	UHGV-2096612_20	UniRef90_A0A3A6HZA9	237.0	0	N/A	N/A
eggNOG-mapper	UHGV-2096612_20	1280698.AUJS01000007_gene1019	373.0	0	N/A	N/A
structural_annotation	UHGV-2096612_20	PF11300,NF033725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2096612_21	1196322.A370_05726	66.2	0.000000000000411	N/A	N/A
PHROG	UHGV-2096612_22	phrog_7566	116.9	6.4e-35	N/A	unknown function
eggNOG-mapper	UHGV-2096612_22	665950.HMPREF1025_02547	174.0	0	N/A	N/A
PHROG	UHGV-2096612_26	phrog_8684	113.4	1.3e-33	N/A	unknown function
UniRef90	UHGV-2096612_26	UniRef90_A0A373MQ88	355.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-2096612_26	457412.RSAG_01162	116.0	8.31e-31	YopX protein	N/A
Pfam	UHGV-2096612_26	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-2096612_26	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-2096612_26	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-2096612_27	UniRef90_A0A373MPD0	183.0	0	XRE family transcriptional regulator	N/A
PHROG	UHGV-2096612_30	phrog_36	69.7	4.8e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-2096612_30	UniRef90_UPI000E49B095	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-2096612_30	658655.HMPREF0988_02569	151.0	0	sigma factor activity	N/A
Pfam	UHGV-2096612_30	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-2096612_30	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-2096612_30	PF07374,MF_00674,TIGR02984,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-2096612_31	K07451	51.4	0.000000000000021	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-2096612_31	phrog_119	82.4	5.4e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2096612_31	UniRef90_D4M587	281.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2096612_31	1232452.BAIB02000007_gene1631	95.9	9.56e-24	HNH nucleases	N/A
Pfam	UHGV-2096612_31	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2096612_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-2096612_31	PF09889,COG4068	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_32	phrog_5110	97.3	9.5e-29	terminase small subunit	head and packaging
UniRef90	UHGV-2096612_32	UniRef90_A0A1C5LZF0	98.2	3.95e-24	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-2096612_32	1211817.CCAT010000008_gene938	85.5	1.59e-19	Phage terminase, small subunit	N/A
Pfam	UHGV-2096612_32	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-2096612_32	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2096612_32	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_33	phrog_9	257.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-2096612_33	UniRef90_D4M588	1133.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-2096612_33	1232452.BAIB02000007_gene1629	536.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-2096612_33	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2096612_33	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2096612_33	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2096612_33	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_34	phrog_12	66.0	2.8e-19	portal protein	head and packaging
UniRef90	UHGV-2096612_34	UniRef90_UPI00156D5DC9	586.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2096612_34	1232452.BAIB02000007_gene1627	277.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-2096612_34	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2096612_34	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2096612_34	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2096612_35	K01358	157.6	0	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2096612_35	phrog_94	229.1	0	head maturation protease	head and packaging
UniRef90	UHGV-2096612_35	UniRef90_UPI00156EEE56	364.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-2096612_35	1232452.BAIB02000007_gene1626	265.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2096612_35	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2096612_35	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2096612_35	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_36	phrog_10	87.6	1.5e-25	major head protein	head and packaging
UniRef90	UHGV-2096612_36	UniRef90_D4M591	649.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-2096612_36	1232452.BAIB02000007_gene1625	475.0	0	Phage capsid family	N/A
Pfam	UHGV-2096612_36	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2096612_36	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2096612_36	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2096612_36	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-2096612_38	UniRef90_D4M593	206.0	0	Phage head-tail adaptor, putative, SPP1 family	N/A
NCBIFam	UHGV-2096612_38	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-2096612_38	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2096612_39	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_40	phrog_5	47.2	0.0000000000005	tail completion or Neck1 protein	connector
UniRef90	UHGV-2096612_40	UniRef90_D4M595	195.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-2096612_40	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-2096612_40	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_41	phrog_88	98.2	8.7e-29	major tail protein	tail
UniRef90	UHGV-2096612_41	UniRef90_D4M596	375.0	0	Phage major tail protein, phi13 family	N/A
Pfam	UHGV-2096612_41	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-2096612_41	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-2096612_41	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-2096612_43	K10421	51.8	0.0000000000000062	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-2096612_43	phrog_23464	196.8	0	N/A	unknown function
eggNOG-mapper	UHGV-2096612_43	1232452.BAIB02000007_gene1616	448.0	0	phage tail tape measure protein	N/A
COG	UHGV-2096612_43	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-2096612_44	phrog_33	61.5	2.2e-17	distal tail protein Dit	tail
UniRef90	UHGV-2096612_44	UniRef90_UPI000E50043B	357.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-2096612_44	1235798.C817_04593	209.0	0	phage tail	N/A
COG	UHGV-2096612_44	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2096612_44	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_45	phrog_13289	397.3	0	tail protein	tail
UniRef90	UHGV-2096612_45	UniRef90_D4M5A0	1064.0	0	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-2096612_45	1235798.C817_02568	474.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-2096612_45	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2096612_45	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2096612_45	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-2096612_45	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_46	phrog_14030	134.6	4.1e-40	N/A	unknown function
UniRef90	UHGV-2096612_46	UniRef90_A0A373N7H3	624.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-2096612_46	33035.JPJF01000093_gene2240	325.0	0	NlpC/P60 family	N/A
Pfam	UHGV-2096612_46	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-2096612_46	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-2096612_46	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-2096612_46	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
KOfam	UHGV-2096612_47	K07296	42.9	0.0000000000051	ADIPOQ, ACDC; adiponectin	N/A
PHROG	UHGV-2096612_47	phrog_10972	45.7	0.00000000000077	tail fiber protein	tail
UniRef90	UHGV-2096612_47	UniRef90_A0A374E9Q0	401.0	0	Collagen-like protein	N/A
Pfam	UHGV-2096612_47	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-2096612_47	PF10651,NF007636,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_48	phrog_16164	75.3	4.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-2096612_48	33035.JPJF01000093_gene2236	163.0	0	N/A	N/A
structural_annotation	UHGV-2096612_48	PF10651,NF032891	N/A	N/A	N/A	N/A
KOfam	UHGV-2096612_49	K16628	98.2	2e-29	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-2096612_49	phrog_819	129.6	1.7e-39	tail protein	tail
UniRef90	UHGV-2096612_49	UniRef90_UPI0011C154AF	243.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-2096612_49	290402.Cbei_3387	177.0	0	N/A	N/A
Pfam	UHGV-2096612_49	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-2096612_50	K16628	42.2	0.0000000000021	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-2096612_50	phrog_21765	47.3	1.4e-21	N/A	unknown function
UniRef90	UHGV-2096612_50	UniRef90_UPI001A9A6571	552.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-2096612_50	877414.ATWA01000019_gene2051	96.3	1.67e-19	N/A	N/A
Pfam	UHGV-2096612_50	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-2096612_50	PF05737	N/A	N/A	N/A	N/A
UniRef90	UHGV-2096612_51	UniRef90_UPI001C0C21D5	150.0	6.83974e-42	acyl carrier protein	N/A
eggNOG-mapper	UHGV-2096612_51	1235799.C818_04237	276.0	0	N/A	N/A
structural_annotation	UHGV-2096612_51	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_52	phrog_20274	143.8	7.20267e-43	N/A	unknown function
UniRef90	UHGV-2096612_52	UniRef90_A0A173TUK0	202.0	0	Predicted membrane protein	N/A
eggNOG-mapper	UHGV-2096612_52	411902.CLOBOL_05645	152.0	0	N/A	N/A
Pfam	UHGV-2096612_52	PF06541	N/A	N/A	Putative ABC-transporter type IV	ABC_trans_CmpB
COG	UHGV-2096612_52	COG4905	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2096612_52	PF06541,COG4905	N/A	N/A	N/A	N/A
PHROG	UHGV-2096612_53	phrog_37799	73.0	1.4e-21	N/A	unknown function
UniRef90	UHGV-2096612_53	UniRef90_A0A373N7C7	278.0	0	Protein utxA	N/A
eggNOG-mapper	UHGV-2096612_53	411470.RUMGNA_02086	143.0	1.84999e-41	N/A	N/A
Pfam	UHGV-2096612_53	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2096612_53	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2096612_53	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2096612_53	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A