UHGV-2098711 (vOTU-059331)

Viral Genome: UHGV-2098711

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2098711
vOTU ID	vOTU-059331
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029488\|Ga0244072_100721
Associated BioSample	SAMEA3708477
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9816
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.55
Jumbo phage	No

Genome content
Genome length (bp)	40,814
GC content	55.60%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	72
CDS density	93%
Average CDS length (bps)	526.83
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-2098711_2	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_3	phrog_20016	199.3	0	N/A	unknown function
UniRef90	UHGV-2098711_3	UniRef90_A0A285PT46	210.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-2098711_3	1226322.HMPREF1545_00077	180.0	0	N/A	N/A
structural_annotation	UHGV-2098711_3	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_4	phrog_16490	163.6	0	N/A	unknown function
eggNOG-mapper	UHGV-2098711_4	1408437.JNJN01000043_gene803	126.0	1.05e-32	N/A	N/A
PHROG	UHGV-2098711_5	phrog_22984	87.4	9.2e-26	N/A	unknown function
PHROG	UHGV-2098711_6	phrog_21718	116.1	2.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-2098711_6	397290.C810_05210	97.4	1.68e-23	N/A	N/A
PHROG	UHGV-2098711_7	phrog_3754	93.3	2.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-2098711_7	1235790.C805_00054	104.0	2.44e-27	N/A	N/A
eggNOG-mapper	UHGV-2098711_10	1033733.CAEK01000007_gene1628	85.1	9e-17	N/A	N/A
structural_annotation	UHGV-2098711_11	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_13	phrog_15303	75.9	4.4e-22	N/A	unknown function
KOfam	UHGV-2098711_15	K07273	157.5	0	acm; lysozyme	N/A
PHROG	UHGV-2098711_15	phrog_291	110.4	1.7e-32	endolysin	lysis
UniRef90	UHGV-2098711_15	UniRef90_A0A564U0D3	416.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-2098711_15	718252.FP2_04890	242.0	0	hydrolase, family 25	N/A
Pfam	UHGV-2098711_15	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-2098711_15	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-2098711_15	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-2098711_16	UniRef90_A0A6A8KSZ5	87.0	1.5e-21	XkdX family protein	N/A
eggNOG-mapper	UHGV-2098711_16	718252.FP2_16990	87.0	2.52e-22	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-2098711_16	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-2098711_16	PF09693	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_17	phrog_29248	45.0	0.0000000000018	N/A	unknown function
PHROG	UHGV-2098711_18	phrog_10993	272.1	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-2098711_18	UniRef90_A0A350TI55	376.0	0	N/A	N/A
eggNOG-mapper	UHGV-2098711_18	718252.FP2_16970	362.0	0	N/A	N/A
Pfam	UHGV-2098711_18	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-2098711_18	PF19789,PF18911	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2098711_20	1235792.C808_00094	90.5	7.25e-20	phage tail	N/A
COG	UHGV-2098711_20	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2098711_20	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_21	phrog_3558	274.5	0	tail protein	tail
UniRef90	UHGV-2098711_21	UniRef90_UPI001C01D15B	682.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-2098711_21	1120933.ATUY01000002_gene164	155.0	2.4e-37	Prophage endopeptidase tail	N/A
Pfam	UHGV-2098711_21	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-2098711_21	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2098711_21	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_22	phrog_28775	127.0	4.3e-38	tail length tape measure protein	tail
UniRef90	UHGV-2098711_22	UniRef90_A0A844DDD5	659.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-2098711_22	1492737.FEM08_12070	140.0	6.82e-32	tape measure	N/A
Pfam	UHGV-2098711_22	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-2098711_22	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-2098711_22	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-2098711_22	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_25	phrog_885	57.7	1.4e-16	major tail protein	tail
eggNOG-mapper	UHGV-2098711_25	1504822.CCNO01000012_gene492	98.6	4.91e-23	N/A	N/A
structural_annotation	UHGV-2098711_25	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2098711_26	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_27	phrog_17977	42.6	0.0000000000082	N/A	unknown function
UniRef90	UHGV-2098711_27	UniRef90_A0A844DHJ8	123.0	4.93e-34	Phage head closure protein	N/A
structural_annotation	UHGV-2098711_27	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_29	phrog_544	144.7	5.89947e-43	major head protein	head and packaging
UniRef90	UHGV-2098711_29	UniRef90_R0BKA1	429.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-2098711_29	476272.RUMHYD_01776	325.0	0	N/A	N/A
structural_annotation	UHGV-2098711_29	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_31	phrog_478	122.8	1.6e-36	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-2098711_31	UniRef90_A0A373Q857	168.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-2098711_31	1111121.HMPREF1247_0834	100.0	2.43e-25	N/A	N/A
PHROG	UHGV-2098711_32	phrog_5	51.3	0.00000000000003	tail completion or Neck1 protein	connector
UniRef90	UHGV-2098711_32	UniRef90_A0A6N7TNP6	291.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2098711_32	1123309.AQYB01000018_gene814	93.6	1.99e-22	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-2098711_32	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-2098711_32	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_34	phrog_8680	203.7	0	N/A	unknown function
UniRef90	UHGV-2098711_34	UniRef90_A0A844D688	451.0	0	N/A	N/A
eggNOG-mapper	UHGV-2098711_34	1423790.BN53_04265	181.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-2098711_34	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-2098711_34	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2098711_34	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_36	phrog_2468	85.9	6.6e-25	head morphogenesis	head and packaging
UniRef90	UHGV-2098711_36	UniRef90_A0A6N7TLR7	608.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-2098711_36	1504822.CCNO01000013_gene286	112.0	2.52e-24	cell adhesion	N/A
Pfam	UHGV-2098711_36	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-2098711_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2098711_36	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_37	phrog_64	120.8	4.9e-36	portal protein	head and packaging
UniRef90	UHGV-2098711_37	UniRef90_A0A6N7TNT3	857.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2098711_37	642492.Clole_2764	79.7	0.000000000000416	phage portal protein, SPP1	N/A
Pfam	UHGV-2098711_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2098711_37	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-2098711_38	K06909	139.3	3.59994e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2098711_38	phrog_10250	169.1	0	N/A	unknown function
UniRef90	UHGV-2098711_38	UniRef90_A0A844D8I4	833.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2098711_38	411490.ANACAC_00783	486.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2098711_38	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-2098711_38	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-2098711_38	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2098711_38	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2098711_38	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-2098711_39	UniRef90_UPI0018CC2891	118.0	3.65e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2098711_39	1226322.HMPREF1545_00042	114.0	3.75e-30	N/A	N/A
structural_annotation	UHGV-2098711_39	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_40	phrog_36	56.3	5.9e-16	transcriptional regulator	transcription regulation
structural_annotation	UHGV-2098711_40	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_41	phrog_2715	148.5	1.96182e-44	N/A	unknown function
eggNOG-mapper	UHGV-2098711_41	718252.FP2_16370	150.0	5.1848e-44	N/A	N/A
structural_annotation	UHGV-2098711_41	PF18406	N/A	N/A	N/A	N/A
KOfam	UHGV-2098711_42	K01160	59.9	7.6e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2098711_42	phrog_34	61.7	1.5e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2098711_42	UniRef90_A0A6N7TND6	224.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2098711_42	875454.BAEW01000002_gene491	136.0	8.29e-40	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2098711_42	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2098711_42	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2098711_42	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_43	phrog_3136	117.6	6e-35	N/A	unknown function
UniRef90	UHGV-2098711_43	UniRef90_A0A6N7TMC2	213.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-2098711_43	1235793.C809_02645	62.0	0.00000000525	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-2098711_43	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-2098711_43	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2098711_47	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2098711_48	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-2098711_49	K02086	66.4	4.3e-19	dnaD; DNA replication protein	N/A
PHROG	UHGV-2098711_49	phrog_186	75.7	7.3e-22	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2098711_49	UniRef90_A0A6N7TLH4	265.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-2098711_49	877411.JMMA01000002_gene2292	69.3	0.0000000000489	N/A	N/A
Pfam	UHGV-2098711_49	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-2098711_49	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-2098711_49	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-2098711_49	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-2098711_50	K03111	136.4	3.20001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2098711_50	phrog_44	136.4	1.6e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2098711_50	UniRef90_D4K451	278.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2098711_50	718252.FP2_06770	278.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-2098711_50	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2098711_50	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2098711_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2098711_50	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2098711_50	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_51	phrog_7838	112.6	3.1e-33	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2098711_51	UniRef90_A0A8D9UGW3	173.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-2098711_51	742767.HMPREF9456_02052	138.0	4.19e-38	N/A	N/A
structural_annotation	UHGV-2098711_51	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2098711_53	PF06718	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2098711_57	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2098711_60	1121865.OMW_01950	68.2	0.0000000000000433	N/A	N/A
structural_annotation	UHGV-2098711_60	PF17516,NF007197	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_61	phrog_463	230.7	0	anti-repressor	transcription regulation
UniRef90	UHGV-2098711_61	UniRef90_UPI00137B411D	280.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-2098711_61	411490.ANACAC_00813	243.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-2098711_61	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-2098711_61	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-2098711_61	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-2098711_61	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_64	phrog_8	43.6	0.0000000000063	transcriptional regulator	transcription regulation
UniRef90	UHGV-2098711_64	UniRef90_UPI001C009F10	119.0	9.32e-34	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-2098711_64	1268072.PSAB_01325	53.1	0.0000000158	Transcriptional regulator	N/A
Pfam	UHGV-2098711_64	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2098711_64	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2098711_64	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-2098711_65	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2098711_65	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2098711_65	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2098711_68	phrog_888	66.9	3.3e-35	N/A	unknown function
UniRef90	UHGV-2098711_68	UniRef90_A0A6N7TMA2	421.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-2098711_68	999411.HMPREF1092_03312	85.5	3.46e-17	Short C-terminal domain	N/A
Pfam	UHGV-2098711_68	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-2098711_68	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-2098711_68	PF15947,PF14471	N/A	N/A	N/A	N/A
UniRef90	UHGV-2098711_71	UniRef90_A0A6N7TLT0	207.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-2098711_71	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2098711_71	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-2098711_72	K14059	138.4	8.80001e-41	int; integrase	N/A
PHROG	UHGV-2098711_72	phrog_1	163.6	0	integrase	integration and excision
UniRef90	UHGV-2098711_72	UniRef90_A0A6N7TNQ4	706.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-2098711_72	411471.SUBVAR_05137	261.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2098711_72	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2098711_72	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-2098711_72	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A