UHGV-2099252 (vOTU-081357)

Viral Genome: UHGV-2099252

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2099252
vOTU ID	vOTU-081357
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029438\|Ga0243733_1000691
Associated BioSample	SAMN05971436
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.27 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9829
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.92
Jumbo phage	No

Genome content
Genome length (bp)	37,657
GC content	53.96%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	95%
Average CDS length (bps)	512.49
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.27)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-2099252_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2099252_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2099252_1	PF12844	N/A	N/A	N/A	N/A
UniRef90	UHGV-2099252_3	UniRef90_W7KTT8	65.5	0.00000000415	Adhesin_P1_N domain-containing protein	N/A
eggNOG-mapper	UHGV-2099252_3	1298920.KI911353_gene413	140.0	1.23e-38	N/A	N/A
Pfam	UHGV-2099252_3	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
Pfam	UHGV-2099252_3	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-2099252_6	PF13601,TIGR04176,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-2099252_7	K22300	43.1	0.0000000000078	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2099252_7	phrog_8	43.7	0.0000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-2099252_7	UniRef90_A0A810Q1T1	104.0	1.19e-26	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2099252_7	46256.BBIK01000005_gene1058	51.6	0.00000117	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-2099252_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2099252_7	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2099252_7	PF01381,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-2099252_9	K22300	45.4	0.0000000000016	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2099252_9	phrog_8	42.5	0.000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-2099252_9	UniRef90_A0A810PZI0	87.8	1.41e-21	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2099252_9	1122143.AUEG01000004_gene1250	51.6	0.000000214	Helix-turn-helix domain	N/A
Pfam	UHGV-2099252_9	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-2099252_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2099252_9	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2099252_10	1235835.C814_03153	74.7	5.02e-17	N/A	N/A
structural_annotation	UHGV-2099252_10	PF09035,NF040990	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2099252_11	PF10548	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_16	phrog_434	327.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2099252_16	UniRef90_A0A1Y4W4B5	421.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-2099252_16	428125.CLOLEP_01823	340.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-2099252_16	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-2099252_16	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-2099252_16	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-2099252_16	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-2099252_17	K07455	279.9	0	recT; recombination protein RecT	N/A
PHROG	UHGV-2099252_17	phrog_148	270.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2099252_17	UniRef90_A0A1Y4W4R3	386.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-2099252_17	1226322.HMPREF1545_00015	344.0	0	RecT family	N/A
Pfam	UHGV-2099252_17	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-2099252_17	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-2099252_17	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-2099252_17	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-2099252_18	K03111	147.0	1.90577e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2099252_18	phrog_44	148.0	4.76441e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2099252_18	UniRef90_R6LLA3	196.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2099252_18	1226322.HMPREF1545_04080	192.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-2099252_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2099252_18	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2099252_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2099252_18	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2099252_18	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_20	phrog_16304	57.8	2.2e-16	N/A	unknown function
UniRef90	UHGV-2099252_20	UniRef90_A0A3D3Y5P0	220.0	0	N/A	N/A
Pfam	UHGV-2099252_20	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-2099252_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-2099252_20	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_23	phrog_9298	58.9	6.8e-17	radical SAM domain protein	other
UniRef90	UHGV-2099252_23	UniRef90_A0A841L4D7	310.0	0	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	N/A
eggNOG-mapper	UHGV-2099252_23	742817.HMPREF9449_01796	291.0	0	radical SAM domain protein	N/A
COG	UHGV-2099252_23	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-2099252_23	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
UniRef90	UHGV-2099252_24	UniRef90_A0A417H740	159.0	0	N/A	N/A
Pfam	UHGV-2099252_24	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-2099252_25	phrog_3136	125.4	2.5e-37	N/A	unknown function
UniRef90	UHGV-2099252_25	UniRef90_A0A3D0HBD2	101.0	1.81e-24	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-2099252_25	642492.Clole_1416	70.1	0.000000000000156	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-2099252_25	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-2099252_25	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-2099252_25	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_26	phrog_4019	68.1	7.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-2099252_26	665956.HMPREF1032_03087	81.3	1.15e-16	N/A	N/A
PHROG	UHGV-2099252_30	phrog_1770	57.3	3.1e-16	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2099252_30	536233.CLO_1822	129.0	1.01e-35	N/A	N/A
structural_annotation	UHGV-2099252_30	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2099252_33	742738.HMPREF9460_02503	90.9	1.37e-22	N/A	N/A
structural_annotation	UHGV-2099252_33	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-2099252_34	K07319	124.4	1e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-2099252_34	phrog_498	444.4	0	DNA methyltransferase	other
UniRef90	UHGV-2099252_34	UniRef90_R5AIZ8	443.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-2099252_34	1423758.BN55_01455	425.0	0	DNA methylase	N/A
PADLOC	UHGV-2099252_34	MTase_II_00015	234.2	0	Type II methyltransferase	RM
Pfam	UHGV-2099252_34	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-2099252_34	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-2099252_34	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-2099252_34	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-2099252_36	K06909	101.9	7.9e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2099252_36	phrog_10250	118.9	3.7e-35	N/A	unknown function
UniRef90	UHGV-2099252_36	UniRef90_A0A1I3QR69	466.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-2099252_36	748224.HMPREF9436_03341	338.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2099252_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-2099252_36	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-2099252_36	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2099252_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2099252_36	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_37	phrog_64	154.1	0	portal protein	head and packaging
UniRef90	UHGV-2099252_37	UniRef90_UPI001AA0B7FF	498.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2099252_37	673376.F2VHW1_9CAUD	218.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-2099252_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2099252_37	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2099252_38	PF10651,NF038186	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2099252_40	411471.SUBVAR_06929	310.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-2099252_40	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-2099252_41	phrog_35892	122.6	1.4e-36	N/A	unknown function
UniRef90	UHGV-2099252_41	UniRef90_UPI001F37D978	159.0	6.92003e-41	leucine-rich repeat domain-containing protein	N/A
eggNOG-mapper	UHGV-2099252_41	471875.RUMLAC_02240	144.0	6.85e-36	dockerin type I repeat-containing domain protein	N/A
Pfam	UHGV-2099252_41	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
NCBIFam	UHGV-2099252_41	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
COG	UHGV-2099252_41	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2099252_41	PF13306,NF041351	N/A	N/A	N/A	N/A
UniRef90	UHGV-2099252_43	UniRef90_A0A521IRB0	55.5	0.000000616	Chitin-binding type-3 domain-containing protein	N/A
structural_annotation	UHGV-2099252_43	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_44	phrog_115	122.1	4.5e-36	minor head protein	head and packaging
UniRef90	UHGV-2099252_44	UniRef90_A0A810PSD3	451.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-2099252_44	1504822.CCNO01000013_gene286	220.0	0	cell adhesion	N/A
Pfam	UHGV-2099252_44	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-2099252_44	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-2099252_44	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2099252_44	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_45	phrog_5	82.8	5.8e-24	tail completion or Neck1 protein	connector
UniRef90	UHGV-2099252_45	UniRef90_A0A7X5E1T2	185.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2099252_45	1443125.Z962_05620	90.1	2.28e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-2099252_45	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-2099252_45	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-2099252_45	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_46	phrog_194	46.5	0.00000000000067	head scaffolding protein	head and packaging
UniRef90	UHGV-2099252_46	UniRef90_A0A6B9SU02	150.0	1.3999e-42	Fibronectin autolysin	N/A
eggNOG-mapper	UHGV-2099252_46	476272.RUMHYD_01775	57.8	0.000000125	COG NOG36366 non supervised orthologous group	N/A
structural_annotation	UHGV-2099252_46	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_47	phrog_544	131.3	8.5e-39	major head protein	head and packaging
UniRef90	UHGV-2099252_47	UniRef90_A0A1C6B5R0	593.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-2099252_47	1232453.BAIF02000011_gene3359	362.0	0	N/A	N/A
Pfam	UHGV-2099252_47	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-2099252_47	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_49	phrog_17977	79.1	4e-23	N/A	unknown function
UniRef90	UHGV-2099252_49	UniRef90_UPI00141211AB	114.0	9.97e-31	head-tail adaptor protein	N/A
structural_annotation	UHGV-2099252_49	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2099252_50	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_51	phrog_885	74.1	1.6e-21	major tail protein	tail
UniRef90	UHGV-2099252_51	UniRef90_A0A843J9F0	206.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-2099252_51	1504822.CCNO01000012_gene492	246.0	0	N/A	N/A
structural_annotation	UHGV-2099252_51	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_52	phrog_18646	50.4	0.00000000000004	N/A	unknown function
PHROG	UHGV-2099252_54	phrog_6900	273.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2099252_54	1123312.KB904569_gene357	304.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-2099252_54	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2099252_54	MF_04138,COG5281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2099252_55	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_56	phrog_13879	197.5	0	N/A	unknown function
eggNOG-mapper	UHGV-2099252_56	1122919.KB905559_gene1344	164.0	4.28937e-42	N/A	N/A
structural_annotation	UHGV-2099252_56	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_57	phrog_18725	91.7	7.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-2099252_57	693746.OBV_18220	130.0	2.44e-36	N/A	N/A
Pfam	UHGV-2099252_58	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-2099252_58	PF20055,MF_03008,NF010730,COG3940	N/A	N/A	N/A	N/A
Pfam	UHGV-2099252_59	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-2099252_59	COG4447	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2099252_59	PF07484	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_62	phrog_6918	95.6	3.3e-28	holin	lysis
UniRef90	UHGV-2099252_62	UniRef90_A0A316QCY7	103.0	1.73e-26	Holin	N/A
eggNOG-mapper	UHGV-2099252_62	1297617.JPJD01000020_gene301	101.0	1.21e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-2099252_62	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-2099252_62	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_63	phrog_14030	143.6	1.19951e-42	N/A	unknown function
UniRef90	UHGV-2099252_63	UniRef90_R6LL81	238.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-2099252_63	1121866.AUGK01000003_gene1444	93.6	3.74e-19	amidase activity	N/A
COG	UHGV-2099252_63	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-2099252_64	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2099252_66	1160721.RBI_I00206	56.2	0.00000000057	N/A	N/A
structural_annotation	UHGV-2099252_66	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-2099252_67	phrog_3754	89.4	4e-26	N/A	unknown function
eggNOG-mapper	UHGV-2099252_67	476272.RUMHYD_01764	160.0	0	N/A	N/A
PHROG	UHGV-2099252_68	phrog_21718	92.9	2.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-2099252_68	397290.C810_05210	57.8	0.0000000324	N/A	N/A
PHROG	UHGV-2099252_69	phrog_22984	72.8	7.5e-22	N/A	unknown function
PHROG	UHGV-2099252_70	phrog_16490	110.3	1.7e-32	N/A	unknown function
eggNOG-mapper	UHGV-2099252_70	1408437.JNJN01000043_gene803	75.5	0.000000000000034	N/A	N/A