UHGV-2107138 (vOTU-033751)

Viral Genome: UHGV-2107138

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2107138
vOTU ID	vOTU-033751
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029541\|Ga0244914_100569
Associated BioSample	SAMEA3708758
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.25 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9809
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.23
Jumbo phage	No

Genome content
Genome length (bp)	37,488
GC content	40.13%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	91%
Average CDS length (bps)	585.47
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2107138_1	phrog_21718	91.6	7e-27	N/A	unknown function
eggNOG-mapper	UHGV-2107138_1	476272.RUMHYD_01768	95.5	8.81e-24	N/A	N/A
eggNOG-mapper	UHGV-2107138_2	411470.RUMGNA_03785	58.9	0.00000000441	N/A	N/A
PHROG	UHGV-2107138_4	phrog_25567	42.3	0.000000000012	N/A	unknown function
UniRef90	UHGV-2107138_4	UniRef90_A0A416SH94	85.1	8.86e-21	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2107138_4	1410625.JHWK01000002_gene45	60.5	0.0000000000121	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-2107138_4	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-2107138_4	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-2107138_5	UniRef90_A0A395X7A4	178.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-2107138_5	476272.RUMHYD_01766	120.0	3.06e-34	N/A	N/A
PHROG	UHGV-2107138_6	phrog_3754	111.4	6.5e-33	N/A	unknown function
eggNOG-mapper	UHGV-2107138_6	476272.RUMHYD_01764	181.0	0	N/A	N/A
PHROG	UHGV-2107138_7	phrog_581	248.3	0	minor head protein	head and packaging
UniRef90	UHGV-2107138_7	UniRef90_A0A395X791	698.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-2107138_7	476272.RUMHYD_01761	388.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2107138_7	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2107138_7	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2107138_7	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_12	phrog_533	292.4	0	portal protein	head and packaging
UniRef90	UHGV-2107138_12	UniRef90_A0A1C6CDM8	715.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-2107138_12	33035.JPJF01000106_gene3135	540.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-2107138_12	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2107138_13	411473.RUMCAL_02525	143.0	5.53513e-43	N/A	N/A
KOfam	UHGV-2107138_14	K06909	417.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2107138_14	phrog_3717	160.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-2107138_14	UniRef90_A0A412EKJ9	1058.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2107138_14	33035.JPJF01000106_gene3136	676.0	0	Terminase small subunit	N/A
Pfam	UHGV-2107138_14	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-2107138_14	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-2107138_14	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2107138_14	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2107138_14	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2107138_14	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_17	phrog_2776	78.0	6.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-2107138_17	1298920.KI911353_gene2703	182.0	0	N/A	N/A
structural_annotation	UHGV-2107138_17	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2107138_18	397290.C810_01492	52.8	0.000000468	N/A	N/A
structural_annotation	UHGV-2107138_20	PF06107,COG4481	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_21	phrog_8684	91.2	3.8e-27	N/A	unknown function
UniRef90	UHGV-2107138_21	UniRef90_A0A1C5WGR7	235.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-2107138_21	411470.RUMGNA_02199	88.6	3.53e-20	N/A	N/A
Pfam	UHGV-2107138_21	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-2107138_21	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_22	phrog_874	166.4	0	N/A	unknown function
UniRef90	UHGV-2107138_22	UniRef90_C4IFC5	204.0	0	Upf86.8	N/A
eggNOG-mapper	UHGV-2107138_22	632245.CLP_1629	204.0	0	N/A	N/A
structural_annotation	UHGV-2107138_22	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_23	phrog_20593	59.4	4e-17	N/A	unknown function
AcrCatalog	UHGV-2107138_23	cluster_27421	33.9	0.0000542	NA	N/A
PHROG	UHGV-2107138_24	phrog_111	162.9	0	DNA methyltransferase	other
UniRef90	UHGV-2107138_24	UniRef90_A0A174ES64	242.0	0	DNA N-6-adenine-methyltransferase of bacteriophage	N/A
eggNOG-mapper	UHGV-2107138_24	411468.CLOSCI_00567	206.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-2107138_24	oMTase_00015	214.2	0	orphan methyltransferase	RM
Pfam	UHGV-2107138_24	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-2107138_24	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-2107138_25	cluster_11670	46.2	0.00000000262	NA	N/A
PHROG	UHGV-2107138_26	phrog_4601	40.2	0.0000000000033	N/A	unknown function
structural_annotation	UHGV-2107138_26	PF17888	N/A	N/A	N/A	N/A
KOfam	UHGV-2107138_27	K19779	47.2	0.00000000000035	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-2107138_27	phrog_599	53.0	0.0000000000000086	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2107138_27	UniRef90_A0A7Z2ZD06	51.6	0.000000849	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-2107138_27	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-2107138_27	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-2107138_27	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-2107138_28	phrog_17690	126.3	1.1e-37	N/A	unknown function
eggNOG-mapper	UHGV-2107138_28	476272.RUMHYD_03925	158.0	0	N/A	N/A
UniRef90	UHGV-2107138_29	UniRef90_A0A6L8SWV5	140.0	1.16994e-41	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-2107138_29	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
COG	UHGV-2107138_29	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2107138_29	PF01726,COG0640	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2107138_30	NF010187	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_31	phrog_8841	557.1	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2107138_31	UniRef90_A0A412EL97	1223.0	0	N/A	N/A
eggNOG-mapper	UHGV-2107138_31	476272.RUMHYD_01742	772.0	0	N/A	N/A
Pfam	UHGV-2107138_31	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-2107138_31	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-2107138_31	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2107138_31	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-2107138_32	K02316	70.7	2.4e-20	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-2107138_32	phrog_11992	155.5	0	N/A	unknown function
UniRef90	UHGV-2107138_32	UniRef90_A0A412EM56	307.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-2107138_32	476272.RUMHYD_01741	181.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-2107138_32	drt-UG29	50.5	0.000000000000018	DRT	DRT
Pfam	UHGV-2107138_32	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-2107138_32	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-2107138_32	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_33	phrog_3490	96.8	2.2e-28	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2107138_33	UniRef90_UPI00156FB923	144.0	2.34e-40	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-2107138_33	397290.C810_05169	134.0	3.69e-37	ERCC4 domain	N/A
structural_annotation	UHGV-2107138_33	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_34	phrog_18107	267.1	0	N/A	unknown function
eggNOG-mapper	UHGV-2107138_34	397290.C810_05167	245.0	0	N/A	N/A
structural_annotation	UHGV-2107138_34	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_35	phrog_2872	244.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2107138_35	UniRef90_UPI0015715A02	382.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-2107138_35	1256908.HMPREF0373_00658	345.0	0	AAA domain	N/A
Pfam	UHGV-2107138_35	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-2107138_35	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-2107138_36	UniRef90_R6RDX0	77.8	1.51e-17	Arginyl-tRNA synthetase	N/A
structural_annotation	UHGV-2107138_37	NF011879	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_42	phrog_6058	52.4	0.0000000000000055	N/A	unknown function
UniRef90	UHGV-2107138_42	UniRef90_A0A2V1JQ38	62.4	0.000000000127	Glycogen synthase	N/A
eggNOG-mapper	UHGV-2107138_42	742733.HMPREF9469_05094	60.5	0.000000000121	N/A	N/A
KOfam	UHGV-2107138_44	K22300	44.1	0.0000000000041	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-2107138_44	UniRef90_A0A412ELD4	134.0	8.09e-40	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2107138_44	1235801.C822_00106	58.2	0.000000000147	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2107138_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2107138_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2107138_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_45	phrog_2967	58.3	1.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-2107138_45	UniRef90_A0A416SLU4	251.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2107138_45	476272.RUMHYD_03305	78.2	6.14e-16	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-2107138_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2107138_45	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2107138_45	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_47	phrog_8545	63.3	3.8e-18	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2107138_47	UniRef90_UPI001C0EAFDF	209.0	0	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-2107138_47	742740.HMPREF9474_03479	149.0	4.48416e-44	tRNA_anti-like	N/A
Pfam	UHGV-2107138_47	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-2107138_47	PF12869,PF10571,MF_01959,TIGR03943,COG5235	N/A	N/A	N/A	N/A
KOfam	UHGV-2107138_48	K14059	99.8	4e-29	int; integrase	N/A
PHROG	UHGV-2107138_48	phrog_1	127.7	1.2e-37	integrase	integration and excision
UniRef90	UHGV-2107138_48	UniRef90_A0A6L8SXX0	801.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-2107138_48	1235792.C808_05256	354.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2107138_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2107138_48	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2107138_48	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_49	phrog_9589	79.2	5.2e-23	endolysin	lysis
UniRef90	UHGV-2107138_49	UniRef90_A0A6N9LGV5	464.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-2107138_49	1123075.AUDP01000020_gene1533	321.0	0	pathogenesis	N/A
Pfam	UHGV-2107138_49	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-2107138_49	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-2107138_49	PF08230,PF19087	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2107138_50	NF040910	N/A	N/A	N/A	N/A
KOfam	UHGV-2107138_52	K06236	128.0	5.2e-38	COL1A; collagen type I alpha	N/A
PHROG	UHGV-2107138_52	phrog_819	141.2	0	tail protein	tail
UniRef90	UHGV-2107138_52	UniRef90_A0A416SLH3	1271.0	0	Collagen-like protein	N/A
eggNOG-mapper	UHGV-2107138_52	1508644.SFBmNL_00815	101.0	3.99e-19	N/A	N/A
Pfam	UHGV-2107138_52	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-2107138_52	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-2107138_52	PF19789,PF16323,COG2033	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_53	phrog_18444	78.4	5.9e-23	N/A	unknown function
PHROG	UHGV-2107138_54	phrog_6616	543.3	0	tail protein	tail
UniRef90	UHGV-2107138_54	UniRef90_A0A352BLY8	525.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-2107138_54	33035.JPJF01000043_gene1002	228.0	0	N/A	N/A
structural_annotation	UHGV-2107138_54	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_55	phrog_1194	84.8	7.6e-25	N/A	unknown function
structural_annotation	UHGV-2107138_55	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_56	phrog_1535	481.9	0	tail length tape measure protein	tail
UniRef90	UHGV-2107138_56	UniRef90_A0A173R880	837.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2107138_56	476272.RUMHYD_01785	835.0	0	phage tail tape measure protein	N/A
COG	UHGV-2107138_56	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2107138_56	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_57	phrog_706	128.7	4.2e-38	N/A	unknown function
UniRef90	UHGV-2107138_57	UniRef90_UPI001BAD00AD	207.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2107138_57	411459.RUMOBE_01383	350.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2107138_57	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2107138_57	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2107138_58	phrog_11299	45.2	0.0000000000018	N/A	unknown function