UHGV-2109622 (vOTU-010403)

Viral Genome: UHGV-2109622

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2109622
vOTU ID	vOTU-010403
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029590\|Ga0245099_1000305\|provirus_106_33337
Associated BioSample	SAMEA3449151
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.1 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9772
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.65
Jumbo phage	No

Genome content
Genome length (bp)	33,232
GC content	41.02%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	88%
Average CDS length (bps)	564.75
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 95.1)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-2109622_1	1042156.CXIVA_01520	67.8	0.000000000000281	N/A	N/A
PHROG	UHGV-2109622_3	phrog_199	59.2	5.7e-17	holin	lysis
UniRef90	UHGV-2109622_3	UniRef90_A0A349YRM9	236.0	0	Holin	N/A
eggNOG-mapper	UHGV-2109622_3	411468.CLOSCI_00532	183.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-2109622_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2109622_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2109622_3	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2109622_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-2109622_4	K07273	159.2	0	acm; lysozyme	N/A
PHROG	UHGV-2109622_4	phrog_291	130.2	2.1e-38	endolysin	lysis
UniRef90	UHGV-2109622_4	UniRef90_A0A174GRH8	673.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-2109622_4	397287.C807_01339	226.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-2109622_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-2109622_4	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-2109622_4	PF01183,PF01471,MF_01672,COG3757,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-2109622_7	phrog_24103	82.2	3.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-2109622_7	411473.RUMCAL_00420	85.5	8.44e-16	nuclear chromosome segregation	N/A
COG	UHGV-2109622_7	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
COG	UHGV-2109622_8	COG1262	N/A	N/A	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	N/A
PHROG	UHGV-2109622_9	phrog_15594	84.5	8.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-2109622_9	862969.SCI_1223	56.6	0.00000000401	N/A	N/A
structural_annotation	UHGV-2109622_9	PF16640,TIGR04488	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2109622_10	1235798.C817_04596	67.4	0.000000000122	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-2109622_10	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-2109622_11	phrog_11037	145.7	4.1058e-43	N/A	unknown function
UniRef90	UHGV-2109622_11	UniRef90_A0A0M6WKQ1	366.0	0	Phage_lysozyme2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2109622_11	33035.JPJF01000023_gene3229	170.0	0	N/A	N/A
Pfam	UHGV-2109622_11	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
structural_annotation	UHGV-2109622_11	PF18013	N/A	N/A	N/A	N/A
PHROG	UHGV-2109622_12	phrog_13289	372.9	0	tail protein	tail
UniRef90	UHGV-2109622_12	UniRef90_A0A350VIV3	1132.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-2109622_12	1235798.C817_02568	422.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-2109622_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2109622_12	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2109622_12	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-2109622_12	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2109622_13	phrog_33	66.0	9.8e-19	distal tail protein Dit	tail
UniRef90	UHGV-2109622_13	UniRef90_A0A350VIV2	472.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2109622_13	1232452.BAIB02000007_gene1615	211.0	0	phage tail	N/A
COG	UHGV-2109622_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2109622_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2109622_14	phrog_1272	213.6	0	tail length tape measure protein	tail
UniRef90	UHGV-2109622_14	UniRef90_A0A350VIV1	1137.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-2109622_14	1035184.HMPREF1042_1328	293.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-2109622_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-2109622_14	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-2109622_14	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-2109622_16	phrog_88	105.6	4.2e-31	major tail protein	tail
UniRef90	UHGV-2109622_16	UniRef90_A0A1Q9J4Y1	280.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2109622_16	1487921.DP68_11355	53.5	0.00000396	phage major tail protein	N/A
NCBIFam	UHGV-2109622_16	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-2109622_16	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2109622_16	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-2109622_17	phrog_5	56.2	9.8e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-2109622_17	UniRef90_D4M595	169.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-2109622_17	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-2109622_17	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2109622_18	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-2109622_19	UniRef90_A0A844KCF4	191.0	0	Phage head closure protein	N/A
structural_annotation	UHGV-2109622_19	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2109622_21	phrog_10	76.3	3.5e-22	major head protein	head and packaging
UniRef90	UHGV-2109622_21	UniRef90_UPI00156F222D	636.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-2109622_21	1232452.BAIB02000007_gene1625	485.0	0	Phage capsid family	N/A
Pfam	UHGV-2109622_21	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2109622_21	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2109622_21	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2109622_21	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2109622_22	K01358	117.4	1.6e-34	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2109622_22	phrog_94	194.9	0	head maturation protease	head and packaging
UniRef90	UHGV-2109622_22	UniRef90_A0A0M6WHX9	504.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2109622_22	1235792.C808_00085	213.0	0	Clp protease	N/A
Pfam	UHGV-2109622_22	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2109622_22	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2109622_22	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2109622_23	phrog_12	58.7	6.5e-17	portal protein	head and packaging
UniRef90	UHGV-2109622_23	UniRef90_UPI00156D5DC9	554.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2109622_23	1232452.BAIB02000007_gene1627	282.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-2109622_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2109622_23	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2109622_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2109622_24	phrog_9	242.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-2109622_24	UniRef90_D4M588	1006.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-2109622_24	1232452.BAIB02000007_gene1629	528.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-2109622_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2109622_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2109622_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2109622_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2109622_25	phrog_5110	95.8	2.9e-28	terminase small subunit	head and packaging
UniRef90	UHGV-2109622_25	UniRef90_A0A1C5LZF0	103.0	2.29e-26	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-2109622_25	349161.Dred_2608	79.3	6.66e-18	N/A	N/A
Pfam	UHGV-2109622_25	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-2109622_25	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2109622_27	phrog_36	57.1	3.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-2109622_27	UniRef90_A0A7X9DAW2	53.9	0.00000179	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-2109622_27	755731.Clo1100_3798	60.8	0.000000000885	N/A	N/A
structural_annotation	UHGV-2109622_27	PF07374,MF_00674,NF001074	N/A	N/A	N/A	N/A
PHROG	UHGV-2109622_28	phrog_3584	239.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2109622_28	UniRef90_A0A4P8IFK4	190.0	0	N/A	N/A
eggNOG-mapper	UHGV-2109622_28	411902.CLOBOL_03891	384.0	0	N/A	N/A
structural_annotation	UHGV-2109622_28	PF21578	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2109622_32	1235798.C817_04576	46.6	0.00000858	N/A	N/A
structural_annotation	UHGV-2109622_33	NF011508	N/A	N/A	N/A	N/A
PHROG	UHGV-2109622_35	phrog_15077	98.3	2.3e-29	N/A	unknown function
UniRef90	UHGV-2109622_35	UniRef90_UPI001D0741A0	200.0	0	N/A	N/A
eggNOG-mapper	UHGV-2109622_35	97139.C824_05986	321.0	0	N/A	N/A
structural_annotation	UHGV-2109622_35	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-2109622_36	phrog_8470	221.4	0	N/A	unknown function
UniRef90	UHGV-2109622_36	UniRef90_UPI000CDA663D	1028.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-2109622_36	999413.HMPREF1094_04705	556.0	0	PcfJ-like protein	N/A
Pfam	UHGV-2109622_36	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-2109622_36	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2109622_37	1235792.C808_00065	239.0	0	N/A	N/A
UniRef90	UHGV-2109622_38	UniRef90_A0A417WAJ1	115.0	7.76e-31	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2109622_38	1235800.C819_02254	116.0	5.14e-32	HNH nucleases	N/A
structural_annotation	UHGV-2109622_41	PF09486,TIGR03090,COG5420	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2109622_48	PF13560,MF_00535,NF041677,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-2109622_49	K22300	45.6	0.0000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-2109622_49	UniRef90_A0A2N5NUM8	93.6	1.12e-23	DNA-binding protein	N/A
eggNOG-mapper	UHGV-2109622_49	1256908.HMPREF0373_00646	91.7	1.18e-23	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2109622_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2109622_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2109622_49	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2109622_50	K22300	61.3	2e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2109622_50	phrog_2967	69.1	7.2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-2109622_50	UniRef90_A0A0M6WJ36	105.0	5.72e-27	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2109622_50	1256908.HMPREF0373_00643	73.6	0.00000000000000847	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-2109622_50	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-2109622_50	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
PHROG	UHGV-2109622_51	phrog_5783	287.3	0	N/A	unknown function
UniRef90	UHGV-2109622_51	UniRef90_A0A0M6WJD5	449.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-2109622_51	864563.HMPREF9166_1292	300.0	0	NYN domain	N/A
Pfam	UHGV-2109622_51	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-2109622_51	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-2109622_51	PF01936,MF_04140,TIGR00288,COG1432	N/A	N/A	N/A	N/A
KOfam	UHGV-2109622_52	K14059	145.8	5.395e-43	int; integrase	N/A
PHROG	UHGV-2109622_52	phrog_1	142.2	4.69996e-42	integrase	integration and excision
UniRef90	UHGV-2109622_52	UniRef90_A0A174GVS8	369.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-2109622_52	585501.HMPREF6123_0870	202.0	0	Phage integrase family	N/A
Pfam	UHGV-2109622_52	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2109622_52	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2109622_52	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2109622_52	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A