UHGV-2113900 (vOTU-082898)

Viral Genome: UHGV-2113900

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2113900
vOTU ID	vOTU-082898
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029573\|Ga0245101_100210\|provirus_108_53623
Associated BioSample	SAMEA3449153
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.03 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9781
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.19
Jumbo phage	No

Genome content
Genome length (bp)	53,516
GC content	45.21%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	68
CDS density	92%
Average CDS length (bps)	723.09
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-2113900_4	UniRef90_A0A1M6KQH6	89.4	6.42e-21	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-2113900_4	1027292.HMPREF9372_3406	68.2	0.000000000000672	Helix-turn-helix	N/A
Pfam	UHGV-2113900_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2113900_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-2113900_5	K07729	64.0	3e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-2113900_5	phrog_3	47.8	0.0000000000006	transcriptional repressor	transcription regulation
UniRef90	UHGV-2113900_5	UniRef90_A0A1X1KP04	59.3	0.000000000424	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2113900_5	717605.Theco_0932	53.5	0.0000000101	Helix-turn-helix	N/A
PADLOC	UHGV-2113900_5	retron_type_VI_hth_cluster2_1	54.0	0.0000000000000046	N/A	Retron
Pfam	UHGV-2113900_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2113900_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2113900_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2113900_10	phrog_14367	45.1	0.00000000000063	N/A	unknown function
UniRef90	UHGV-2113900_10	UniRef90_A0A3N5LBU6	53.5	0.000000298	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-2113900_10	1121934.AUDX01000014_gene1571	51.2	0.000000613	Lysin motif	N/A
Pfam	UHGV-2113900_10	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-2113900_10	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-2113900_10	MF_02014,NF010723	N/A	N/A	N/A	N/A
PHROG	UHGV-2113900_13	phrog_1366	298.3	0	N/A	unknown function
UniRef90	UHGV-2113900_13	UniRef90_UPI001EDFC883	364.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-2113900_13	555779.Dthio_PD3616	266.0	0	SMART AAA ATPase	N/A
Pfam	UHGV-2113900_13	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-2113900_13	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-2113900_13	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-2113900_14	phrog_72	64.1	2.2e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2113900_14	1507.HMPREF0262_00432	82.4	1.23e-17	N/A	N/A
PHROG	UHGV-2113900_15	phrog_4707	96.8	3.3e-28	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2113900_15	UniRef90_A0A1Y4H7G4	111.0	1.07e-28	Helix-turn-helix domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-2113900_15	748224.HMPREF9436_02599	111.0	1.83e-27	N/A	N/A
Pfam	UHGV-2113900_15	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-2113900_15	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2113900_15	PF02295,MF_01177,TIGR04176,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-2113900_16	phrog_270	41.6	0.000000000025	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2113900_16	1117958.PE143B_0130490	59.3	0.00000000332	DnaD domain protein	N/A
COG	UHGV-2113900_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-2113900_17	phrog_9804	40.6	0.000000000033	N/A	unknown function
UniRef90	UHGV-2113900_17	UniRef90_A0A316S7J6	102.0	4.04e-24	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-2113900_17	1280706.AUJE01000046_gene1152	70.1	0.00000000000242	N/A	N/A
KOfam	UHGV-2113900_19	K22300	40.6	0.000000000036	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
Pfam	UHGV-2113900_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2113900_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2113900_19	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2113900_26	phrog_1454	53.1	0.0000000000000054	N/A	unknown function
structural_annotation	UHGV-2113900_28	PF16857,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
KOfam	UHGV-2113900_30	K03111	133.3	2.8e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2113900_30	phrog_44	140.9	7.49975e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2113900_30	UniRef90_R6WK64	182.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2113900_30	626939.HMPREF9443_01150	169.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-2113900_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2113900_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2113900_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2113900_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2113900_30	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2113900_31	phrog_190	146.7	1.09301e-43	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2113900_31	UniRef90_UPI0018C4B0C5	131.0	3.22e-37	N/A	N/A
eggNOG-mapper	UHGV-2113900_31	1347392.CCEZ01000043_gene417	120.0	1.6e-33	N/A	N/A
Pfam	UHGV-2113900_31	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-2113900_31	PF06356	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2113900_32	401526.TcarDRAFT_1279	77.4	6.13e-16	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-2113900_32	PF05263,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-2113900_33	phrog_2329	72.4	3.6e-21	N/A	unknown function
UniRef90	UHGV-2113900_33	UniRef90_E0E217	65.5	0.000000000000767	SpoVT-AbrB domain-containing protein	N/A
eggNOG-mapper	UHGV-2113900_33	1120746.CCNL01000005_gene152	66.6	0.000000000000647	N/A	N/A
Pfam	UHGV-2113900_33	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
structural_annotation	UHGV-2113900_33	PF04014,NF007312,COG2336	N/A	N/A	N/A	N/A
PHROG	UHGV-2113900_34	phrog_13470	51.5	0.000000000000009	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2113900_34	742738.HMPREF9460_00886	90.9	6.94e-19	N/A	N/A
UniRef90	UHGV-2113900_35	UniRef90_W1I432	54.7	0.0000000236	Uncultured bacterium plasmid pRGI00226	N/A
eggNOG-mapper	UHGV-2113900_37	1280689.AUJC01000003_gene960	49.3	0.00000312	N/A	N/A
KOfam	UHGV-2113900_38	K07474	86.1	9.2e-25	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-2113900_38	phrog_51	89.7	3e-26	terminase small subunit	head and packaging
UniRef90	UHGV-2113900_38	UniRef90_UPI000833FD0A	99.4	6.57e-24	terminase small subunit	N/A
eggNOG-mapper	UHGV-2113900_38	1391647.AVSV01000003_gene1801	91.7	1.6e-21	Terminase small subunit	N/A
Pfam	UHGV-2113900_38	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-2113900_38	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-2113900_38	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-2113900_39	K06909	268.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2113900_39	phrog_3717	235.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-2113900_39	UniRef90_A0A316S7L1	766.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2113900_39	1009370.ALO_12436	565.0	0	Phage terminase, large subunit	N/A
Pfam	UHGV-2113900_39	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-2113900_39	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2113900_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2113900_39	PF04466,PF20454,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
Pfam	UHGV-2113900_40	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-2113900_40	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-2113900_41	phrog_156	436.4	0	portal protein	head and packaging
UniRef90	UHGV-2113900_41	UniRef90_F7NK66	511.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-2113900_41	401526.TcarDRAFT_1284	537.0	0	Tfp pilus assembly protein FimV	N/A
COG	UHGV-2113900_41	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-2113900_41	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-2113900_44	phrog_334	300.7	0	major head protein	head and packaging
UniRef90	UHGV-2113900_44	UniRef90_A0A316SB53	441.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-2113900_44	401526.TcarDRAFT_1286	315.0	0	N/A	N/A
Pfam	UHGV-2113900_44	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-2113900_44	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-2113900_44	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2113900_45	phrog_399	46.5	0.00000000000019	structural protein	head and packaging
Pfam	UHGV-2113900_45	PF20387	N/A	N/A	N/A	DUF6682
structural_annotation	UHGV-2113900_45	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-2113900_46	phrog_1330	52.5	0.0000000000000042	tail protein	tail
eggNOG-mapper	UHGV-2113900_46	1401067.HMPREF0872_03800	130.0	1.31e-27	cellulase activity	N/A
COG	UHGV-2113900_46	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
KOfam	UHGV-2113900_47	K16628	164.2	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-2113900_47	phrog_819	135.3	0	tail protein	tail
eggNOG-mapper	UHGV-2113900_47	1232452.BAIB02000007_gene1608	58.5	0.000000966	Collagen triple helix repeat	N/A
Pfam	UHGV-2113900_47	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-2113900_47	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-2113900_47	PF10651	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2113900_49	742735.HMPREF9467_00719	60.8	0.0000000324	N/A	N/A
structural_annotation	UHGV-2113900_50	PF16116	N/A	N/A	N/A	N/A
PHROG	UHGV-2113900_51	phrog_2837	59.3	6.6e-17	tail protein	tail
UniRef90	UHGV-2113900_51	UniRef90_A0A1Q6R2G9	231.0	0	N/A	N/A
eggNOG-mapper	UHGV-2113900_51	1286631.X805_38770	54.7	0.000000862	N/A	N/A
Pfam	UHGV-2113900_51	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-2113900_51	PF14301	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2113900_52	883156.HMPREF9282_00569	222.0	0	N/A	N/A
structural_annotation	UHGV-2113900_52	PF11134,MF_03008,NF010237,TIGR04362,COG4257	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2113900_53	PF00765,MF_02210,NF007644,COG2153	N/A	N/A	N/A	N/A
UniRef90	UHGV-2113900_54	UniRef90_A0A1G6NNF8	148.0	7.4e-39	Intein N-terminal splicing region	N/A
eggNOG-mapper	UHGV-2113900_54	1232428.CAVO010000067_gene416	154.0	3.12069e-42	N/A	N/A
PHROG	UHGV-2113900_56	phrog_10691	1090.4	0	N/A	unknown function
UniRef90	UHGV-2113900_56	UniRef90_A0A316S9L9	1960.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-2113900_56	1009370.ALO_12301	869.0	0	Type III restriction enzyme, res subunit	N/A
Pfam	UHGV-2113900_56	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
Pfam	UHGV-2113900_56	PF18789	N/A	N/A	Defence against restriction A C-terminal	DarA_C
Pfam	UHGV-2113900_56	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2113900_56	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
Pfam	UHGV-2113900_56	PF05175	N/A	N/A	Methyltransferase small domain	MTS
Pfam	UHGV-2113900_56	PF13489	N/A	N/A	Methyltransferase domain	Methyltransf_23
Pfam	UHGV-2113900_56	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-2113900_56	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
PHROG	UHGV-2113900_59	phrog_918	101.4	4.2e-30	N/A	unknown function
UniRef90	UHGV-2113900_59	UniRef90_UPI000EC62F11	155.0	0	N/A	N/A
eggNOG-mapper	UHGV-2113900_59	537007.BLAHAN_05515	142.0	2.69049e-43	N/A	N/A
Pfam	UHGV-2113900_59	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-2113900_59	PF19791	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2113900_60	1392502.JNIO01000008_gene1280	223.0	0	N/A	N/A
structural_annotation	UHGV-2113900_60	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-2113900_63	phrog_21718	46.2	0.0000000000008	N/A	unknown function
eggNOG-mapper	UHGV-2113900_64	476272.RUMHYD_01953	49.7	0.00000062	N/A	N/A
PHROG	UHGV-2113900_65	phrog_16490	82.6	1.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-2113900_65	445972.ANACOL_01880	79.3	0.00000000000000667	N/A	N/A
structural_annotation	UHGV-2113900_66	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-2113900_67	UniRef90_A0A7M1RTM1	97.8	1.32e-22	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-2113900_67	1378168.N510_03079	60.5	0.00000000758	N/A	N/A
KOfam	UHGV-2113900_68	K14717	64.1	2.3e-18	SLC39A11, ZIP11; solute carrier family 39 (zinc transporter), member 11	N/A
UniRef90	UHGV-2113900_68	UniRef90_R5U759	114.0	7.06e-31	Metal cation transporter ZIP family	N/A
eggNOG-mapper	UHGV-2113900_68	626939.HMPREF9443_00121	144.0	3.80032e-42	Metal cation transporter, ZIP family	N/A
COG	UHGV-2113900_68	COG0428	N/A	N/A	Zinc transporter ZupT	N/A