UHGV-2118839 (vOTU-059830)

Viral Genome: UHGV-2118839

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2118839
vOTU ID	vOTU-059830
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029575\|Ga0244903_100302\|provirus_71151_102212
Associated BioSample	SAMEA3708747
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9792
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.78
Jumbo phage	No

Genome content
Genome length (bp)	31,062
GC content	55.95%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	93%
Average CDS length (bps)	659.80
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2118839_1	K14059	155.6	0	int; integrase	N/A
PHROG	UHGV-2118839_1	phrog_1	155.4	0	integrase	integration and excision
UniRef90	UHGV-2118839_1	UniRef90_A0A2Z4QB94	333.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-2118839_1	626523.GCWU000342_00320	99.0	1.35e-20	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2118839_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2118839_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2118839_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-2118839_3	K23779	50.5	0.000000000000049	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-2118839_3	phrog_1373	41.7	0.000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-2118839_3	UniRef90_UPI00051ABD2F	87.8	1.31e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2118839_3	1280688.AUJB01000009_gene1936	58.2	0.00000000691	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2118839_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2118839_3	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-2118839_4	PF05973,TIGR02683,COG4683	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2118839_5	PF21227	N/A	N/A	N/A	N/A
UniRef90	UHGV-2118839_6	UniRef90_A0A374JQK3	117.0	6.06e-29	HIRAN domain-containing protein	N/A
eggNOG-mapper	UHGV-2118839_6	411471.SUBVAR_05817	126.0	9.94e-33	N/A	N/A
Pfam	UHGV-2118839_6	PF08797	N/A	N/A	HIRAN domain	HIRAN
structural_annotation	UHGV-2118839_6	PF08797	N/A	N/A	N/A	N/A
PHROG	UHGV-2118839_7	phrog_1914	97.8	2.2e-29	N/A	unknown function
UniRef90	UHGV-2118839_7	UniRef90_R6DVV5	236.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-2118839_7	1160721.RBI_I01604	140.0	2.13e-39	N/A	N/A
Pfam	UHGV-2118839_7	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2118839_7	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2118839_7	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-2118839_8	K22300	55.4	2.7e-32	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2118839_8	phrog_8	106.9	1e-31	transcriptional regulator	transcription regulation
UniRef90	UHGV-2118839_8	UniRef90_A0A8J8SBC4	77.8	0.0000000000000848	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-2118839_8	1121335.Clst_0369	77.8	5.33e-16	helix-turn-helix	N/A
Pfam	UHGV-2118839_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-2118839_8	PF15731	N/A	N/A	Antitoxin component of bacterial toxin-antitoxin system, MqsA	MqsA_antitoxin
NCBIFam	UHGV-2118839_8	TIGR03830.1	N/A	N/A	type II TA system antitoxin MqsA family protein	N/A
COG	UHGV-2118839_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2118839_8	PF01381,PF21291,NF041951,TIGR02607,COG3655,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2118839_9	K22300	50.8	0.000000000000036	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2118839_9	phrog_2967	67.7	1.6e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-2118839_9	UniRef90_A0A354M9E0	73.9	0.0000000000000502	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2118839_9	1321784.HMPREF1987_01096	60.5	0.00000000281	Peptidase S24-like	N/A
Pfam	UHGV-2118839_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2118839_9	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-2118839_10	K22300	50.3	0.000000000000046	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2118839_10	phrog_3	45.1	0.000000000004	transcriptional repressor	transcription regulation
UniRef90	UHGV-2118839_10	UniRef90_A0A0H5SHR8	70.1	0.00000000000002	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2118839_10	1321784.HMPREF1987_01097	60.1	0.0000000000318	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2118839_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2118839_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2118839_10	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2118839_12	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-2118839_13	K06284	113.5	1.3e-33	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-2118839_13	phrog_4681	100.0	8.4e-30	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2118839_13	UniRef90_UPI0018F33479	105.0	4.97e-28	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-2118839_13	268407.PWYN_12320	104.0	2.19e-28	AbrB family transcriptional regulator	N/A
Pfam	UHGV-2118839_13	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-2118839_13	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-2118839_13	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-2118839_13	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
PHROG	UHGV-2118839_16	phrog_3584	131.9	4.8e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2118839_16	411470.RUMGNA_02047	134.0	4.38e-35	N/A	N/A
structural_annotation	UHGV-2118839_16	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-2118839_17	K03700	93.8	2.2e-27	recU; recombination protein U	N/A
PHROG	UHGV-2118839_17	phrog_843	134.2	4.7e-40	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2118839_17	UniRef90_A0A1H0W5Y9	173.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-2118839_17	1203606.HMPREF1526_01884	152.0	1.21913e-43	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-2118839_17	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-2118839_17	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-2118839_17	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2118839_18	1232449.BAHV02000016_gene1829	136.0	2.41e-39	N/A	N/A
KOfam	UHGV-2118839_19	K00558	178.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2118839_19	phrog_29443	201.1	0	N/A	unknown function
UniRef90	UHGV-2118839_19	UniRef90_A0A350THX9	578.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-2118839_19	1121334.KB911073_gene1852	508.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-2118839_19	MTase_II_00020	97.5	6.7e-29	Type II methyltransferase	RM
Pfam	UHGV-2118839_19	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-2118839_19	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-2118839_19	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-2118839_20	K00558	48.5	0.000000000000081	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2118839_20	phrog_23072	127.0	1.96182e-44	DNA methyltransferase	other
UniRef90	UHGV-2118839_20	UniRef90_UPI001E2B88CF	141.0	3.77e-39	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-2118839_20	1519439.JPJG01000060_gene1872	153.0	1.12e-40	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
Pfam	UHGV-2118839_20	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-2118839_20	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-2118839_21	phrog_997	120.3	1.1e-35	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2118839_21	UniRef90_R6MCS9	110.0	7.71e-29	N/A	N/A
eggNOG-mapper	UHGV-2118839_21	1519439.JPJG01000059_gene1910	177.0	0	N/A	N/A
PHROG	UHGV-2118839_22	phrog_1029	227.7	0	N/A	unknown function
eggNOG-mapper	UHGV-2118839_22	1203606.HMPREF1526_01890	375.0	0	N/A	N/A
structural_annotation	UHGV-2118839_22	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-2118839_23	phrog_5781	66.1	4.9e-19	N/A	unknown function
UniRef90	UHGV-2118839_23	UniRef90_A0A1C6JA96	101.0	7.04e-25	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-2118839_23	1048834.TC41_1868	58.5	0.00000000612	N/A	N/A
Pfam	UHGV-2118839_23	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-2118839_23	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-2118839_24	phrog_3136	117.2	3.4e-35	N/A	unknown function
UniRef90	UHGV-2118839_24	UniRef90_UPI001C26B029	123.0	1.11e-31	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-2118839_24	97139.C824_00742	58.5	0.0000000238	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-2118839_24	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-2118839_24	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-2118839_25	phrog_36	59.4	7.5e-17	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-2118839_25	428125.CLOLEP_01806	101.0	2.04e-25	N/A	N/A
Pfam	UHGV-2118839_25	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-2118839_25	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2118839_26	phrog_17658	54.7	0.0000000000000019	N/A	unknown function
eggNOG-mapper	UHGV-2118839_26	536233.CLO_0894	70.1	0.000000000000711	N/A	N/A
structural_annotation	UHGV-2118839_26	PF18116	N/A	N/A	N/A	N/A
UniRef90	UHGV-2118839_27	UniRef90_UPI0009BF3675	62.0	0.0000000000685	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2118839_27	561177.ANHYDRO_01404	60.5	0.0000000000534	HNH nucleases	N/A
COG	UHGV-2118839_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-2118839_28	phrog_1066	83.2	2.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-2118839_28	411470.RUMGNA_02061	100.0	1.57e-25	N/A	N/A
structural_annotation	UHGV-2118839_28	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-2118839_29	phrog_9	340.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-2118839_29	UniRef90_A0A2V2GHH0	945.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-2118839_29	742740.HMPREF9474_04307	751.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-2118839_29	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2118839_29	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2118839_29	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2118839_29	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2118839_30	phrog_12	40.7	0.00000000002	portal protein	head and packaging
eggNOG-mapper	UHGV-2118839_30	411470.RUMGNA_02063	121.0	7.5e-30	Phage portal protein	N/A
COG	UHGV-2118839_30	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2118839_31	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-2118839_32	phrog_2175	68.1	1.4e-19	protein with Ig domain	other
eggNOG-mapper	UHGV-2118839_32	1219626.HMPREF1639_07450	194.0	0	N/A	N/A
structural_annotation	UHGV-2118839_32	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2118839_33	PF17388	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2118839_34	1219626.HMPREF1639_07460	89.7	2.98e-22	N/A	N/A
PHROG	UHGV-2118839_35	phrog_23464	310.5	0	N/A	unknown function
UniRef90	UHGV-2118839_35	UniRef90_A0A1C6H5M9	309.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-2118839_35	1378168.N510_03078	221.0	0	Tail tape measure protein, TP901 family	N/A
COG	UHGV-2118839_35	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-2118839_35	PF20155,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2118839_36	610130.Closa_0753	62.0	0.0000000281	phage tail	N/A
COG	UHGV-2118839_36	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2118839_36	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2118839_37	phrog_3558	193.6	0	tail protein	tail
UniRef90	UHGV-2118839_37	UniRef90_A0A3D1VAY1	423.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-2118839_37	1111121.HMPREF1247_1242	139.0	4.19e-33	Prophage endopeptidase tail	N/A
Pfam	UHGV-2118839_37	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2118839_37	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2118839_37	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2118839_37	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2118839_39	PF00629,NF033675	N/A	N/A	N/A	N/A
KOfam	UHGV-2118839_40	K16628	49.7	0.00000000000001	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-2118839_40	phrog_11541	98.2	3.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-2118839_40	1175629.AJTG01000006_gene514	122.0	3.56e-28	N/A	N/A
Pfam	UHGV-2118839_40	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-2118839_40	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
KOfam	UHGV-2118839_41	K01447	79.8	5.1e-23	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2118839_41	phrog_5182	152.2	4.2039e-45	endolysin	lysis
UniRef90	UHGV-2118839_41	UniRef90_R5AZE6	308.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-2118839_41	397288.C806_00777	210.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-2118839_41	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-2118839_41	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2118839_41	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-2118839_42	phrog_1863	62.3	1.7e-18	N/A	unknown function
UniRef90	UHGV-2118839_42	UniRef90_UPI001F223E8B	68.6	0.000000000000232	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-2118839_42	1226322.HMPREF1545_04027	68.2	0.0000000000000539	N/A	N/A
PHROG	UHGV-2118839_43	phrog_1129	63.8	2e-18	holin	lysis
UniRef90	UHGV-2118839_43	UniRef90_A0A8J6J3M3	101.0	2.03e-26	Phage holin family protein	N/A
eggNOG-mapper	UHGV-2118839_43	742740.HMPREF9474_03522	100.0	1e-26	N/A	N/A
Pfam	UHGV-2118839_43	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-2118839_43	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-2118839_44	K18908	343.7	0	mepA; multidrug efflux pump	N/A
PHROG	UHGV-2118839_44	phrog_6241	382.9	0	N/A	unknown function
UniRef90	UHGV-2118839_44	UniRef90_R5APW5	794.0	0	MATE efflux family protein	N/A
eggNOG-mapper	UHGV-2118839_44	658086.HMPREF0994_06074	499.0	0	Polysaccharide biosynthesis C-terminal domain	N/A
Pfam	UHGV-2118839_44	PF01554	N/A	N/A	MatE	MatE
NCBIFam	UHGV-2118839_44	TIGR00797.1	N/A	N/A	MATE family efflux transporter	N/A
COG	UHGV-2118839_44	COG0534	N/A	N/A	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	N/A
structural_annotation	UHGV-2118839_44	PF03023,MF_00400,NF041801,COG0534	N/A	N/A	N/A	N/A