UHGV-2124066 (vOTU-113304)

Viral Genome: UHGV-2124066

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2124066
vOTU ID	vOTU-113304
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029620\|Ga0245130_101232
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.39 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9475
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.05
Jumbo phage	No

Genome content
Genome length (bp)	26,643
GC content	29.13%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	88%
Average CDS length (bps)	633.16
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 75.39)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2124066_3	phrog_248	52.1	0.000000000000013	transcriptional activator	transcription regulation
UniRef90	UHGV-2124066_3	UniRef90_A0A174D7N9	197.0	0	Putative alternative sigma factor RpoH	N/A
eggNOG-mapper	UHGV-2124066_3	1443122.Z958_05945	101.0	5.67e-26	N/A	N/A
structural_annotation	UHGV-2124066_3	PF08281,MF_00674,TIGR01636,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-2124066_4	phrog_3928	45.4	0.000000000001	N/A	unknown function
eggNOG-mapper	UHGV-2124066_4	1414720.CBYM010000040_gene1639	94.4	3.53e-25	N/A	N/A
KOfam	UHGV-2124066_5	K04763	112.0	7e-33	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-2124066_5	phrog_216	166.4	0	integrase	integration and excision
UniRef90	UHGV-2124066_5	UniRef90_A0A1C6JHR5	376.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-2124066_5	97138.C820_00621	232.0	0	integrase family	N/A
Pfam	UHGV-2124066_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2124066_5	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2124066_5	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-2124066_6	phrog_309	116.1	2.1e-34	terminase small subunit	head and packaging
UniRef90	UHGV-2124066_6	UniRef90_A0A316MA76	217.0	0	Transposase	N/A
eggNOG-mapper	UHGV-2124066_6	457396.CSBG_01043	289.0	0	transposase activity	N/A
COG	UHGV-2124066_6	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-2124066_6	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-2124066_7	phrog_4581	124.7	5e-37	terminase small subunit	head and packaging
UniRef90	UHGV-2124066_7	UniRef90_A0A1C6JI31	494.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2124066_7	457396.CSBG_01044	429.0	0	HNH endonuclease	N/A
Pfam	UHGV-2124066_7	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2124066_7	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-2124066_7	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
PHROG	UHGV-2124066_8	phrog_1066	51.1	0.000000000000022	N/A	unknown function
UniRef90	UHGV-2124066_8	UniRef90_A0A316MDS1	129.0	1.03e-36	Zinc-binding protein	N/A
eggNOG-mapper	UHGV-2124066_8	457396.CSBG_01045	121.0	1.92e-34	N/A	N/A
structural_annotation	UHGV-2124066_8	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2124066_9	phrog_4914	62.8	5.2e-18	terminase large subunit	head and packaging
UniRef90	UHGV-2124066_9	UniRef90_W1Y973	303.0	0	Phage terminase (Fragment)	N/A
eggNOG-mapper	UHGV-2124066_9	457396.CSBG_01046	356.0	0	Terminase	N/A
Pfam	UHGV-2124066_9	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
COG	UHGV-2124066_9	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
PHROG	UHGV-2124066_10	phrog_9	210.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-2124066_10	UniRef90_A0A1C6JHP9	730.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-2124066_10	457396.CSBG_01046	660.0	0	Terminase	N/A
Pfam	UHGV-2124066_10	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2124066_10	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2124066_10	PF20441,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2124066_11	phrog_12	170.7	0	portal protein	head and packaging
UniRef90	UHGV-2124066_11	UniRef90_A0A1C6JHN8	818.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-2124066_11	457396.CSBG_01047	721.0	0	Portal protein	N/A
Pfam	UHGV-2124066_11	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2124066_11	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2124066_11	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2124066_12	K06904	124.1	1.4e-36	N/A	N/A
PHROG	UHGV-2124066_12	phrog_80	136.5	2.69999e-40	head maturation protease	head and packaging
UniRef90	UHGV-2124066_12	UniRef90_A0A1C6JHE9	377.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-2124066_12	457396.CSBG_01048	345.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-2124066_12	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-2124066_12	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-2124066_12	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-2124066_12	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-2124066_13	phrog_10	107.1	1.9e-31	major head protein	head and packaging
UniRef90	UHGV-2124066_13	UniRef90_A0A1C6JHX3	810.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-2124066_13	457396.CSBG_01049	570.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-2124066_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2124066_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2124066_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2124066_13	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2124066_14	457396.CSBG_01050	95.9	6.74e-25	N/A	N/A
PHROG	UHGV-2124066_15	phrog_1951	89.7	1.9e-26	head-tail adaptor	connector
UniRef90	UHGV-2124066_15	UniRef90_F2JNC8	82.0	3.4e-18	Prophage pi2 protein	N/A
eggNOG-mapper	UHGV-2124066_15	642492.Clole_1861	82.0	5.7e-19	head-tail adaptor	N/A
COG	UHGV-2124066_15	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-2124066_15	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2124066_16	phrog_5	53.5	0.0000000000000063	tail completion or Neck1 protein	connector
UniRef90	UHGV-2124066_16	UniRef90_UPI00105617E0	219.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2124066_16	1341151.ASZU01000004_gene257	117.0	2.51e-32	N/A	N/A
Pfam	UHGV-2124066_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-2124066_16	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-2124066_17	phrog_78	62.0	1.1e-17	tail terminator	connector
eggNOG-mapper	UHGV-2124066_17	698758.AXY_02180	110.0	3.5e-30	N/A	N/A
structural_annotation	UHGV-2124066_17	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-2124066_18	phrog_88	185.3	0	major tail protein	tail
UniRef90	UHGV-2124066_18	UniRef90_A0A1C6JHQ3	397.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-2124066_18	1497679.EP56_05760	266.0	0	phage tail protein	N/A
NCBIFam	UHGV-2124066_18	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-2124066_18	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-2124066_19	phrog_709	151.1	2.8026e-45	N/A	unknown function
UniRef90	UHGV-2124066_19	UniRef90_K6DJ01	147.0	1.58347e-43	Prophage pi2 protein 40	N/A
eggNOG-mapper	UHGV-2124066_19	365048.Q0H232_9CAUD	157.0	0	N/A	N/A
structural_annotation	UHGV-2124066_19	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-2124066_20	K03529	43.2	0.0000000000016	smc; chromosome segregation protein	N/A
PHROG	UHGV-2124066_20	phrog_1272	358.8	0	tail length tape measure protein	tail
UniRef90	UHGV-2124066_20	UniRef90_A0A1C6JHC9	1387.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-2124066_20	396034.A6XMK6_9CAUD	521.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
structural_annotation	UHGV-2124066_20	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-2124066_21	phrog_33	71.5	1.9e-20	distal tail protein Dit	tail
UniRef90	UHGV-2124066_21	UniRef90_A0A1C6JHE5	474.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2124066_21	1280689.AUJC01000011_gene1531	276.0	0	phage tail	N/A
Pfam	UHGV-2124066_21	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-2124066_21	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-2124066_21	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2124066_21	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2124066_22	phrog_1067	240.2	0	minor head protein	head and packaging
UniRef90	UHGV-2124066_22	UniRef90_UPI00187678FC	473.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-2124066_22	1280689.AUJC01000011_gene1532	412.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-2124066_22	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2124066_22	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2124066_22	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2124066_22	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
KOfam	UHGV-2124066_23	K21471	117.4	1.9e-34	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-2124066_23	phrog_329	95.1	5.6e-28	minor tail protein	tail
UniRef90	UHGV-2124066_23	UniRef90_A0A174D559	902.0	0	Phage structural protein	N/A
eggNOG-mapper	UHGV-2124066_23	1187894.I2E8W3_9CAUD	195.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-2124066_23	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
KOfam	UHGV-2124066_24	K10804	81.2	1.3e-23	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-2124066_24	phrog_8460	154.6	0	tail fiber protein	tail
UniRef90	UHGV-2124066_24	UniRef90_UPI0018AA31C6	1095.0	0	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-2124066_24	1484479.DI14_04675	253.0	0	GDSL-like Lipase/Acylhydrolase	N/A
Pfam	UHGV-2124066_24	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-2124066_24	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-2124066_24	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
UniRef90	UHGV-2124066_25	UniRef90_A0A8E1RF26	60.8	0.0000000000485	Uracil-DNA glycosylase	N/A
eggNOG-mapper	UHGV-2124066_25	445335.CBN_1458	52.4	0.0000000146	N/A	N/A
Pfam	UHGV-2124066_25	PF07878	N/A	N/A	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
PHROG	UHGV-2124066_26	phrog_1863	73.1	1.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-2124066_26	1414720.CBYM010000001_gene713	161.0	0	N/A	N/A
UniRef90	UHGV-2124066_27	UniRef90_UPI0018A9B2DB	145.0	5.32493e-44	holin	N/A
eggNOG-mapper	UHGV-2124066_27	1041504.RATSFB_0394	50.8	0.000000236	COG5546 Small integral membrane protein	N/A
COG	UHGV-2124066_27	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-2124066_28	K01448	176.1	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2124066_28	phrog_435	167.4	0	endolysin	lysis
UniRef90	UHGV-2124066_28	UniRef90_A0A1C6H888	614.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2124066_28	1414720.CBYM010000005_gene1387	166.0	0	Sporulation related domain	N/A
Pfam	UHGV-2124066_28	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-2124066_28	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-2124066_28	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2124066_29	595460.RRSWK_03491	141.0	1.83e-36	N/A	N/A
eggNOG-mapper	UHGV-2124066_32	1414720.CBYM010000001_gene718	75.9	8.48e-18	N/A	N/A
KOfam	UHGV-2124066_33	K18640	170.0	0	parM, stbA; plasmid segregation protein ParM	N/A
PHROG	UHGV-2124066_33	phrog_691	184.8	0	partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2124066_33	UniRef90_UPI0018A8BD84	531.0	0	ParM/StbA family protein	N/A
eggNOG-mapper	UHGV-2124066_33	1033737.CAEV01000075_gene568	368.0	0	StbA protein	N/A
Pfam	UHGV-2124066_33	PF17989	N/A	N/A	Actin like proteins N terminal domain	ALP_N
COG	UHGV-2124066_33	COG0849	N/A	N/A	Cell division ATPase FtsA	N/A
structural_annotation	UHGV-2124066_33	PF06723,MF_02207,NF010498,COG1077	N/A	N/A	N/A	N/A
UniRef90	UHGV-2124066_34	UniRef90_UPI001C8C7F86	63.5	0.0000000000127	circadian clock-controlled protein	N/A
UniRef90	UHGV-2124066_35	UniRef90_UPI0018AC6FBA	102.0	1.86e-27	ribbon-helix-helix protein, CopG family	N/A
Pfam	UHGV-2124066_35	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
eggNOG-mapper	UHGV-2124066_37	545697.HMPREF0216_02092	130.0	8.82e-39	N/A	N/A