UHGV-2126333 (vOTU-111989)

Viral Genome: UHGV-2126333

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2126333
vOTU ID	vOTU-111989
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029704\|Ga0245212_100203\|provirus_3_39611
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.71 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.28
Jumbo phage	No

Genome content
Genome length (bp)	36,910
GC content	54.03%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	91%
Average CDS length (bps)	488.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2126333_1	K16628	47.4	0.000000000000067	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-2126333_1	phrog_4433	98.7	1.3e-32	N/A	unknown function
eggNOG-mapper	UHGV-2126333_1	767434.Fraau_1460	53.9	0.0000029	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-2126333_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-2126333_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-2126333_1	NF007410	N/A	N/A	N/A	N/A
UniRef90	UHGV-2126333_2	UniRef90_A0A8D9UH91	317.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-2126333_2	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-2126333_2	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_4	phrog_253	85.2	8.8e-25	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2126333_4	UniRef90_A0A8D9PDS3	317.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-2126333_4	748224.HMPREF9436_03356	105.0	1.3e-26	Siphovirus Gp157	N/A
Pfam	UHGV-2126333_4	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-2126333_4	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_5	phrog_7838	143.8	1.10002e-42	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2126333_5	UniRef90_A0A8D9UGW3	431.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-2126333_5	742767.HMPREF9456_02052	190.0	0	N/A	N/A
structural_annotation	UHGV-2126333_5	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_6	phrog_1389	80.1	2.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-2126333_6	1347392.CCEZ01000060_gene3269	113.0	3.1e-31	N/A	N/A
structural_annotation	UHGV-2126333_6	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_8	phrog_7566	95.9	2.3e-28	N/A	unknown function
UniRef90	UHGV-2126333_8	UniRef90_A0A8D9UHC0	192.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-2126333_8	693746.OBV_24070	122.0	7.75e-35	N/A	N/A
KOfam	UHGV-2126333_9	K03111	129.9	3.1e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2126333_9	phrog_44	127.6	9.8e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2126333_9	UniRef90_A0A8D9PDS7	240.0	0	Single strand binding protein	N/A
eggNOG-mapper	UHGV-2126333_9	552398.HMPREF0866_01635	122.0	3.85e-34	Single-strand binding protein family	N/A
Pfam	UHGV-2126333_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2126333_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2126333_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2126333_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2126333_9	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_11	phrog_270	88.8	8.1e-26	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2126333_11	UniRef90_UPI000F093508	122.0	6.36e-30	phage replication protein	N/A
eggNOG-mapper	UHGV-2126333_11	742740.HMPREF9474_03117	117.0	7.94e-29	N/A	N/A
structural_annotation	UHGV-2126333_11	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_12	phrog_9804	70.2	3.2e-20	N/A	unknown function
UniRef90	UHGV-2126333_12	UniRef90_A0A8D9PDS1	256.0	0	Replisome organizer	N/A
eggNOG-mapper	UHGV-2126333_12	903814.ELI_3550	84.3	1.65e-18	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-2126333_12	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-2126333_12	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_14	phrog_190	110.1	1.7e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2126333_14	UniRef90_A0A8D9PDD6	271.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-2126333_14	862517.HMPREF9225_1657	81.6	4.06e-18	N/A	N/A
Pfam	UHGV-2126333_14	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-2126333_14	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-2126333_16	K00558	44.4	3e-19	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2126333_16	phrog_16427	79.0	4.2e-24	DNA methyltransferase	other
UniRef90	UHGV-2126333_16	UniRef90_A0A1C5KYC3	259.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-2126333_16	657322.FPR_26610	243.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-2126333_16	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-2126333_16	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-2126333_18	K05925	59.8	3.3e-17	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	N/A
PHROG	UHGV-2126333_18	phrog_359	218.3	0	DNA methyltransferase	other
UniRef90	UHGV-2126333_18	UniRef90_A0A3D1PJR7	289.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-2126333_18	400682.PAC_15710341	208.0	0	primary miRNA methylation	N/A
PADLOC	UHGV-2126333_18	MTase_II_00048	216.1	0	Type II methyltransferase	RM
Pfam	UHGV-2126333_18	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-2126333_18	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
structural_annotation	UHGV-2126333_18	PF05063,MF_01872,NF010253,COG4725	N/A	N/A	N/A	N/A
KOfam	UHGV-2126333_28	K22299	48.1	0.00000000000028	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-2126333_28	phrog_8	67.1	3.7e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-2126333_28	UniRef90_A0A8D9PDC4	154.0	0	Repressor protein	N/A
eggNOG-mapper	UHGV-2126333_28	1226322.HMPREF1545_00039	79.3	1.19e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-2126333_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2126333_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2126333_28	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-2126333_29	UniRef90_UPI0009523D83	167.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-2126333_29	1226322.HMPREF1545_00042	161.0	0	N/A	N/A
structural_annotation	UHGV-2126333_29	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-2126333_30	K06909	113.7	2e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2126333_30	phrog_2	118.3	1.1e-34	terminase large subunit	head and packaging
UniRef90	UHGV-2126333_30	UniRef90_A0A3D3Y0N9	423.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2126333_30	1226322.HMPREF1545_00043	393.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-2126333_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-2126333_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2126333_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2126333_30	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_31	phrog_533	380.2	0	portal protein	head and packaging
UniRef90	UHGV-2126333_31	UniRef90_A0A1C5N775	590.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-2126333_31	1226322.HMPREF1545_00044	545.0	0	N/A	N/A
Pfam	UHGV-2126333_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2126333_31	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_32	phrog_581	276.8	0	minor head protein	head and packaging
UniRef90	UHGV-2126333_32	UniRef90_UPI001D080D49	534.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-2126333_32	1226322.HMPREF1545_00046	361.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2126333_32	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2126333_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2126333_32	PF06152	N/A	N/A	N/A	N/A
Pfam	UHGV-2126333_36	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-2126333_37	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_38	phrog_544	190.9	0	major head protein	head and packaging
UniRef90	UHGV-2126333_38	UniRef90_A0A810PZM2	502.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-2126333_38	1347392.CCEZ01000005_gene1236	290.0	0	N/A	N/A
structural_annotation	UHGV-2126333_38	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_39	phrog_541	109.4	2e-32	head-tail adaptor	connector
eggNOG-mapper	UHGV-2126333_39	642492.Clole_0822	67.4	0.000000000002	N/A	N/A
PHROG	UHGV-2126333_40	phrog_3366	91.4	9.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-2126333_40	1226322.HMPREF1545_00053	154.0	0	N/A	N/A
structural_annotation	UHGV-2126333_40	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_41	phrog_556	82.0	5.9e-24	minor head protein	head and packaging
UniRef90	UHGV-2126333_41	UniRef90_UPI00195E1497	186.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-2126333_41	1226322.HMPREF1545_00054	157.0	0	Minor capsid protein	N/A
Pfam	UHGV-2126333_41	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2126333_41	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_42	phrog_3266	61.8	1e-17	tail completion	connector
UniRef90	UHGV-2126333_42	UniRef90_A0A2Z4QA01	123.0	8.73e-34	Minor capsid protein	N/A
eggNOG-mapper	UHGV-2126333_42	1232443.BAIA02000078_gene24	186.0	0	N/A	N/A
structural_annotation	UHGV-2126333_42	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_43	phrog_3099	91.2	1.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-2126333_43	1226322.HMPREF1545_00056	244.0	0	N/A	N/A
structural_annotation	UHGV-2126333_43	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_44	phrog_11299	82.2	6.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-2126333_44	693746.OBV_18160	194.0	0	N/A	N/A
structural_annotation	UHGV-2126333_44	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_45	phrog_706	127.3	1e-37	N/A	unknown function
UniRef90	UHGV-2126333_45	UniRef90_UPI000682A80B	214.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2126333_45	693746.OBV_18170	206.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2126333_45	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2126333_45	PF06854	N/A	N/A	N/A	N/A
KOfam	UHGV-2126333_46	K07448	119.4	2.8e-35	mrr; restriction system protein	N/A
PHROG	UHGV-2126333_46	phrog_19856	48.1	0.00000000000011	N/A	unknown function
UniRef90	UHGV-2126333_46	UniRef90_A0A143XQ54	154.0	9.44e-40	DNA translocase FtsK	N/A
eggNOG-mapper	UHGV-2126333_46	1235790.C805_00010	162.0	1.4013e-45	Restriction endonuclease	N/A
PADLOC	UHGV-2126333_46	ZorD1_00005	67.9	1e-19	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-2126333_46	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-2126333_46	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
structural_annotation	UHGV-2126333_46	PF04471,MF_00584,NF040854,COG1787	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_47	phrog_1535	83.4	2e-38	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2126333_47	693746.OBV_18190	365.0	0	domain protein	N/A
COG	UHGV-2126333_47	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2126333_47	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_48	phrog_1194	60.3	3.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-2126333_48	1226322.HMPREF1545_00060	238.0	0	N/A	N/A
structural_annotation	UHGV-2126333_48	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_49	phrog_13879	247.4	0	N/A	unknown function
eggNOG-mapper	UHGV-2126333_49	1226322.HMPREF1545_00061	498.0	0	N/A	N/A
structural_annotation	UHGV-2126333_49	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_50	phrog_18725	71.7	4.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-2126333_50	1235797.C816_02657	67.4	0.0000000000582	N/A	N/A
COG	UHGV-2126333_50	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
PHROG	UHGV-2126333_52	phrog_2295	49.1	1.7e-16	N/A	unknown function
Pfam	UHGV-2126333_52	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-2126333_52	PF21722	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_53	phrog_2295	56.3	2.5e-17	N/A	unknown function
Pfam	UHGV-2126333_53	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-2126333_53	PF21722	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_57	phrog_2310	55.7	4.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-2126333_57	1151292.QEW_0364	52.0	0.0000000167	N/A	N/A
PHROG	UHGV-2126333_59	phrog_4105	103.7	1e-30	N/A	unknown function
UniRef90	UHGV-2126333_59	UniRef90_A0A8D9UHA9	206.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-2126333_59	411460.RUMTOR_01326	140.0	3.32949e-42	N/A	N/A
PHROG	UHGV-2126333_60	phrog_881	92.0	2.9e-27	holin	lysis
UniRef90	UHGV-2126333_60	UniRef90_A0A8D9PDR9	100.0	1.63e-26	Holin	N/A
eggNOG-mapper	UHGV-2126333_60	742740.HMPREF9474_02251	85.5	3.24e-21	Putative phage holin Dp-1	N/A
Pfam	UHGV-2126333_60	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-2126333_60	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_61	phrog_435	78.4	1.1e-22	endolysin	lysis
UniRef90	UHGV-2126333_61	UniRef90_A0A8D9PDS4	366.0	0	Cell wall hydrolase/autolysin	N/A
eggNOG-mapper	UHGV-2126333_61	398512.JQKC01000005_gene5470	78.2	0.0000000000000123	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-2126333_61	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-2126333_61	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2126333_61	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_63	phrog_3754	107.2	1.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-2126333_63	1226322.HMPREF1545_00073	159.0	0	N/A	N/A
PHROG	UHGV-2126333_64	phrog_21718	105.8	3.7e-31	N/A	unknown function
eggNOG-mapper	UHGV-2126333_64	397290.C810_05210	70.1	0.000000000000546	N/A	N/A
PHROG	UHGV-2126333_65	phrog_22984	87.0	1.5e-25	N/A	unknown function
PHROG	UHGV-2126333_66	phrog_16490	156.3	0	N/A	unknown function
eggNOG-mapper	UHGV-2126333_66	658655.HMPREF0988_00917	125.0	3.34e-32	N/A	N/A
PHROG	UHGV-2126333_67	phrog_20016	193.2	0	N/A	unknown function
UniRef90	UHGV-2126333_67	UniRef90_A0A285PT46	199.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-2126333_67	1226322.HMPREF1545_00077	166.0	0	N/A	N/A
structural_annotation	UHGV-2126333_67	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-2126333_68	phrog_28802	66.2	3.8e-19	N/A	unknown function
structural_annotation	UHGV-2126333_68	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2126333_69	1226322.HMPREF1545_00079	89.0	1.44e-21	N/A	N/A