UHGV-2132409 (vOTU-076973)

Viral Genome: UHGV-2132409

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2132409
vOTU ID	vOTU-076973
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029623\|Ga0245138_1000327\|provirus_224_38293
Associated BioSample	SAMEA3449190
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9787
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64
Jumbo phage	No

Genome content
Genome length (bp)	38,070
GC content	40.18%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	95%
Average CDS length (bps)	660.06
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2132409_1	K14059	219.5	0	int; integrase	N/A
PHROG	UHGV-2132409_1	phrog_1	192.4	0	integrase	integration and excision
UniRef90	UHGV-2132409_1	UniRef90_A0A2N0ULT2	465.0	0	Integrase	N/A
eggNOG-mapper	UHGV-2132409_1	428125.CLOLEP_02743	315.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2132409_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2132409_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-2132409_1	PF00589,PF02920,MF_01808,TIGR02224,COG4974,COG3422	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_2	phrog_1847	527.2	0	N/A	unknown function
UniRef90	UHGV-2132409_2	UniRef90_A0A355NQ11	449.0	0	N/A	N/A
eggNOG-mapper	UHGV-2132409_2	1200557.JHWV01000022_gene2461	407.0	0	T5orf172	N/A
Pfam	UHGV-2132409_2	PF13250	N/A	N/A	N/A	DUF4041
Pfam	UHGV-2132409_2	PF10544	N/A	N/A	T5orf172 domain	T5orf172
COG	UHGV-2132409_2	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
UniRef90	UHGV-2132409_3	UniRef90_A0A374E958	63.2	0.0000000000126	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2132409_3	1232443.BAIA02000106_gene3117	70.9	0.000000000000014	N/A	N/A
structural_annotation	UHGV-2132409_3	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_4	phrog_2967	72.3	6.3e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-2132409_4	UniRef90_A0A412UNH6	211.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2132409_4	861450.HMPREF0080_02022	88.6	8.79e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2132409_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2132409_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2132409_4	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-2132409_5	K07729	50.5	0.000000000000046	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-2132409_5	phrog_6499	44.2	0.000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-2132409_5	UniRef90_A0A348ZC94	113.0	1.84e-31	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2132409_5	1235801.C822_00106	63.5	0.00000000000142	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-2132409_5	retron_type_VI_hth_cluster2_1	44.6	0.000000000004	N/A	Retron
Pfam	UHGV-2132409_5	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-2132409_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2132409_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_7	phrog_1305	139.8	1.40004e-41	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2132409_7	UniRef90_A0A413K8G3	380.0	0	N/A	N/A
eggNOG-mapper	UHGV-2132409_7	445974.CLORAM_02962	183.0	0	N/A	N/A
structural_annotation	UHGV-2132409_7	COG2250	N/A	N/A	N/A	N/A
UniRef90	UHGV-2132409_9	UniRef90_UPI0005510EBF	65.5	0.00000000000269	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-2132409_10	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_12	phrog_424	87.4	1.3e-25	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-2132409_12	693746.OBV_43240	547.0	0	N/A	N/A
COG	UHGV-2132409_12	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-2132409_12	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_13	phrog_15609	95.2	7.8e-28	N/A	unknown function
UniRef90	UHGV-2132409_13	UniRef90_A0A373VML2	166.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-2132409_13	641112.ACOK01000073_gene2872	118.0	1.43e-28	N/A	N/A
structural_annotation	UHGV-2132409_13	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_14	phrog_253	97.7	5.9e-30	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2132409_14	UniRef90_UPI0019171ADA	189.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-2132409_14	447909.A6M981_9VIRU	79.0	0.0000000000000014	Siphovirus Gp157	N/A
Pfam	UHGV-2132409_14	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-2132409_14	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_15	phrog_2872	250.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2132409_15	UniRef90_UPI001A9B3ECC	515.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-2132409_15	754027.HMPREF9554_00709	222.0	0	N/A	N/A
Pfam	UHGV-2132409_15	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-2132409_15	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-2132409_16	K19789	319.5	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-2132409_16	phrog_16	274.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2132409_16	UniRef90_A0A374N1T8	838.0	0	Helicase	N/A
eggNOG-mapper	UHGV-2132409_16	1410670.JHXF01000015_gene2270	561.0	0	helicase	N/A
PADLOC	UHGV-2132409_16	mREase_IV_00005	111.0	4.6e-34	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2132409_16	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2132409_16	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2132409_16	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2132409_16	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_17	phrog_5702	73.8	6.7e-22	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2132409_17	UniRef90_A0A374N329	182.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-2132409_17	1410670.JHXF01000015_gene2271	154.0	0	VRR_NUC	N/A
Pfam	UHGV-2132409_17	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-2132409_17	PF03838,MF_00130,NF002585,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_18	phrog_378	129.0	3.3e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2132409_18	UniRef90_A0A374ND86	279.0	0	N/A	N/A
eggNOG-mapper	UHGV-2132409_18	1410670.JHXF01000015_gene2272	164.0	0	N/A	N/A
Pfam	UHGV-2132409_18	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-2132409_18	PF05037,NF004948	N/A	N/A	N/A	N/A
KOfam	UHGV-2132409_19	K06919	105.5	5e-31	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-2132409_19	phrog_1829	846.8	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2132409_19	UniRef90_A0A2N0ULU7	1458.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-2132409_19	1410670.JHXF01000015_gene2274	876.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-2132409_19	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-2132409_19	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-2132409_19	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-2132409_19	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-2132409_19	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-2132409_19	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_23	phrog_599	41.6	0.000000000023	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-2132409_23	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-2132409_24	phrog_757	211.6	0	DNA methyltransferase	other
UniRef90	UHGV-2132409_24	UniRef90_A0A374LFE2	343.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-2132409_24	1327985.S0A061_9CAUD	268.0	0	N/A	N/A
PHROG	UHGV-2132409_26	phrog_98	84.7	9.8e-25	N/A	unknown function
UniRef90	UHGV-2132409_26	UniRef90_UPI00189E57B4	152.0	5.60519e-45	YopX family protein	N/A
eggNOG-mapper	UHGV-2132409_26	563031.HMPREF0666_01127	75.5	0.00000000000000124	YopX protein	N/A
Pfam	UHGV-2132409_26	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-2132409_26	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-2132409_26	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-2132409_27	UniRef90_UPI000E4DC4DA	147.0	7.31478e-43	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-2132409_27	PF15597	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2132409_29	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_31	phrog_309	145.1	1.49939e-43	terminase small subunit	head and packaging
UniRef90	UHGV-2132409_31	UniRef90_UPI001B3C9B19	221.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2132409_31	411470.RUMGNA_02210	148.0	9.80909e-44	transposase activity	N/A
Pfam	UHGV-2132409_31	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-2132409_31	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-2132409_31	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-2132409_32	K06909	75.9	5.4e-22	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2132409_32	phrog_2	85.6	8.8e-25	terminase large subunit	head and packaging
UniRef90	UHGV-2132409_32	UniRef90_UPI00189AB5B3	864.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-2132409_32	1304866.K413DRAFT_3034	607.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2132409_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-2132409_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2132409_32	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_33	phrog_533	333.2	0	portal protein	head and packaging
UniRef90	UHGV-2132409_33	UniRef90_UPI00189C53D6	870.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-2132409_33	1304866.K413DRAFT_3035	477.0	0	N/A	N/A
structural_annotation	UHGV-2132409_33	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_34	phrog_581	306.8	0	minor head protein	head and packaging
UniRef90	UHGV-2132409_34	UniRef90_UPI001897AC3D	991.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-2132409_34	658655.HMPREF0988_02563	347.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2132409_34	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2132409_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2132409_34	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_36	phrog_194	101.7	8.5e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-2132409_36	UniRef90_UPI0018995066	347.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-2132409_36	742765.HMPREF9457_02126	166.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-2132409_36	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2132409_36	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_37	phrog_422	233.6	0	major head protein	head and packaging
eggNOG-mapper	UHGV-2132409_37	693746.OBV_18090	386.0	0	N/A	N/A
structural_annotation	UHGV-2132409_37	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_38	phrog_541	77.8	1.2e-22	head-tail adaptor	connector
eggNOG-mapper	UHGV-2132409_38	1449050.JNLE01000003_gene3888	82.0	1.64e-18	N/A	N/A
PHROG	UHGV-2132409_39	phrog_3366	64.6	1.2e-18	N/A	unknown function
Pfam	UHGV-2132409_39	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-2132409_39	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_40	phrog_556	118.9	1.2e-35	minor head protein	head and packaging
UniRef90	UHGV-2132409_40	UniRef90_UPI00189BC4F9	358.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-2132409_40	1449050.JNLE01000003_gene3886	150.0	1.82169e-44	N/A	N/A
Pfam	UHGV-2132409_40	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2132409_40	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_41	phrog_3266	93.9	1.3e-27	tail completion	connector
eggNOG-mapper	UHGV-2132409_41	1449050.JNLE01000003_gene3885	141.0	2.64005e-41	N/A	N/A
structural_annotation	UHGV-2132409_41	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_42	phrog_3099	145.1	3.09687e-43	N/A	unknown function
eggNOG-mapper	UHGV-2132409_42	1160721.RBI_II00532	209.0	0	N/A	N/A
structural_annotation	UHGV-2132409_42	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_43	phrog_11299	102.1	5.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-2132409_43	1449050.JNLE01000003_gene3883	67.0	0.0000000000042	N/A	N/A
structural_annotation	UHGV-2132409_43	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_44	phrog_706	130.2	1.4e-38	N/A	unknown function
UniRef90	UHGV-2132409_44	UniRef90_UPI001B3C82AE	255.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2132409_44	1160721.RBI_II00530	194.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2132409_44	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2132409_44	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_48	phrog_1760	133.2	2e-39	anti-termination protein	transcription regulation
UniRef90	UHGV-2132409_48	UniRef90_UPI00189A9092	389.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-2132409_48	1567011.A0A0A7RUE5_9VIRU	148.0	9.73062e-42	DNA binding	N/A
Pfam	UHGV-2132409_48	PF10543	N/A	N/A	ORF6N domain	ORF6N
PHROG	UHGV-2132409_49	phrog_1535	478.9	0	tail length tape measure protein	tail
UniRef90	UHGV-2132409_49	UniRef90_A0A2N0ULX3	875.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2132409_49	33035.JPJF01000093_gene2243	347.0	0	phage tail tape measure protein	N/A
COG	UHGV-2132409_49	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-2132409_49	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_50	phrog_1194	62.4	6.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-2132409_50	397290.C810_05238	95.1	3.61e-23	N/A	N/A
Pfam	UHGV-2132409_50	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-2132409_50	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_51	phrog_18190	93.5	1.1e-30	N/A	unknown function
UniRef90	UHGV-2132409_51	UniRef90_UPI001C01E293	80.1	0.00000000000211	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-2132409_51	483218.BACPEC_01143	80.5	0.000000000000237	N/A	N/A
structural_annotation	UHGV-2132409_51	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2132409_52	PF01664	N/A	N/A	N/A	N/A
KOfam	UHGV-2132409_54	K01447	114.0	1.7e-33	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2132409_54	phrog_833	178.8	0	endolysin	lysis
UniRef90	UHGV-2132409_54	UniRef90_R6MSP5	625.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2132409_54	428125.CLOLEP_01782	181.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-2132409_54	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-2132409_54	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-2132409_54	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-2132409_55	phrog_199	75.8	5.2e-22	holin	lysis
UniRef90	UHGV-2132409_55	UniRef90_UPI00164BD6C2	260.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-2132409_55	1160721.RBI_I01565	150.0	8.40779e-45	Bacteriophage holin family	N/A
Pfam	UHGV-2132409_55	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2132409_55	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2132409_55	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2132409_55	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A