UHGV-2148968 (vOTU-007897)

Viral Genome: UHGV-2148968

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2148968
vOTU ID	vOTU-007897
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029739\|Ga0245187_100667\|provirus_8509_45537
Associated BioSample	SAMEA3449239
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.95 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9701
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.29
Jumbo phage	No

Genome content
Genome length (bp)	37,029
GC content	38.12%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	92%
Average CDS length (bps)	607.82
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.95)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2148968_1	K07816	66.1	7.9e-19	E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]	N/A
UniRef90	UHGV-2148968_1	UniRef90_W7DLC8	50.8	0.000000709	GTP-pyrophosphokinase	N/A
eggNOG-mapper	UHGV-2148968_1	411469.EUBHAL_01337	130.0	1.66e-37	Region found in RelA / SpoT proteins	N/A
Pfam	UHGV-2148968_1	PF04607	N/A	N/A	Region found in RelA / SpoT proteins	RelA_SpoT
COG	UHGV-2148968_1	COG2357	N/A	N/A	ppGpp synthetase catalytic domain (RelA/SpoT-type nucleotidyltranferase)	N/A
PHROG	UHGV-2148968_2	phrog_29601	100.0	1.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-2148968_2	411468.CLOSCI_01508	86.3	1.91e-21	N/A	N/A
PHROG	UHGV-2148968_3	phrog_134	55.3	9.2e-16	N/A	unknown function
UniRef90	UHGV-2148968_3	UniRef90_B0NDH9	87.8	5.33e-22	XkdX family protein	N/A
eggNOG-mapper	UHGV-2148968_3	411468.CLOSCI_01507	87.8	8.95e-23	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-2148968_3	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-2148968_3	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-2148968_3	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_4	phrog_20201	60.1	4e-17	N/A	unknown function
KOfam	UHGV-2148968_5	K00986	115.8	4.1e-34	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-2148968_5	phrog_1423	221.3	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2148968_5	UniRef90_A0A6N7YG55	879.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-2148968_5	411468.CLOSCI_01505	300.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-2148968_5	icity0040	71.2	1.6e-21	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-2148968_5	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-2148968_5	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-2148968_5	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_6	phrog_5302	245.5	0	tail protein	tail
eggNOG-mapper	UHGV-2148968_6	742741.HMPREF9475_00438	332.0	0	N/A	N/A
structural_annotation	UHGV-2148968_6	COG1262	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2148968_7	411468.CLOSCI_01503	51.6	0.00000435	N/A	N/A
Pfam	UHGV-2148968_7	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
eggNOG-mapper	UHGV-2148968_8	657322.FPR_22010	73.2	0.0000000000537	N/A	N/A
PHROG	UHGV-2148968_9	phrog_9994	179.9	0	N/A	unknown function
UniRef90	UHGV-2148968_9	UniRef90_A0A173RZM4	612.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-2148968_9	469378.Ccur_02620	106.0	9.31e-24	N/A	N/A
structural_annotation	UHGV-2148968_9	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_10	phrog_538	127.1	0	minor tail protein	tail
UniRef90	UHGV-2148968_10	UniRef90_W0FH81	345.0	0	Phage head fiber protein	N/A
eggNOG-mapper	UHGV-2148968_10	1256908.HMPREF0373_00466	233.0	0	N/A	N/A
Pfam	UHGV-2148968_10	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-2148968_10	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_11	phrog_33	59.5	9.1e-17	distal tail protein Dit	tail
UniRef90	UHGV-2148968_11	UniRef90_UPI0015709E93	178.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-2148968_11	411461.DORFOR_01176	174.0	0	N/A	N/A
structural_annotation	UHGV-2148968_11	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-2148968_12	K10421	42.9	0.0000000000022	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-2148968_12	phrog_1272	342.7	0	tail length tape measure protein	tail
UniRef90	UHGV-2148968_12	UniRef90_A0A6N7Y0D1	1215.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-2148968_12	397290.C810_00429	221.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-2148968_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-2148968_12	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-2148968_12	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2148968_13	1121866.AUGK01000006_gene886	55.1	0.0000000306	N/A	N/A
UniRef90	UHGV-2148968_14	UniRef90_A0A316S919	202.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2148968_14	1384484.AEQU_1175	160.0	0	N/A	N/A
structural_annotation	UHGV-2148968_14	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_15	phrog_5509	76.4	3.4e-22	neck protein	connector
UniRef90	UHGV-2148968_15	UniRef90_W0FMR6	119.0	5.92e-32	Gp9 protein	N/A
eggNOG-mapper	UHGV-2148968_15	1027396.LMOSA_21450	65.1	0.0000000000141	N/A	N/A
structural_annotation	UHGV-2148968_15	TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2148968_16	1121866.AUGK01000006_gene883	70.9	0.0000000000000269	N/A	N/A
structural_annotation	UHGV-2148968_16	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_17	phrog_5635	63.8	2.8e-18	head-tail adaptor	connector
UniRef90	UHGV-2148968_17	UniRef90_A0A1I3QJF5	81.6	7.66e-18	Phage head-tail adaptor, putative, SPP1 family	N/A
eggNOG-mapper	UHGV-2148968_17	1384484.AEQU_1178	53.1	0.000000219	N/A	N/A
structural_annotation	UHGV-2148968_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_19	phrog_10	89.2	4.1e-26	major head protein	head and packaging
UniRef90	UHGV-2148968_19	UniRef90_A0A173S099	749.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-2148968_19	553184.ATORI0001_1179	298.0	0	Phage capsid family	N/A
Pfam	UHGV-2148968_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2148968_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2148968_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2148968_19	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2148968_20	K01358	120.2	2.2e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2148968_20	phrog_94	195.8	0	head maturation protease	head and packaging
UniRef90	UHGV-2148968_20	UniRef90_A0A6N7Y0D2	480.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2148968_20	610130.Closa_0743	213.0	0	Clp protease	N/A
Pfam	UHGV-2148968_20	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2148968_20	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2148968_20	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_21	phrog_12	98.8	4.4e-29	portal protein	head and packaging
UniRef90	UHGV-2148968_21	UniRef90_A0A173RYU7	755.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-2148968_21	349161.Dred_2606	222.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-2148968_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-2148968_21	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-2148968_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2148968_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_22	phrog_9	241.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-2148968_22	UniRef90_A0A173RYT5	1127.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-2148968_22	610130.Closa_0741	646.0	0	Phage Terminase	N/A
Pfam	UHGV-2148968_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2148968_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2148968_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_23	phrog_5110	108.2	3.6e-32	terminase small subunit	head and packaging
UniRef90	UHGV-2148968_23	UniRef90_UPI001124010C	115.0	2.6e-31	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-2148968_23	349161.Dred_2608	97.8	5.67e-25	N/A	N/A
structural_annotation	UHGV-2148968_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_24	phrog_119	62.3	6.5e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2148968_24	UniRef90_A0A173RYP5	259.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2148968_24	936140.AEOT01000014_gene1352	90.9	5.51e-22	HNH nucleases	N/A
Pfam	UHGV-2148968_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2148968_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-2148968_25	K07273	105.9	4.9e-31	acm; lysozyme	N/A
PHROG	UHGV-2148968_25	phrog_291	119.9	2.6e-35	endolysin	lysis
UniRef90	UHGV-2148968_25	UniRef90_A0A173RZN4	607.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-2148968_25	411469.EUBHAL_01497	241.0	0	lysozyme activity	N/A
Pfam	UHGV-2148968_25	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-2148968_25	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-2148968_25	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-2148968_25	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_26	phrog_443	63.3	6.1e-18	holin	lysis
UniRef90	UHGV-2148968_26	UniRef90_UPI001BA9F6DF	89.4	9.73e-22	holin	N/A
eggNOG-mapper	UHGV-2148968_26	1235802.C823_05612	84.7	1.13e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-2148968_26	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-2148968_26	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_27	phrog_937	53.3	0.000000000000005	hemolysin	other
UniRef90	UHGV-2148968_28	UniRef90_A0A173S152	394.0	0	RNA_pol_Rpb1_2 domain-containing protein	N/A
Pfam	UHGV-2148968_28	PF00623	N/A	N/A	RNA polymerase Rpb1, domain 2	RNA_pol_Rpb1_2
structural_annotation	UHGV-2148968_28	PF03412	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_29	phrog_36	54.9	0.0000000000000017	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-2148968_29	742765.HMPREF9457_02116	85.1	9.82e-19	N/A	N/A
structural_annotation	UHGV-2148968_29	PF02996	N/A	N/A	N/A	N/A
UniRef90	UHGV-2148968_32	UniRef90_A0A1C5MB66	207.0	0	N/A	N/A
Pfam	UHGV-2148968_32	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-2148968_32	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-2148968_34	K03497	60.0	2.4e-17	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-2148968_34	phrog_15982	467.8	0	N/A	unknown function
UniRef90	UHGV-2148968_34	UniRef90_A0A6N7YJE4	815.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-2148968_34	742741.HMPREF9475_00414	375.0	0	N/A	N/A
Pfam	UHGV-2148968_34	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-2148968_34	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2148968_34	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
KOfam	UHGV-2148968_36	K03496	159.5	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-2148968_36	phrog_164	152.5	2.8026e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2148968_36	UniRef90_A0A173RYC6	505.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-2148968_36	411468.CLOSCI_01475	357.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-2148968_36	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-2148968_36	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-2148968_36	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-2148968_37	phrog_17690	119.5	1.1e-35	N/A	unknown function
UniRef90	UHGV-2148968_37	UniRef90_A0A6L5XWF4	123.0	3.17e-33	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-2148968_37	1235798.C817_03495	119.0	7.19e-33	N/A	N/A
PHROG	UHGV-2148968_38	phrog_3584	274.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2148968_38	UniRef90_A0A4P8IFK4	309.0	0	N/A	N/A
eggNOG-mapper	UHGV-2148968_38	411468.CLOSCI_01469	385.0	0	N/A	N/A
structural_annotation	UHGV-2148968_38	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-2148968_49	K18830	80.1	3.7e-23	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-2148968_49	phrog_8	58.9	7.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-2148968_49	UniRef90_A0A173S0H0	241.0	0	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-2148968_49	445972.ANACOL_03315	137.0	2.63e-40	N/A	N/A
Pfam	UHGV-2148968_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2148968_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2148968_49	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2148968_51	K07727	50.1	0.000000000000062	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-2148968_51	phrog_3	41.1	0.000000000062	transcriptional repressor	transcription regulation
UniRef90	UHGV-2148968_51	UniRef90_A0A173RY24	130.0	3.05e-38	HTH-type transcriptional regulator sinR	N/A
eggNOG-mapper	UHGV-2148968_51	411468.CLOSCI_01455	97.4	9.46e-26	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-2148968_51	retron_type_VI_hth_cluster2_1	40.0	0.0000000001	N/A	Retron
Pfam	UHGV-2148968_51	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
eggNOG-mapper	UHGV-2148968_52	1042156.CXIVA_01360	60.8	0.0000000775	N/A	N/A
KOfam	UHGV-2148968_53	K06400	294.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2148968_53	phrog_95	321.6	0	integrase	integration and excision
UniRef90	UHGV-2148968_53	UniRef90_A0A173RXF2	901.0	0	Transposase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-2148968_53	673832.D2IYS3_9CAUD	382.0	0	Recombinase	N/A
Pfam	UHGV-2148968_53	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2148968_53	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-2148968_53	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
structural_annotation	UHGV-2148968_53	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-2148968_54	K07816	111.9	9.2e-33	E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]	N/A
UniRef90	UHGV-2148968_54	UniRef90_A0A173RXY6	234.0	0	GTP pyrophosphokinase ywaC	N/A
eggNOG-mapper	UHGV-2148968_54	411469.EUBHAL_01337	257.0	0	Region found in RelA / SpoT proteins	N/A
Pfam	UHGV-2148968_54	PF04607	N/A	N/A	Region found in RelA / SpoT proteins	RelA_SpoT
COG	UHGV-2148968_54	COG2357	N/A	N/A	ppGpp synthetase catalytic domain (RelA/SpoT-type nucleotidyltranferase)	N/A
UniRef90	UHGV-2148968_55	UniRef90_R5B4J7	63.9	0.0000000000927	Tetratricopeptide repeat protein	N/A
eggNOG-mapper	UHGV-2148968_55	411469.EUBHAL_01335	192.0	0	N/A	N/A
COG	UHGV-2148968_55	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
UniRef90	UHGV-2148968_56	UniRef90_A0A414B784	384.0	0	HEAT repeat domain-containing protein	N/A
eggNOG-mapper	UHGV-2148968_56	411469.EUBHAL_01334	442.0	0	HEAT repeats	N/A
Pfam	UHGV-2148968_56	PF13646	N/A	N/A	HEAT repeats	HEAT_2
COG	UHGV-2148968_56	COG1413	N/A	N/A	HEAT repeat	N/A