UHGV-2152262 (vOTU-118371)

Viral Genome: UHGV-2152262

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2152262
vOTU ID	vOTU-118371
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029739\|Ga0245187_101082
Associated BioSample	SAMEA3449239
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.64 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9601
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.15
Jumbo phage	No

Genome content
Genome length (bp)	28,282
GC content	60.87%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	28
CDS density	92%
Average CDS length (bps)	932.79
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.64)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2152262_1	K22300	46.5	0.00000000000081	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2152262_1	phrog_8	40.5	0.000000000063	transcriptional regulator	transcription regulation
UniRef90	UHGV-2152262_1	UniRef90_A0A417BTB8	67.0	0.0000000000000679	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2152262_1	97139.C824_01497	61.6	0.0000000000361	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2152262_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2152262_1	COG1395	N/A	N/A	Predicted transcriptional regulator	N/A
structural_annotation	UHGV-2152262_1	PF12844,TIGR03070,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2152262_2	phrog_2323	108.7	2.2e-32	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2152262_2	UniRef90_E7GJY4	166.0	0	Phage endonuclease	N/A
eggNOG-mapper	UHGV-2152262_2	742740.HMPREF9474_01229	166.0	0	HNH endonuclease	N/A
Pfam	UHGV-2152262_2	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2152262_2	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-2152262_2	PF01844,COG1403	N/A	N/A	N/A	N/A
UniRef90	UHGV-2152262_3	UniRef90_A0A1Y3YFV9	172.0	0	GIY-YIG domain-containing protein	N/A
Pfam	UHGV-2152262_3	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
COG	UHGV-2152262_3	COG2161	N/A	N/A	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	N/A
PHROG	UHGV-2152262_4	phrog_12	381.7	0	portal protein	head and packaging
UniRef90	UHGV-2152262_4	UniRef90_A0A1Q6PTQ2	685.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2152262_4	1121289.JHVL01000007_gene2755	520.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-2152262_4	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-2152262_4	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-2152262_4	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2152262_4	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2152262_5	K01358	114.5	1.3e-33	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2152262_5	phrog_94	170.1	0	head maturation protease	head and packaging
UniRef90	UHGV-2152262_5	UniRef90_A0A2V2FK72	246.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2152262_5	1408422.JHYF01000021_gene981	143.0	1.76e-39	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2152262_5	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2152262_5	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2152262_5	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2152262_6	phrog_10	336.3	0	major head protein	head and packaging
UniRef90	UHGV-2152262_6	UniRef90_A0A2V2FGW4	526.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2152262_6	696281.Desru_3549	504.0	0	TIGRFAM phage major capsid protein, HK97 family	N/A
Pfam	UHGV-2152262_6	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2152262_6	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2152262_6	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2152262_6	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2152262_7	phrog_12102	58.4	8.4e-17	N/A	unknown function
UniRef90	UHGV-2152262_7	UniRef90_A0A7X7FI45	117.0	2.16e-32	Head fiber protein	N/A
PHROG	UHGV-2152262_8	phrog_40	80.6	1.3e-23	head-tail adaptor Ad1	connector
UniRef90	UHGV-2152262_8	UniRef90_A0A7X7FKE4	139.0	2.78004e-41	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-2152262_8	1121116.KB894776_gene1858	62.8	0.0000000000108	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-2152262_8	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-2152262_8	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-2152262_8	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-2152262_9	phrog_25	54.3	0.0000000000000022	head closure Hc1	connector
UniRef90	UHGV-2152262_9	UniRef90_A0A7X7FI16	221.0	0	Phage head closure protein	N/A
eggNOG-mapper	UHGV-2152262_9	1027292.HMPREF9372_1256	56.2	0.0000000133	Phage head-tail adaptor	N/A
Pfam	UHGV-2152262_9	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-2152262_9	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-2152262_9	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-2152262_9	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2152262_10	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-2152262_11	phrog_5	65.7	1.1e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-2152262_11	UniRef90_UPI0012B92E9C	56.2	0.00000023	HK97 gp10 family phage protein	N/A
Pfam	UHGV-2152262_11	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-2152262_11	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-2152262_11	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-2152262_12	phrog_88	148.6	2.94273e-44	major tail protein	tail
UniRef90	UHGV-2152262_12	UniRef90_A0A7C6BMC6	333.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2152262_12	1382315.JPOI01000001_gene276	121.0	9.38e-31	Phage major tail protein phi13	N/A
NCBIFam	UHGV-2152262_12	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-2152262_12	COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2152262_12	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2152262_13	1196031.ALEG01000039_gene1823	49.3	0.00000596	N/A	N/A
KOfam	UHGV-2152262_14	K10421	57.1	3.7e-17	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-2152262_14	phrog_13339	344.6	0	tail length tape measure protein	tail
UniRef90	UHGV-2152262_14	UniRef90_A0A1Q6PTR6	1831.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-2152262_14	999425.HMPREF9186_02045	303.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-2152262_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-2152262_14	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-2152262_14	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-2152262_14	PF10145,TIGR01760	N/A	N/A	N/A	N/A
UniRef90	UHGV-2152262_15	UniRef90_A0A413G2U0	95.1	7.84e-24	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2152262_15	1131462.DCF50_p110	89.0	3.68e-22	sequence-specific DNA binding	N/A
COG	UHGV-2152262_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2152262_15	PF01381,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-2152262_16	K22300	49.1	0.00000000000011	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2152262_16	phrog_3	42.3	0.00000000003	transcriptional repressor	transcription regulation
UniRef90	UHGV-2152262_16	UniRef90_A0A7I8D1B6	101.0	2.29e-26	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2152262_16	97138.C820_01701	85.5	6.73e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2152262_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2152262_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2152262_16	PF01381,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2152262_18	phrog_33	62.0	1.6e-17	distal tail protein Dit	tail
UniRef90	UHGV-2152262_18	UniRef90_A0A7C6FS63	320.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2152262_18	203119.Cthe_1708	146.0	1.15999e-40	Phage tail protein	N/A
COG	UHGV-2152262_18	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2152262_18	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-2152262_19	K07473	61.2	2.9e-17	dinJ; DNA-damage-inducible protein J	N/A
PHROG	UHGV-2152262_19	phrog_2737	63.9	1.8e-18	N/A	unknown function
UniRef90	UHGV-2152262_19	UniRef90_UPI0006C5AC41	92.0	1.38e-22	type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
eggNOG-mapper	UHGV-2152262_19	1499680.CCFE01000027_gene3360	84.0	3.91e-20	RelB antitoxin	N/A
Pfam	UHGV-2152262_19	PF04221	N/A	N/A	RelB antitoxin	RelB
NCBIFam	UHGV-2152262_19	TIGR02384.1	N/A	N/A	type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
COG	UHGV-2152262_19	COG3077	N/A	N/A	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	N/A
PHROG	UHGV-2152262_20	phrog_32804	41.2	0.000000000015	N/A	unknown function
UniRef90	UHGV-2152262_20	UniRef90_A0A3D4QB94	308.0	0	N/A	N/A
eggNOG-mapper	UHGV-2152262_20	887325.HMPREF0381_2362	219.0	0	N/A	N/A
PADLOC	UHGV-2152262_20	darT	133.3	2.9e-39	N/A	N/A
Pfam	UHGV-2152262_20	PF14487	N/A	N/A	ssDNA thymidine ADP-ribosyltransferase, DarT	DarT
structural_annotation	UHGV-2152262_20	PF14487	N/A	N/A	N/A	N/A
KOfam	UHGV-2152262_21	K09388	48.1	0.00000000000016	N/A	N/A
PHROG	UHGV-2152262_21	phrog_335	131.8	3.8e-39	phosphatase	other
UniRef90	UHGV-2152262_21	UniRef90_A0A3D4QBY5	583.0	0	Appr-1-p processing protein	N/A
eggNOG-mapper	UHGV-2152262_21	641112.ACOK01000083_gene3282	432.0	0	Macro domain	N/A
PADLOC	UHGV-2152262_21	darG	301.4	0	N/A	N/A
Pfam	UHGV-2152262_21	PF01661	N/A	N/A	Macro domain	Macro
COG	UHGV-2152262_21	COG3465	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2152262_21	PF20016,MF_01205,NF001666,COG2110,COG3465	N/A	N/A	N/A	N/A
PHROG	UHGV-2152262_22	phrog_1067	210.5	0	minor head protein	head and packaging
UniRef90	UHGV-2152262_22	UniRef90_A0A7C6FP44	802.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-2152262_22	386415.NT01CX_2159	182.0	2.8026e-45	Phage minor structural protein	N/A
Pfam	UHGV-2152262_22	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
Pfam	UHGV-2152262_22	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2152262_22	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2152262_22	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2152262_22	PF14594,PF06848,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-2152262_23	K18454	49.0	0.000000000000011	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
eggNOG-mapper	UHGV-2152262_23	1195236.CTER_2814	100.0	2.88e-22	chitin catabolic process	N/A
Pfam	UHGV-2152262_23	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
COG	UHGV-2152262_23	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-2152262_24	phrog_199	98.5	6e-29	holin	lysis
UniRef90	UHGV-2152262_24	UniRef90_A0A2V2FVQ7	286.0	0	Holin	N/A
eggNOG-mapper	UHGV-2152262_24	411468.CLOSCI_00187	184.0	0	COG COG4824 Phage-related holin (Lysis protein)	N/A
Pfam	UHGV-2152262_24	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2152262_24	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2152262_24	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2152262_24	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-2152262_26	K00986	297.4	0	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-2152262_26	phrog_1423	311.8	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2152262_26	UniRef90_A0A7M2RE17	655.0	0	Group II intron reverse transcriptase/maturase	N/A
eggNOG-mapper	UHGV-2152262_26	657322.FPR_13990	650.0	0	Group II intron, maturase-specific domain	N/A
PADLOC	UHGV-2152262_26	PtuC2_00002	728.6	0	Reverse transcriptase	Septu
Pfam	UHGV-2152262_26	PF13655	N/A	N/A	N-terminal domain of reverse transcriptase	RVT_N
Pfam	UHGV-2152262_26	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
Pfam	UHGV-2152262_26	PF08388	N/A	N/A	Group II intron, maturase-specific domain	GIIM
NCBIFam	UHGV-2152262_26	TIGR04416.1	N/A	N/A	group II intron reverse transcriptase/maturase	N/A
COG	UHGV-2152262_26	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-2152262_26	PF00078,PF01348,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-2152262_27	phrog_2649	58.6	7.9e-17	endolysin	lysis
UniRef90	UHGV-2152262_27	UniRef90_A0A1Q6PTR5	385.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-2152262_27	411473.RUMCAL_00214	93.2	7.58e-18	NLP P60 protein	N/A
Pfam	UHGV-2152262_27	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-2152262_27	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-2152262_27	PF01471,PF19087,NF041850,TIGR02219,COG3409,COG3103,COG0791	N/A	N/A	N/A	N/A
UniRef90	UHGV-2152262_28	UniRef90_A0A2V2G0W6	115.0	1.01e-32	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2152262_28	1203606.HMPREF1526_01024	98.6	1.25e-26	Cro/C1-type HTH DNA-binding domain	N/A