UHGV-2157670 (vOTU-014638)

Viral Genome: UHGV-2157670

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2157670
vOTU ID	vOTU-014638
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029772\|Ga0245166_100137\|provirus_1_47391
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.28 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9717
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.96
Jumbo phage	No

Genome content
Genome length (bp)	39,608
GC content	41.88%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	93%
Average CDS length (bps)	642.79
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 94.28)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2157670_1	K14056	41.3	0.000000000024	puuR; HTH-type transcriptional regulator, repressor for puuD	N/A
PHROG	UHGV-2157670_1	phrog_3	46.3	0.0000000000016	transcriptional repressor	transcription regulation
UniRef90	UHGV-2157670_1	UniRef90_R5ZAU1	94.0	6.89e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-2157670_1	556261.HMPREF0240_01268	81.6	1.15e-17	Helix-turn-helix	N/A
Pfam	UHGV-2157670_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2157670_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-2157670_2	UniRef90_UPI000E52936A	110.0	2.15e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2157670_2	887929.HMP0721_1290	84.0	1.55e-20	Helix-turn-helix domain of resolvase	N/A
Pfam	UHGV-2157670_2	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
structural_annotation	UHGV-2157670_2	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_4	phrog_3292	55.5	9.7e-16	N/A	unknown function
UniRef90	UHGV-2157670_4	UniRef90_UPI0012F79817	110.0	2.35e-30	KTSC domain-containing protein	N/A
eggNOG-mapper	UHGV-2157670_4	1408823.AXUS01000024_gene2707	87.4	3.85e-22	KTSC domain	N/A
Pfam	UHGV-2157670_4	PF13619	N/A	N/A	KTSC domain	KTSC
COG	UHGV-2157670_4	COG4249	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2157670_4	PF13619	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_8	phrog_434	158.4	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2157670_8	UniRef90_A0A1C5PRT3	357.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-2157670_8	1095750.HMPREF9970_1677	313.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-2157670_8	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-2157670_8	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-2157670_8	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-2157670_8	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_9	phrog_674	168.4	0	N/A	unknown function
UniRef90	UHGV-2157670_9	UniRef90_A0A844E1E5	270.0	0	N/A	N/A
eggNOG-mapper	UHGV-2157670_9	1095750.HMPREF9970_1676	135.0	2.64e-35	N/A	N/A
Pfam	UHGV-2157670_9	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-2157670_9	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-2157670_12	K07455	179.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-2157670_12	phrog_148	191.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2157670_12	UniRef90_A0A7C6P2G6	335.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-2157670_12	742765.HMPREF9457_02107	305.0	0	RecT family	N/A
Pfam	UHGV-2157670_12	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-2157670_12	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-2157670_12	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-2157670_12	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_13	phrog_997	142.3	1.90016e-42	replication terminator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2157670_13	1298920.KI911353_gene2719	135.0	4.91e-39	N/A	N/A
PHROG	UHGV-2157670_14	phrog_1029	304.0	0	N/A	unknown function
UniRef90	UHGV-2157670_14	UniRef90_A0A3D5WKT6	293.0	0	Peptidase S59 domain-containing protein	N/A
eggNOG-mapper	UHGV-2157670_14	1232453.BAIF02000057_gene1140	270.0	0	N/A	N/A
structural_annotation	UHGV-2157670_14	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_15	phrog_986	92.5	3.5e-27	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2157670_15	UniRef90_UPI000923B1E1	98.2	1.59e-24	N/A	N/A
eggNOG-mapper	UHGV-2157670_15	1582152.A0A0A8WI22_9CAUD	74.3	0.00000000000000229	N/A	N/A
Pfam	UHGV-2157670_15	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-2157670_15	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_16	phrog_10714	57.8	1.5e-16	N/A	unknown function
UniRef90	UHGV-2157670_16	UniRef90_R5R2P7	80.1	1.86e-17	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-2157670_16	537007.BLAHAN_05460	112.0	4.33e-31	N/A	N/A
PHROG	UHGV-2157670_17	phrog_190	121.0	8.5e-36	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2157670_17	UniRef90_A0A6N7XIA3	134.0	1.42e-38	N/A	N/A
eggNOG-mapper	UHGV-2157670_17	563031.HMPREF0666_01122	97.4	2.23e-24	N/A	N/A
Pfam	UHGV-2157670_17	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-2157670_17	PF06356	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2157670_19	1203606.HMPREF1526_01684	89.7	7.36e-22	N/A	N/A
UniRef90	UHGV-2157670_20	UniRef90_A0A2V2C978	57.0	0.0000000155	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2157670_20	1262914.BN533_00645	46.6	0.00000884	Transcriptional	N/A
Pfam	UHGV-2157670_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2157670_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-2157670_21	411461.DORFOR_01157	63.5	0.000000000794	N/A	N/A
COG	UHGV-2157670_21	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-2157670_21	PF02452,NF010262,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_22	phrog_10469	218.3	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2157670_22	UniRef90_A0A2N5NVH3	351.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-2157670_22	411470.RUMGNA_02197	339.0	0	phage replisome	N/A
Pfam	UHGV-2157670_22	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-2157670_22	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-2157670_22	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_23	phrog_36	66.2	5.6e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-2157670_23	UniRef90_UPI000368796A	98.6	1.38e-23	N/A	N/A
eggNOG-mapper	UHGV-2157670_23	1120978.KB894081_gene99	98.6	2.37e-24	N/A	N/A
Pfam	UHGV-2157670_23	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-2157670_23	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-2157670_23	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_25	phrog_8684	98.3	2.2e-29	N/A	unknown function
UniRef90	UHGV-2157670_25	UniRef90_A0A173W6W0	187.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-2157670_25	742740.HMPREF9474_03496	121.0	4.27e-33	YopX protein	N/A
Pfam	UHGV-2157670_25	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-2157670_25	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-2157670_25	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-2157670_26	UniRef90_R7BIL7	83.6	5.76e-18	Putative DNA topoisomerase I	N/A
eggNOG-mapper	UHGV-2157670_26	397290.C810_01514	55.8	0.0000000475	N/A	N/A
eggNOG-mapper	UHGV-2157670_27	397290.C810_01505	138.0	1.79002e-41	N/A	N/A
PHROG	UHGV-2157670_28	phrog_424	97.5	1.2e-28	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2157670_28	UniRef90_A0A2H4JC51	572.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-2157670_28	411461.DORFOR_01142	580.0	0	N/A	N/A
COG	UHGV-2157670_28	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-2157670_28	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-2157670_29	K00571	95.7	5.1e-28	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-2157670_29	phrog_16	230.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2157670_29	UniRef90_A0A173S745	1566.0	0	Putative methyltransferase	N/A
eggNOG-mapper	UHGV-2157670_29	1298920.KI911353_gene2709	1374.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-2157670_29	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-2157670_29	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-2157670_29	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-2157670_29	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-2157670_31	K00558	231.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2157670_31	phrog_116	270.6	0	DNA methyltransferase	other
UniRef90	UHGV-2157670_31	UniRef90_A0A174GZ53	944.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-2157670_31	1235800.C819_02255	712.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-2157670_31	MTase_II_00020	116.8	1.9e-38	Type II methyltransferase	RM
Pfam	UHGV-2157670_31	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-2157670_31	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-2157670_31	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_32	phrog_478	121.2	4.6e-36	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-2157670_32	UniRef90_A0A373Q857	117.0	7.9e-31	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-2157670_32	1111121.HMPREF1247_0834	95.5	1.7e-23	N/A	N/A
KOfam	UHGV-2157670_36	K07474	97.0	3.7e-28	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-2157670_36	phrog_2606	293.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-2157670_36	UniRef90_UPI0015702ED4	340.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-2157670_36	1304866.K413DRAFT_3033	197.0	0	terminase, small subunit	N/A
Pfam	UHGV-2157670_36	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-2157670_36	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-2157670_36	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-2157670_36	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-2157670_37	K06909	113.4	2.4e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2157670_37	phrog_2	147.1	1.79366e-43	terminase large subunit	head and packaging
UniRef90	UHGV-2157670_37	UniRef90_A0A350VVC2	665.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2157670_37	1120998.AUFC01000030_gene2231	362.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2157670_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-2157670_37	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2157670_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2157670_37	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_38	phrog_533	246.3	0	portal protein	head and packaging
UniRef90	UHGV-2157670_38	UniRef90_A0A3E3HWH0	586.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2157670_38	645991.Sgly_0336	139.0	1.02e-33	N/A	N/A
structural_annotation	UHGV-2157670_38	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_39	phrog_581	253.2	0	minor head protein	head and packaging
UniRef90	UHGV-2157670_39	UniRef90_UPI00164C8416	313.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-2157670_39	903814.ELI_3213	162.0	1.17e-40	Phage minor capsid protein 2	N/A
Pfam	UHGV-2157670_39	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2157670_39	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2157670_39	PF06152,PF15542,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_42	phrog_194	83.8	2.4e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-2157670_42	UniRef90_A0A173RNU4	233.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-2157670_42	742765.HMPREF9457_02126	125.0	1.06e-33	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-2157670_42	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2157670_42	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_43	phrog_422	186.9	0	major head protein	head and packaging
UniRef90	UHGV-2157670_43	UniRef90_A0A345MKD0	235.0	0	Main capsid protein	N/A
eggNOG-mapper	UHGV-2157670_43	471855.Shel_14060	240.0	0	N/A	N/A
structural_annotation	UHGV-2157670_43	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_45	phrog_541	67.5	1.9e-19	head-tail adaptor	connector
PHROG	UHGV-2157670_46	phrog_3366	97.6	1.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-2157670_46	645991.Sgly_0343	58.9	0.00000000334	N/A	N/A
structural_annotation	UHGV-2157670_46	PF20536,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_47	phrog_3266	99.4	2.5e-29	tail completion	connector
eggNOG-mapper	UHGV-2157670_47	1151292.QEW_4531	53.9	0.000000361	N/A	N/A
structural_annotation	UHGV-2157670_47	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_48	phrog_3099	65.3	1.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-2157670_48	33035.JPJF01000106_gene3126	94.4	8.25e-23	N/A	N/A
structural_annotation	UHGV-2157670_48	PF08813,TIGR02126,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_49	phrog_11299	75.0	1.2e-21	N/A	unknown function
structural_annotation	UHGV-2157670_49	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_50	phrog_706	122.9	2.5e-36	N/A	unknown function
UniRef90	UHGV-2157670_50	UniRef90_A0A1I0K8S4	174.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-2157670_50	411902.CLOBOL_00127	167.0	0	N/A	N/A
Pfam	UHGV-2157670_50	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2157670_50	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_51	phrog_1535	230.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2157670_51	469596.HMPREF9488_01316	92.4	3.95e-16	N/A	N/A
PHROG	UHGV-2157670_52	phrog_1194	78.3	8e-23	N/A	unknown function
eggNOG-mapper	UHGV-2157670_52	1232453.BAIF02000058_gene1638	75.1	7.14e-16	N/A	N/A
structural_annotation	UHGV-2157670_52	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2157670_53	1232453.BAIF02000058_gene1640	60.5	0.000000000248	N/A	N/A
structural_annotation	UHGV-2157670_53	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_54	phrog_6616	118.5	4.9e-35	tail protein	tail
eggNOG-mapper	UHGV-2157670_54	1294142.CINTURNW_1706	134.0	5.83e-29	Phage minor structural protein	N/A
Pfam	UHGV-2157670_54	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-2157670_54	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-2157670_56	phrog_199	72.5	4.9e-21	holin	lysis
UniRef90	UHGV-2157670_56	UniRef90_A0A2H4JCP5	166.0	0	Putative lysis protein	N/A
eggNOG-mapper	UHGV-2157670_56	1235800.C819_02219	158.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-2157670_56	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2157670_56	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2157670_56	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2157670_56	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-2157670_57	phrog_2649	47.4	0.000000000000021	endolysin	lysis
UniRef90	UHGV-2157670_57	UniRef90_R6C8U0	255.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2157670_57	742733.HMPREF9469_02856	101.0	2.74e-23	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	N/A
Pfam	UHGV-2157670_57	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-2157670_57	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A