UHGV-2160117 (vOTU-170534)

Viral Genome: UHGV-2160117

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2160117
vOTU ID	vOTU-170534
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029771\|Ga0243801_100957
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.22 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.07
Jumbo phage	No

Genome content
Genome length (bp)	33,147
GC content	46.95%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	92%
Average CDS length (bps)	585.12
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 77.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-2160117_1	UniRef90_A0A5Q2MYI7	74.3	1.51e-16	Hydrolase	N/A
eggNOG-mapper	UHGV-2160117_1	397287.C807_03618	94.7	3.79e-24	N/A	N/A
KOfam	UHGV-2160117_2	K14059	172.2	0	int; integrase	N/A
PHROG	UHGV-2160117_2	phrog_1	164.3	0	integrase	integration and excision
UniRef90	UHGV-2160117_2	UniRef90_A0A396QHT0	462.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-2160117_2	1304866.K413DRAFT_1180	431.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2160117_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2160117_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2160117_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2160117_2	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_3	phrog_8545	41.6	0.000000000021	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2160117_3	UniRef90_A0A0V8QJ55	120.0	4.67e-30	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2160117_3	796945.HMPREF1145_0173	116.0	1.37e-29	tRNA_anti-like	N/A
Pfam	UHGV-2160117_3	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-2160117_3	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
KOfam	UHGV-2160117_5	K18830	47.7	0.00000000000015	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-2160117_5	phrog_8	43.5	0.0000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-2160117_5	UniRef90_A0A2T3F856	151.0	4.2039e-45	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2160117_5	903814.ELI_3237	115.0	1.46e-31	sequence-specific DNA binding	N/A
Pfam	UHGV-2160117_5	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-2160117_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2160117_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_12	phrog_253	124.0	9.9e-37	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2160117_12	UniRef90_A0A7G9G713	106.0	3.13e-26	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-2160117_12	397290.C810_05162	159.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-2160117_12	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-2160117_12	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_13	phrog_14970	260.8	0	N/A	unknown function
eggNOG-mapper	UHGV-2160117_13	411470.RUMGNA_02193	223.0	0	double-strand break repair protein	N/A
COG	UHGV-2160117_13	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-2160117_13	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_14	phrog_398	208.6	0	N/A	unknown function
UniRef90	UHGV-2160117_14	UniRef90_UPI001E5E0390	301.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-2160117_14	33035.JPJF01000122_gene2462	301.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-2160117_14	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-2160117_14	PF16784	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2160117_15	PF21715	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_16	phrog_5810	84.3	1.8e-24	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2160117_16	742740.HMPREF9474_03117	176.0	0	N/A	N/A
structural_annotation	UHGV-2160117_16	PF01978,MF_01819,NF041413,COG0735	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2160117_18	PF04936	N/A	N/A	N/A	N/A
KOfam	UHGV-2160117_20	K00558	177.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2160117_20	phrog_116	187.5	0	DNA methyltransferase	other
UniRef90	UHGV-2160117_20	UniRef90_UPI0018994F9F	296.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-2160117_20	1391647.AVSV01000003_gene1798	197.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-2160117_20	MTase_II_00058	232.9	0	Type II methyltransferase	RM
Pfam	UHGV-2160117_20	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-2160117_20	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-2160117_20	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-2160117_21	phrog_16427	66.2	6.7e-19	DNA methyltransferase	other
UniRef90	UHGV-2160117_21	UniRef90_A0A843HSL5	79.0	6.43e-18	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-2160117_21	1121871.AUAT01000002_gene1371	79.7	6.58e-17	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-2160117_21	oMTase_00023	62.1	1.5e-17	orphan methyltransferase	RM
Pfam	UHGV-2160117_21	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-2160117_21	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-2160117_23	phrog_424	97.6	1.3e-28	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2160117_23	UniRef90_A0A2H4JC51	563.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-2160117_23	411461.DORFOR_01142	593.0	0	N/A	N/A
COG	UHGV-2160117_23	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-2160117_23	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2160117_24	PF02452,NF010262,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_25	phrog_986	115.5	2.9e-34	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2160117_25	UniRef90_UPI0011058898	116.0	1.88e-32	N/A	N/A
eggNOG-mapper	UHGV-2160117_25	1458856.A0A059T699_9CAUD	84.3	1.72e-20	N/A	N/A
Pfam	UHGV-2160117_25	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-2160117_25	PF12961	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_26	phrog_36	55.0	0.0000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-2160117_26	UniRef90_A0A7G5MSQ2	180.0	0	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-2160117_26	1235798.C817_03486	171.0	0	N/A	N/A
structural_annotation	UHGV-2160117_26	PF02996	N/A	N/A	N/A	N/A
UniRef90	UHGV-2160117_27	UniRef90_A0A1C5S2Z1	167.0	0	C2H2-type domain-containing protein	N/A
PHROG	UHGV-2160117_28	phrog_8680	235.8	0	N/A	unknown function
UniRef90	UHGV-2160117_28	UniRef90_UPI0015711ED3	311.0	0	N/A	N/A
eggNOG-mapper	UHGV-2160117_28	411470.RUMGNA_02208	306.0	0	N/A	N/A
Pfam	UHGV-2160117_28	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-2160117_28	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_31	phrog_606	107.8	8.4e-32	terminase small subunit	head and packaging
UniRef90	UHGV-2160117_31	UniRef90_UPI00195648BB	175.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-2160117_31	397290.C810_05185	179.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-2160117_31	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
KOfam	UHGV-2160117_32	K06909	129.5	3.4e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2160117_32	phrog_10250	227.8	0	N/A	unknown function
UniRef90	UHGV-2160117_32	UniRef90_A0A1C5ZPZ9	907.0	0	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	N/A
eggNOG-mapper	UHGV-2160117_32	903814.ELI_3215	650.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-2160117_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-2160117_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2160117_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2160117_32	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_33	phrog_64	393.3	0	portal protein	head and packaging
UniRef90	UHGV-2160117_33	UniRef90_A0A1C5ZPW9	890.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-2160117_33	742733.HMPREF9469_01826	682.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-2160117_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-2160117_33	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-2160117_33	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_34	phrog_2841	353.4	0	minor head protein	head and packaging
UniRef90	UHGV-2160117_34	UniRef90_A0A1C5ZQ59	1005.0	0	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-2160117_34	742733.HMPREF9469_01825	397.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-2160117_34	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-2160117_34	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-2160117_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2160117_34	PF15542,PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2160117_35	411460.RUMTOR_01296	69.3	0.00000000000000314	N/A	N/A
PHROG	UHGV-2160117_36	phrog_918	128.1	1.9e-38	N/A	unknown function
UniRef90	UHGV-2160117_36	UniRef90_UPI00115A7D93	130.0	5.79e-38	N/A	N/A
eggNOG-mapper	UHGV-2160117_36	1499683.CCFF01000014_gene3910	126.0	6.19e-37	N/A	N/A
Pfam	UHGV-2160117_36	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-2160117_36	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_37	phrog_355	58.5	9.5e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2160117_37	UniRef90_A0A396KGT7	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-2160117_37	97138.C820_00250	130.0	6.56e-38	N/A	N/A
Pfam	UHGV-2160117_37	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-2160117_37	PF14359,COG3613	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2160117_38	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_39	phrog_172	157.5	0	head scaffolding protein	head and packaging
UniRef90	UHGV-2160117_39	UniRef90_UPI001571586D	215.0	0	N/A	N/A
eggNOG-mapper	UHGV-2160117_39	742733.HMPREF9469_01824	223.0	0	N/A	N/A
Pfam	UHGV-2160117_39	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-2160117_39	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_40	phrog_422	305.5	0	major head protein	head and packaging
UniRef90	UHGV-2160117_40	UniRef90_A0A2H4JCM6	514.0	0	Putative capsid protein	N/A
eggNOG-mapper	UHGV-2160117_40	742733.HMPREF9469_01823	540.0	0	N/A	N/A
structural_annotation	UHGV-2160117_40	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_41	phrog_2724	55.6	9.9e-16	N/A	unknown function
UniRef90	UHGV-2160117_41	UniRef90_A0A1C5ZQR6	146.0	1.82169e-44	Rho termination factor, N-terminal domain	N/A
Pfam	UHGV-2160117_41	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
structural_annotation	UHGV-2160117_41	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_42	phrog_132	75.7	4.6e-22	head-tail adaptor	connector
UniRef90	UHGV-2160117_42	UniRef90_A0A1C5ZQS8	210.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-2160117_42	742733.HMPREF9469_01821	145.0	7.9874e-44	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-2160117_42	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-2160117_42	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_43	phrog_2168	87.5	7.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-2160117_43	742733.HMPREF9469_01820	145.0	3.19496e-43	N/A	N/A
structural_annotation	UHGV-2160117_43	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_44	phrog_5	69.2	8e-20	tail completion or Neck1 protein	connector
UniRef90	UHGV-2160117_44	UniRef90_A0A1C5S5J2	378.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-2160117_44	1211844.CBLM010000016_gene1487	146.0	5.01945e-42	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-2160117_44	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-2160117_44	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-2160117_44	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_45	phrog_78	52.7	0.0000000000000077	tail terminator	connector
eggNOG-mapper	UHGV-2160117_45	1235800.C819_00480	153.0	0	N/A	N/A
structural_annotation	UHGV-2160117_45	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_46	phrog_158	69.3	7.5e-20	major tail protein	tail
UniRef90	UHGV-2160117_46	UniRef90_A0A1C5ZQW7	272.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2160117_46	1235800.C819_00479	173.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-2160117_46	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-2160117_46	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_47	phrog_183	57.1	2.6e-16	tail chaperone protein	tail
UniRef90	UHGV-2160117_47	UniRef90_UPI0015932736	117.0	7.24e-31	N/A	N/A
eggNOG-mapper	UHGV-2160117_47	1235800.C819_00478	139.0	6.78e-40	N/A	N/A
Pfam	UHGV-2160117_47	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-2160117_47	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_48	phrog_2066	50.2	0.000000000000028	N/A	unknown function
eggNOG-mapper	UHGV-2160117_48	1235800.C819_00477	63.9	0.0000000000386	N/A	N/A
KOfam	UHGV-2160117_49	K03529	45.9	0.00000000000024	smc; chromosome segregation protein	N/A
PHROG	UHGV-2160117_49	phrog_1535	281.1	0	tail length tape measure protein	tail
UniRef90	UHGV-2160117_49	UniRef90_A0A1C5ZQF8	1766.0	0	ATPase involved in DNA repair	N/A
eggNOG-mapper	UHGV-2160117_49	1449343.JQLQ01000002_gene1511	117.0	2.1e-23	SLT domain	N/A
COG	UHGV-2160117_49	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-2160117_50	phrog_1194	74.3	1.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-2160117_50	742740.HMPREF9474_03515	132.0	4.3e-38	N/A	N/A
structural_annotation	UHGV-2160117_50	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_51	phrog_13879	307.5	0	N/A	unknown function
eggNOG-mapper	UHGV-2160117_51	1304866.K413DRAFT_0774	578.0	0	N/A	N/A
structural_annotation	UHGV-2160117_51	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-2160117_52	phrog_18725	50.5	0.000000000000036	N/A	unknown function
eggNOG-mapper	UHGV-2160117_52	585501.HMPREF6123_0822	94.0	8.29e-23	N/A	N/A