UHGV-2160596 (vOTU-042137)

Viral Genome: UHGV-2160596

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2160596
vOTU ID	vOTU-042137
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029726\|Ga0245201_100659
Associated BioSample	SAMEA3449253
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.91 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9748
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.88
Jumbo phage	No

Genome content
Genome length (bp)	27,139
GC content	48.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	35
CDS density	88%
Average CDS length (bps)	682.20
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 79.91)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2160596_2	phrog_836	53.2	0.0000000000000053	late transcriptional activator	transcription regulation
UniRef90	UHGV-2160596_2	UniRef90_G9RTS9	230.0	0	Mor domain-containing protein	N/A
eggNOG-mapper	UHGV-2160596_2	665956.HMPREF1032_02963	230.0	0	Mor transcription activator family	N/A
Pfam	UHGV-2160596_2	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-2160596_2	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-2160596_2	PF08765,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_3	phrog_286	71.9	9.2e-21	N/A	unknown function
UniRef90	UHGV-2160596_3	UniRef90_A0A372V3L1	289.0	0	Regulatory protein GemA	N/A
eggNOG-mapper	UHGV-2160596_3	665956.HMPREF1032_02964	343.0	0	N/A	N/A
Pfam	UHGV-2160596_3	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-2160596_3	PF06252	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_4	phrog_491	102.6	3.4e-30	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2160596_4	UniRef90_A0A6N3F7T2	271.0	0	Bacteriophage Mu Gam like protein	N/A
eggNOG-mapper	UHGV-2160596_4	665956.HMPREF1032_02965	310.0	0	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-2160596_4	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
COG	UHGV-2160596_4	COG4396	N/A	N/A	Mu-like prophage host-nuclease inhibitor protein Gam	N/A
structural_annotation	UHGV-2160596_4	PF07352,COG4396	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_6	phrog_5671	82.0	6.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-2160596_6	445972.ANACOL_00522	109.0	4.73e-29	N/A	N/A
UniRef90	UHGV-2160596_8	UniRef90_UPI001967CCF1	232.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-2160596_8	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
structural_annotation	UHGV-2160596_8	PF04218,NF040595,COG1710	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_9	phrog_2717	50.5	0.000000000000031	N/A	unknown function
eggNOG-mapper	UHGV-2160596_9	665956.HMPREF1032_02973	241.0	0	N/A	N/A
KOfam	UHGV-2160596_11	K07132	68.0	1.3e-19	MuB; ATP-dependent target DNA activator	N/A
PHROG	UHGV-2160596_11	phrog_296	124.8	7.9e-37	DNA transposition protein	integration and excision
UniRef90	UHGV-2160596_11	UniRef90_G9RTU4	593.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2160596_11	665956.HMPREF1032_02978	593.0	0	AAA domain	N/A
Pfam	UHGV-2160596_11	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-2160596_11	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
PHROG	UHGV-2160596_12	phrog_310	326.8	0	transposase	integration and excision
UniRef90	UHGV-2160596_12	UniRef90_D1PRI1	559.0	0	Mu transposase domain protein	N/A
eggNOG-mapper	UHGV-2160596_12	665956.HMPREF1032_02979	1189.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-2160596_12	TnsB_0_V-K	49.3	0.000000000000062	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-2160596_12	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-2160596_12	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-2160596_12	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-2160596_16	UniRef90_A0A3A6JY84	133.0	2.83e-39	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2160596_16	445972.ANACOL_00136	63.2	0.00000000000252	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2160596_16	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-2160596_16	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-2160596_17	K01356	91.4	2.2e-27	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-2160596_17	phrog_4	123.0	2.1e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-2160596_17	UniRef90_A0A3A6KHS9	484.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2160596_17	665956.HMPREF1032_04076	365.0	0	Peptidase S24-like	N/A
Pfam	UHGV-2160596_17	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
Pfam	UHGV-2160596_17	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-2160596_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2160596_17	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_18	phrog_36	61.7	1.4e-17	transcriptional regulator	transcription regulation
structural_annotation	UHGV-2160596_18	PF07374,TIGR01637	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_19	phrog_361	67.9	1.6e-19	terminase small subunit	head and packaging
UniRef90	UHGV-2160596_19	UniRef90_A0A1C6H6I9	197.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-2160596_19	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-2160596_19	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-2160596_19	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_20	phrog_9	286.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-2160596_20	UniRef90_A0A0D8IV16	1183.0	0	Terminase	N/A
eggNOG-mapper	UHGV-2160596_20	1226322.HMPREF1545_00113	896.0	0	Phage Terminase	N/A
Pfam	UHGV-2160596_20	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2160596_20	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2160596_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2160596_20	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_21	phrog_12	196.2	0	portal protein	head and packaging
UniRef90	UHGV-2160596_21	UniRef90_A0A0D8IVL0	806.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2160596_21	1226322.HMPREF1545_00114	535.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-2160596_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-2160596_21	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-2160596_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2160596_21	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2160596_22	K06904	148.7	4.76441e-44	N/A	N/A
PHROG	UHGV-2160596_22	phrog_80	168.7	0	head maturation protease	head and packaging
UniRef90	UHGV-2160596_22	UniRef90_A0A0D8IYC2	385.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-2160596_22	1226322.HMPREF1545_00115	253.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-2160596_22	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-2160596_22	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-2160596_22	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-2160596_22	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_23	phrog_10	200.3	0	major head protein	head and packaging
UniRef90	UHGV-2160596_23	UniRef90_UPI000679B959	1065.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-2160596_23	1226322.HMPREF1545_00116	642.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-2160596_23	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2160596_23	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2160596_23	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2160596_23	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_24	phrog_2550	51.1	0.000000000000016	N/A	unknown function
UniRef90	UHGV-2160596_24	UniRef90_UPI0008717716	65.5	0.00000000000364	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-2160596_24	1226322.HMPREF1545_00117	69.7	0.0000000000000135	N/A	N/A
PHROG	UHGV-2160596_25	phrog_19734	57.0	3.2e-16	N/A	unknown function
UniRef90	UHGV-2160596_25	UniRef90_A0A316NL63	112.0	1.01e-29	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-2160596_25	1232446.BAIE02000002_gene828	55.8	0.0000000207	N/A	N/A
structural_annotation	UHGV-2160596_25	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_26	phrog_78	46.3	0.00000000000081	tail terminator	connector
eggNOG-mapper	UHGV-2160596_26	1232446.BAIE02000002_gene829	101.0	1.28e-26	N/A	N/A
structural_annotation	UHGV-2160596_26	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_27	phrog_5	48.1	0.00000000000026	tail completion or Neck1 protein	connector
UniRef90	UHGV-2160596_27	UniRef90_A0A1C6FG30	158.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-2160596_27	908340.HMPREF9406_2573	122.0	4.34e-33	N/A	N/A
NCBIFam	UHGV-2160596_27	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-2160596_27	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_28	phrog_88	100.3	1.7e-29	major tail protein	tail
UniRef90	UHGV-2160596_28	UniRef90_G9YSC5	127.0	1.56e-33	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-2160596_28	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-2160596_28	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2160596_28	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_30	phrog_1272	110.9	0	tail length tape measure protein	tail
UniRef90	UHGV-2160596_30	UniRef90_A0A1Y4R6K5	300.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-2160596_30	1140001.I571_01843	189.0	0	phage tail tape measure protein	N/A
COG	UHGV-2160596_30	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2160596_30	PF20155,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_31	phrog_33	57.3	4e-16	distal tail protein Dit	tail
UniRef90	UHGV-2160596_31	UniRef90_A0A1C6H6D2	187.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2160596_31	1032362.F6K8S1_9CAUD	110.0	8.29e-27	Phage tail protein	N/A
structural_annotation	UHGV-2160596_31	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_32	phrog_1067	374.4	0	minor head protein	head and packaging
UniRef90	UHGV-2160596_32	UniRef90_UPI001968120D	935.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-2160596_32	1123263.AUKY01000068_gene489	406.0	0	Phage minor structural protein	N/A
Pfam	UHGV-2160596_32	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2160596_32	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2160596_32	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2160596_32	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2160596_33	phrog_16573	59.8	3.1e-17	N/A	unknown function
UniRef90	UHGV-2160596_33	UniRef90_A0A3A6E2U3	364.0	0	N/A	N/A
eggNOG-mapper	UHGV-2160596_33	1160721.RBI_I01572	76.3	0.000000000000181	N/A	N/A
Pfam	UHGV-2160596_33	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-2160596_34	phrog_13564	52.7	0.0000000000000034	minor tail protein	tail
eggNOG-mapper	UHGV-2160596_34	665956.HMPREF1032_03918	56.2	0.00000393	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A