UHGV-2168038 (vOTU-019165)

Viral Genome: UHGV-2168038

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2168038
vOTU ID	vOTU-019165
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029874\|Ga0245322_100532\|provirus_3_36888
Associated BioSample	SAMEA3449372
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.73 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9719
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.04
Jumbo phage	No

Genome content
Genome length (bp)	36,886
GC content	38.76%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	91%
Average CDS length (bps)	636.74
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 85.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2168038_1	phrog_6616	123.2	9.2e-37	tail protein	tail
eggNOG-mapper	UHGV-2168038_1	1121333.JMLH01000047_gene1007	385.0	0	N/A	N/A
structural_annotation	UHGV-2168038_1	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-2168038_2	phrog_1194	91.4	7.4e-27	N/A	unknown function
UniRef90	UHGV-2168038_2	UniRef90_G0IA27	82.8	4.33e-18	N/A	N/A
eggNOG-mapper	UHGV-2168038_2	1294142.CINTURNW_1701	102.0	1.98e-26	N/A	N/A
Pfam	UHGV-2168038_2	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-2168038_2	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2168038_3	phrog_1535	237.3	0	tail length tape measure protein	tail
UniRef90	UHGV-2168038_3	UniRef90_A8RD17	237.0	0	Cation diffusion facilitator family transporter	N/A
eggNOG-mapper	UHGV-2168038_3	428127.EUBDOL_01563	237.0	0	homoserine transmembrane transporter activity	N/A
COG	UHGV-2168038_3	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-2168038_4	1121333.JMLH01000047_gene1011	98.6	5.27e-25	N/A	N/A
Pfam	UHGV-2168038_5	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-2168038_5	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-2168038_6	phrog_158	42.5	0.000000000012	major tail protein	tail
eggNOG-mapper	UHGV-2168038_6	469596.HMPREF9488_01310	223.0	0	N/A	N/A
structural_annotation	UHGV-2168038_6	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2168038_7	1121333.JMLH01000047_gene1014	66.2	0.00000000000558	N/A	N/A
structural_annotation	UHGV-2168038_7	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-2168038_8	UniRef90_UPI001BBD4500	121.0	5.94e-32	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2168038_8	397290.C810_01411	71.2	0.000000000000329	N/A	N/A
structural_annotation	UHGV-2168038_8	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2168038_9	1232453.BAIF02000058_gene1630	62.0	0.000000000117	N/A	N/A
UniRef90	UHGV-2168038_10	UniRef90_A0A7C7ERG0	109.0	7.79e-29	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-2168038_10	1298920.KI911353_gene2658	49.7	0.00000311	N/A	N/A
structural_annotation	UHGV-2168038_10	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2168038_12	428127.EUBDOL_01555	265.0	0	N/A	N/A
structural_annotation	UHGV-2168038_12	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2168038_14	phrog_64	190.9	0	portal protein	head and packaging
UniRef90	UHGV-2168038_14	UniRef90_A0A3E3AE79	426.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2168038_14	1232453.BAIF02000058_gene1625	243.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-2168038_14	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2168038_14	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2168038_15	COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-2168038_16	phrog_38	212.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-2168038_16	UniRef90_A0A318EQM2	460.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-2168038_16	1123263.AUKY01000015_gene1608	502.0	0	chromosome segregation	N/A
Pfam	UHGV-2168038_16	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-2168038_16	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-2168038_16	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2168038_16	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-2168038_17	K14060	118.8	6.1e-35	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-2168038_17	phrog_125	151.1	7.00649e-45	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2168038_17	UniRef90_A0A3E3AEZ4	209.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-2168038_17	641107.CDLVIII_2031	159.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-2168038_17	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-2168038_17	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2168038_17	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2168038_18	PF12844,TIGR02612,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-2168038_19	UniRef90_UPI0018AB0909	59.7	0.000000000534	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-2168038_19	PF12844,TIGR02612,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2168038_20	phrog_16683	114.1	1.2e-33	N/A	unknown function
UniRef90	UHGV-2168038_20	UniRef90_UPI001F427C1D	116.0	4.21e-25	amidoligase family protein	N/A
eggNOG-mapper	UHGV-2168038_20	411473.RUMCAL_01474	114.0	7.9e-26	N/A	N/A
structural_annotation	UHGV-2168038_20	PF12224,MF_02111,NF010044,COG2170	N/A	N/A	N/A	N/A
UniRef90	UHGV-2168038_21	UniRef90_A0A1C6GC44	157.0	1.10983e-42	Glutamine amidotransferases class-II	N/A
eggNOG-mapper	UHGV-2168038_21	1401067.HMPREF0872_03875	120.0	2.03e-29	N/A	N/A
structural_annotation	UHGV-2168038_21	MF_01931,TIGR01134,COG0034	N/A	N/A	N/A	N/A
PHROG	UHGV-2168038_22	phrog_606	42.0	0.000000000013	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-2168038_22	931276.Cspa_c57180	51.2	0.00000571	DNA-packaging protein gp3	N/A
Pfam	UHGV-2168038_22	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
KOfam	UHGV-2168038_23	K02316	86.0	4.8e-25	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-2168038_23	phrog_864	203.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2168038_23	UniRef90_UPI001C2539AF	510.0	0	N/A	N/A
eggNOG-mapper	UHGV-2168038_23	1219626.HMPREF1639_07360	108.0	2.14e-21	D5 N terminal like	N/A
Pfam	UHGV-2168038_23	PF13155	N/A	N/A	Toprim-like	Toprim_2
Pfam	UHGV-2168038_23	PF19263	N/A	N/A	N/A	DUF5906
NCBIFam	UHGV-2168038_23	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-2168038_23	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-2168038_23	PF04735,MF_00974,MF_04000,NF005477,COG3378,COG0358	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2168038_25	PF15959	N/A	N/A	N/A	N/A
PHROG	UHGV-2168038_30	phrog_111	82.5	5.2e-24	DNA methyltransferase	other
UniRef90	UHGV-2168038_30	UniRef90_A0A1Y4EVK6	129.0	6.89e-37	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-2168038_30	1567011.A0A0A7RUD1_9VIRU	125.0	2.94e-36	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-2168038_30	oMTase_00015	128.7	5.3e-38	orphan methyltransferase	RM
Pfam	UHGV-2168038_30	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-2168038_30	PF05869,TIGR01712,COG2242	N/A	N/A	N/A	N/A
KOfam	UHGV-2168038_31	K00558	51.3	0.000000000000011	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2168038_31	phrog_16427	121.7	5.3e-36	DNA methyltransferase	other
UniRef90	UHGV-2168038_31	UniRef90_A0A373VYY6	149.0	5.32493e-43	DNA (cytosine-5-)-methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-2168038_31	482234.SCAZ3_10455	150.0	3.81994e-41	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-2168038_31	oMTase_00023	67.9	1.8e-23	orphan methyltransferase	RM
Pfam	UHGV-2168038_31	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-2168038_31	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-2168038_33	K00558	162.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2168038_33	phrog_116	167.9	0	DNA methyltransferase	other
UniRef90	UHGV-2168038_33	UniRef90_G9WTJ8	326.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-2168038_33	1408415.JHXL01000003_gene1146	239.0	0	COG0270 Site-specific DNA methylase	N/A
PADLOC	UHGV-2168038_33	MTase_II_00058	181.8	0	Type II methyltransferase	RM
Pfam	UHGV-2168038_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-2168038_33	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-2168038_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-2168038_34	K07171	82.1	1.1e-23	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-2168038_34	phrog_1936	124.1	9.3e-37	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2168038_34	UniRef90_A0A1C5MWG4	138.0	8.56e-39	mRNA interferase MazF4	N/A
eggNOG-mapper	UHGV-2168038_34	411461.DORFOR_01157	115.0	9.03e-30	N/A	N/A
Pfam	UHGV-2168038_34	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-2168038_34	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-2168038_34	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-2168038_37	phrog_22292	103.4	1.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-2168038_37	1232446.BAIE02000041_gene2433	78.2	3.02e-16	N/A	N/A
eggNOG-mapper	UHGV-2168038_38	1336234.JAGN01000004_gene538	50.8	0.00000224	N/A	N/A
PHROG	UHGV-2168038_40	phrog_4019	119.9	8.7e-36	N/A	unknown function
UniRef90	UHGV-2168038_40	UniRef90_F9PY75	91.3	1.59e-21	Conserved domain protein	N/A
PHROG	UHGV-2168038_41	phrog_4856	70.6	2.3e-20	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-2168038_41	UniRef90_E2NR83	165.0	0	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-2168038_41	1680.BADO_1259	50.1	0.00000212	N/A	N/A
Pfam	UHGV-2168038_41	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
structural_annotation	UHGV-2168038_41	MF_01019,NF002747,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-2168038_42	phrog_6721	276.5	0	N/A	unknown function
eggNOG-mapper	UHGV-2168038_42	428125.CLOLEP_01387	252.0	0	N/A	N/A
structural_annotation	UHGV-2168038_42	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-2168038_44	phrog_236	101.2	2e-29	nucleotide kinase	other
UniRef90	UHGV-2168038_44	UniRef90_A0A8D9PGN7	134.0	8.49e-39	Nucelotide kinase	N/A
eggNOG-mapper	UHGV-2168038_44	1123263.AUKY01000015_gene1590	89.7	1.2e-22	N/A	N/A
Pfam	UHGV-2168038_44	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-2168038_44	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-2168038_45	phrog_93	45.1	0.0000000000012	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2168038_45	UniRef90_A0A3E3AEG4	92.8	3.2e-22	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-2168038_45	90410.Q9XJD1_9CAUD	53.9	0.0000000876	hydrolase activity, acting on ester bonds	N/A
Pfam	UHGV-2168038_45	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-2168038_46	K19789	257.1	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-2168038_46	phrog_16	222.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2168038_46	UniRef90_A0A374HMN2	328.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-2168038_46	1410670.JHXF01000015_gene2270	303.0	0	helicase	N/A
PADLOC	UHGV-2168038_46	mREase_IV_00005	101.3	9.1e-30	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2168038_46	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2168038_46	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2168038_46	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2168038_46	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2168038_47	1539298.JO41_12690	57.8	0.0000000474	N/A	N/A
Pfam	UHGV-2168038_47	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-2168038_47	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-2168038_48	phrog_124	138.2	5.60001e-41	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2168038_48	UniRef90_UPI001071CD7C	202.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-2168038_48	1227360.C176_12573	196.0	0	AAA domain	N/A
Pfam	UHGV-2168038_48	PF13479	N/A	N/A	AAA domain	AAA_24
NCBIFam	UHGV-2168038_48	TIGR01618.1	N/A	N/A	phage nucleotide-binding protein	N/A
structural_annotation	UHGV-2168038_48	PF13479,MF_00350,TIGR01618,COG1066	N/A	N/A	N/A	N/A
PHROG	UHGV-2168038_49	phrog_69	54.2	0.0000000000000027	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2168038_49	UniRef90_A0A645E2H1	178.0	0	PDDEXK_1 domain-containing protein	N/A
Pfam	UHGV-2168038_49	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
COG	UHGV-2168038_49	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-2168038_49	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
UniRef90	UHGV-2168038_50	UniRef90_A0A417IKZ6	90.9	3.17e-22	DNA-binding protein	N/A
structural_annotation	UHGV-2168038_50	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-2168038_52	UniRef90_A0A3C1N2P3	68.9	0.000000000000227	HTH cro/C1-type domain-containing protein	N/A
KOfam	UHGV-2168038_53	K14059	95.1	1.2e-27	int; integrase	N/A
PHROG	UHGV-2168038_53	phrog_1	120.1	2.3e-35	integrase	integration and excision
UniRef90	UHGV-2168038_53	UniRef90_UPI001EE781EB	534.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-2168038_53	1504823.CCMM01000008_gene1083	440.0	0	DNA integration	N/A
Pfam	UHGV-2168038_53	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-2168038_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2168038_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2168038_53	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A