UHGV-2168699 (vOTU-040449)

Viral Genome: UHGV-2168699

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2168699
vOTU ID	vOTU-040449
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029828\|Ga0244885_100087\|provirus_1_24942
Associated BioSample	SAMEA3708729
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.5 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9725
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.89
Jumbo phage	No

Genome content
Genome length (bp)	24,942
GC content	46.76%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	91%
Average CDS length (bps)	528.63
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2168699_1	phrog_1533	329.0	0	tail length tape measure protein	tail
UniRef90	UHGV-2168699_1	UniRef90_A0A0G3WGN7	340.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-2168699_1	478749.BRYFOR_07547	306.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-2168699_1	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-2168699_1	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-2168699_1	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-2168699_1	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-2168699_4	phrog_2115	41.1	0.000000000032	tail protein	tail
eggNOG-mapper	UHGV-2168699_4	509191.AEDB02000020_gene3251	54.7	0.000000126	N/A	N/A
structural_annotation	UHGV-2168699_4	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-2168699_6	phrog_88	111.8	5.5e-33	major tail protein	tail
UniRef90	UHGV-2168699_6	UniRef90_G9YSC5	239.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-2168699_6	33035.JPJF01000039_gene278	111.0	5.79e-28	N/A	N/A
NCBIFam	UHGV-2168699_6	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-2168699_6	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-2168699_7	phrog_5	51.0	0.000000000000024	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-2168699_7	908340.HMPREF9406_2573	117.0	2.53e-31	N/A	N/A
NCBIFam	UHGV-2168699_7	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-2168699_7	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2168699_8	999413.HMPREF1094_02005	89.0	1.23e-21	N/A	N/A
structural_annotation	UHGV-2168699_8	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-2168699_9	phrog_19734	109.0	3.2e-32	N/A	unknown function
UniRef90	UHGV-2168699_9	UniRef90_A0A6I7GNS7	125.0	1.49e-34	Phage head closure protein	N/A
eggNOG-mapper	UHGV-2168699_9	349161.Dred_2602	93.2	7.14e-23	N/A	N/A
structural_annotation	UHGV-2168699_9	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2168699_10	phrog_749	76.1	3.5e-22	N/A	unknown function
UniRef90	UHGV-2168699_10	UniRef90_A0A7V7BBS9	77.4	1.99e-16	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-2168699_10	349161.Dred_2603	83.6	1.52e-19	N/A	N/A
PHROG	UHGV-2168699_11	phrog_10	139.6	3.20001e-41	major head protein	head and packaging
UniRef90	UHGV-2168699_11	UniRef90_UPI0018757887	613.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-2168699_11	1235792.C808_00086	481.0	0	Phage capsid family	N/A
Pfam	UHGV-2168699_11	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-2168699_11	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-2168699_11	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2168699_11	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2168699_11	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2168699_12	K01358	140.1	1.99993e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2168699_12	phrog_94	256.0	0	head maturation protease	head and packaging
UniRef90	UHGV-2168699_12	UniRef90_A0A1C6FFN6	358.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2168699_12	349161.Dred_2605	282.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2168699_12	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2168699_12	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2168699_12	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2168699_13	phrog_12	109.1	2.6e-32	portal protein	head and packaging
UniRef90	UHGV-2168699_13	UniRef90_G9YSB8	447.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-2168699_13	349161.Dred_2606	327.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-2168699_13	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2168699_13	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2168699_13	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2168699_14	phrog_9	229.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-2168699_14	UniRef90_UPI0018737C02	852.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-2168699_14	1235792.C808_00083	646.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-2168699_14	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2168699_14	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2168699_14	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2168699_15	phrog_5110	84.1	1e-24	terminase small subunit	head and packaging
UniRef90	UHGV-2168699_15	UniRef90_UPI00195E8788	84.0	1.36e-18	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-2168699_15	1415774.U728_1256	55.5	0.0000000721	N/A	N/A
Pfam	UHGV-2168699_15	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-2168699_15	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2168699_16	phrog_119	81.6	1e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2168699_16	UniRef90_G9YSB5	147.0	1.59748e-43	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-2168699_16	926561.KB900623_gene763	103.0	5.3e-27	HNH nucleases	N/A
Pfam	UHGV-2168699_16	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2168699_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-2168699_18	UniRef90_A0A353J147	87.0	2.93e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2168699_18	1415774.U728_2928	72.0	3.66e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2168699_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2168699_18	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2168699_19	phrog_11237	86.2	3.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-2168699_19	610130.Closa_0738	102.0	5.65e-26	N/A	N/A
eggNOG-mapper	UHGV-2168699_20	411473.RUMCAL_02525	117.0	5.48e-33	N/A	N/A
eggNOG-mapper	UHGV-2168699_21	1235790.C805_00035	58.2	0.00000000624	N/A	N/A
eggNOG-mapper	UHGV-2168699_22	397290.C810_01505	135.0	1.47e-40	N/A	N/A
KOfam	UHGV-2168699_23	K03111	121.0	1.5e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2168699_23	phrog_44	120.8	1.1e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2168699_23	UniRef90_A0A352UR43	289.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2168699_23	97138.C820_02339	170.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-2168699_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2168699_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2168699_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2168699_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2168699_23	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2168699_25	phrog_7566	90.5	1e-26	N/A	unknown function
eggNOG-mapper	UHGV-2168699_25	1280698.AUJS01000007_gene1020	70.1	0.0000000000000943	N/A	N/A
PHROG	UHGV-2168699_26	phrog_3584	168.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2168699_26	UniRef90_I2E8X7	105.0	1.36e-23	Gp31	N/A
eggNOG-mapper	UHGV-2168699_26	318464.IO99_13830	93.6	7.7e-20	N/A	N/A
structural_annotation	UHGV-2168699_26	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-2168699_28	phrog_15609	172.2	0	N/A	unknown function
UniRef90	UHGV-2168699_28	UniRef90_UPI001875FF23	314.0	0	N/A	N/A
eggNOG-mapper	UHGV-2168699_28	1007096.BAGW01000031_gene118	151.0	1.53e-39	N/A	N/A
Pfam	UHGV-2168699_28	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-2168699_28	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-2168699_28	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-2168699_29	phrog_8470	275.1	0	N/A	unknown function
UniRef90	UHGV-2168699_29	UniRef90_UPI001875A728	539.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-2168699_29	1157490.EL26_01845	176.0	2.8026e-45	PcfJ-like protein	N/A
Pfam	UHGV-2168699_29	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-2168699_29	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-2168699_30	phrog_7445	52.3	0.00000000000001	N/A	unknown function
UniRef90	UHGV-2168699_30	UniRef90_UPI000FD875FF	61.2	0.000000000886	Cas9 inhibitor AcrIIA9 family protein	N/A
Pfam	UHGV-2168699_30	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-2168699_30	PF14058	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2168699_32	PF01381,NF041575,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2168699_39	K07729	56.3	7.8e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-2168699_39	phrog_3	40.0	0.00000000014	transcriptional repressor	transcription regulation
UniRef90	UHGV-2168699_39	UniRef90_H1CAF9	91.7	7.94e-23	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2168699_39	706433.HMPREF9430_01294	64.3	0.00000000000093	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2168699_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2168699_39	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2168699_40	K22300	63.8	3.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2168699_40	phrog_8	83.3	3.6e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-2168699_40	UniRef90_A0A1Q6SLN5	94.7	1.88e-22	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2168699_40	553973.CLOHYLEM_07297	85.5	1.58e-19	Transcriptional	N/A
PADLOC	UHGV-2168699_40	retron_type_VI_hth_cluster2_1	49.1	0.0000000000001	N/A	Retron
Pfam	UHGV-2168699_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2168699_40	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-2168699_41	phrog_1914	131.4	6.8e-39	N/A	unknown function
UniRef90	UHGV-2168699_41	UniRef90_A0A3D4VT22	256.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-2168699_41	445971.ANASTE_00176	109.0	2.5e-27	IrrE N-terminal-like domain	N/A
Pfam	UHGV-2168699_41	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2168699_41	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2168699_41	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-2168699_42	K06400	344.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2168699_42	phrog_95	355.8	0	integrase	integration and excision
UniRef90	UHGV-2168699_42	UniRef90_A0A7X8ETH7	405.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-2168699_42	1120998.AUFC01000013_gene2937	350.0	0	N/A	N/A
Pfam	UHGV-2168699_42	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2168699_42	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-2168699_42	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2168699_42	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2168699_42	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-2168699_43	K06334	169.8	0	cotJC; spore coat protein JC	N/A
PHROG	UHGV-2168699_43	phrog_7573	124.8	5.6e-37	N/A	unknown function
UniRef90	UHGV-2168699_43	UniRef90_UPI001C0F924C	197.0	0	manganese catalase family protein	N/A
eggNOG-mapper	UHGV-2168699_43	97138.C820_02770	191.0	0	PFAM Manganese containing catalase	N/A
Pfam	UHGV-2168699_43	PF05067	N/A	N/A	Manganese containing catalase	Mn_catalase
COG	UHGV-2168699_43	COG3546	N/A	N/A	Mn-containing catalase (includes spore coat protein CotJC)	N/A