UHGV-2172737 (vOTU-065266)

Viral Genome: UHGV-2172737

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2172737
vOTU ID	vOTU-065266
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029842\|Ga0245273_100783
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.37
Jumbo phage	No

Genome content
Genome length (bp)	37,272
GC content	58.45%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	92%
Average CDS length (bps)	542.95
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-2172737_1	UniRef90_A0A350U006	81.3	1.18e-18	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-2172737_1	318464.IO99_13775	76.3	2.13e-17	HNH nucleases	N/A
COG	UHGV-2172737_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-2172737_2	1297617.JPJD01000059_gene2640	84.7	3.61e-19	N/A	N/A
structural_annotation	UHGV-2172737_2	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_3	phrog_3584	116.0	3e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2172737_3	537013.CLOSTMETH_02141	75.1	0.0000000000000944	N/A	N/A
structural_annotation	UHGV-2172737_3	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_4	phrog_21498	299.3	0	N/A	unknown function
eggNOG-mapper	UHGV-2172737_4	78346.BRUM_0376	261.0	0	DNA binding	N/A
COG	UHGV-2172737_4	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2172737_4	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_8	phrog_374	58.3	1.7e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2172737_8	375286.mma_2189	68.6	0.00000000000209	N/A	N/A
PHROG	UHGV-2172737_9	phrog_190	96.2	3.6e-28	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2172737_9	UniRef90_UPI0006C2AC63	120.0	6.5e-32	N/A	N/A
eggNOG-mapper	UHGV-2172737_9	693746.OBV_25250	116.0	3.74e-31	N/A	N/A
Pfam	UHGV-2172737_9	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-2172737_9	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_11	phrog_599	41.5	0.000000000022	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2172737_11	UniRef90_R6QWY1	100.0	5.75e-26	28	N/A
Pfam	UHGV-2172737_11	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-2172737_11	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-2172737_12	phrog_38832	59.4	3.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-2172737_12	445972.ANACOL_00165	61.6	0.000000002	N/A	N/A
PHROG	UHGV-2172737_13	phrog_3136	126.7	9e-38	N/A	unknown function
UniRef90	UHGV-2172737_13	UniRef90_A0A6N7TMC2	121.0	2.71e-31	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-2172737_13	693746.OBV_25380	53.9	0.00000358	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-2172737_13	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-2172737_13	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-2172737_15	K00390	105.8	4.7e-31	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-2172737_15	phrog_424	125.5	4.1e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2172737_15	UniRef90_UPI001D087498	425.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-2172737_15	1408437.JNJN01000032_gene2312	332.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-2172737_15	BrxP_00001	72.4	4.1e-21	BrxP	BREX
Pfam	UHGV-2172737_15	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-2172737_15	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-2172737_15	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2172737_19	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2172737_20	NF041247	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_22	phrog_1468	51.7	0.0000000000000066	transcriptional repressor	transcription regulation
UniRef90	UHGV-2172737_22	UniRef90_UPI001D00CEEC	58.5	0.000000000857	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2172737_22	428125.CLOLEP_02737	53.9	0.00000000909	N/A	N/A
structural_annotation	UHGV-2172737_23	PF10548	N/A	N/A	N/A	N/A
KOfam	UHGV-2172737_26	K22300	51.8	0.000000000000019	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2172737_26	phrog_2967	52.6	0.0000000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-2172737_26	UniRef90_A0A1Y4L0A2	126.0	3.76e-35	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2172737_26	1235797.C816_03553	99.0	2.17e-24	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-2172737_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2172737_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2172737_26	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2172737_28	K02342	189.8	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-2172737_28	phrog_192	167.0	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2172737_28	UniRef90_UPI001897CA3A	333.0	0	exonuclease	N/A
eggNOG-mapper	UHGV-2172737_28	1437608.BBIA_1844	278.0	0	Exonuclease, DNA polymerase III, epsilon subunit family	N/A
PADLOC	UHGV-2172737_28	cd06127	144.6	7.69313e-43	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-2172737_28	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-2172737_28	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-2172737_28	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-2172737_28	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-2172737_28	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_29	phrog_10292	78.1	4.9e-23	N/A	unknown function
UniRef90	UHGV-2172737_29	UniRef90_A0A416W984	105.0	2.15e-26	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2172737_29	1519439.JPJG01000059_gene1953	82.4	1.14e-17	TM2 domain	N/A
Pfam	UHGV-2172737_29	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-2172737_29	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-2172737_29	COG2314	N/A	N/A	N/A	N/A
Pfam	UHGV-2172737_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2172737_30	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2172737_30	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-2172737_31	K06400	247.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2172737_31	phrog_95	263.3	0	integrase	integration and excision
UniRef90	UHGV-2172737_31	UniRef90_G9YSD9	418.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-2172737_31	1408437.JNJN01000002_gene1420	408.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-2172737_31	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2172737_31	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-2172737_31	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2172737_31	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2172737_31	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-2172737_32	UniRef90_A0A7M1RTM1	77.4	0.0000000000000123	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-2172737_32	1378168.N510_03079	67.8	0.0000000000212	N/A	N/A
KOfam	UHGV-2172737_35	K19167	108.8	6.8e-32	abiQ; protein AbiQ	N/A
PHROG	UHGV-2172737_35	phrog_9764	114.9	6.3e-34	N/A	unknown function
UniRef90	UHGV-2172737_35	UniRef90_A0A845R8D8	216.0	0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-2172737_35	1519439.JPJG01000060_gene1906	178.0	0	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-2172737_35	AbiQ	135.2	7.1e-40	AbiQ	Abi
Pfam	UHGV-2172737_35	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
structural_annotation	UHGV-2172737_35	PF13958	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_37	phrog_14030	134.7	6e-40	N/A	unknown function
UniRef90	UHGV-2172737_37	UniRef90_R6LL81	242.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-2172737_37	1121866.AUGK01000003_gene1444	97.1	2.26e-20	amidase activity	N/A
COG	UHGV-2172737_37	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-2172737_38	phrog_6918	95.6	3.3e-28	holin	lysis
UniRef90	UHGV-2172737_38	UniRef90_A0A316QCY7	103.0	1.73e-26	Holin	N/A
eggNOG-mapper	UHGV-2172737_38	1297617.JPJD01000020_gene301	101.0	1.21e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-2172737_38	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-2172737_38	PF09682,TIGR01673	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2172737_41	1519439.JPJG01000060_gene1895	82.8	0.00000000000000132	N/A	N/A
structural_annotation	UHGV-2172737_41	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_43	phrog_10993	69.0	5.6e-20	Hoc-like head decoration	head and packaging
UniRef90	UHGV-2172737_43	UniRef90_UPI000834AF98	109.0	1.26e-24	N/A	N/A
eggNOG-mapper	UHGV-2172737_43	718252.FP2_16970	82.4	0.00000000000000328	N/A	N/A
Pfam	UHGV-2172737_43	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-2172737_43	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2172737_44	1519439.JPJG01000060_gene1892	51.6	0.00000311	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-2172737_44	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-2172737_45	PF16408,NF033510	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_46	phrog_10898	286.7	0	N/A	unknown function
UniRef90	UHGV-2172737_46	UniRef90_A0A7U3NJT3	187.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-2172737_46	717606.PaecuDRAFT_2136	67.8	0.00000000028	S-layer homology domain	N/A
COG	UHGV-2172737_46	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-2172737_46	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2172737_48	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2172737_49	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_50	phrog_26795	129.4	1e-38	N/A	unknown function
UniRef90	UHGV-2172737_50	UniRef90_A0A5J6T4K8	134.0	3.01e-32	Minor tail protein	N/A
eggNOG-mapper	UHGV-2172737_50	1382315.JPOI01000001_gene271	135.0	1.22e-33	N/A	N/A
structural_annotation	UHGV-2172737_50	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_51	phrog_37549	81.7	8.9e-28	virion structural protein	head and packaging
UniRef90	UHGV-2172737_51	UniRef90_A0A3D0W045	234.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-2172737_51	1195236.CTER_5103	131.0	3.11e-29	N/A	N/A
structural_annotation	UHGV-2172737_51	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_52	phrog_8462	126.9	2.2e-37	tail length tape measure protein	tail
UniRef90	UHGV-2172737_52	UniRef90_A0A1M6L1P7	239.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-2172737_52	1195236.CTER_5104	220.0	0	nuclear chromosome segregation	N/A
COG	UHGV-2172737_52	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-2172737_52	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2172737_53	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_54	phrog_88	84.5	1.3e-24	major tail protein	tail
UniRef90	UHGV-2172737_54	UniRef90_S0FUN2	114.0	9.42e-29	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-2172737_54	1195236.CTER_5106	114.0	1.58e-29	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-2172737_54	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-2172737_54	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2172737_54	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_55	phrog_5	43.4	0.0000000000072	tail completion or Neck1 protein	connector
structural_annotation	UHGV-2172737_55	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2172737_56	1487921.DP68_11350	59.3	0.000000000557	N/A	N/A
structural_annotation	UHGV-2172737_56	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_57	phrog_1951	74.8	8.1e-22	head-tail adaptor	connector
UniRef90	UHGV-2172737_57	UniRef90_A0A1F8UNT5	65.1	0.0000000000123	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-2172737_57	1094508.Tsac_2422	52.4	0.000000225	Phage head-tail joining protein	N/A
Pfam	UHGV-2172737_57	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-2172737_57	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-2172737_57	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-2172737_57	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_58	phrog_5223	43.8	0.0000000000035	neck protein	connector
UniRef90	UHGV-2172737_58	UniRef90_E6MGY0	58.5	0.00000000355	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-2172737_58	887929.HMP0721_1264	58.5	0.000000000596	N/A	N/A
PHROG	UHGV-2172737_59	phrog_10	179.9	0	major head protein	head and packaging
UniRef90	UHGV-2172737_59	UniRef90_A0A355RXP5	399.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2172737_59	1280689.AUJC01000011_gene1521	389.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-2172737_59	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2172737_59	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2172737_59	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2172737_59	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2172737_60	K01358	132.6	4.5e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2172737_60	phrog_94	203.9	0	head maturation protease	head and packaging
UniRef90	UHGV-2172737_60	UniRef90_UPI0018979DC8	209.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-2172737_60	1280689.AUJC01000011_gene1520	194.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2172737_60	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2172737_60	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2172737_60	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_61	phrog_12	182.0	0	portal protein	head and packaging
UniRef90	UHGV-2172737_61	UniRef90_UPI001898FCCE	505.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2172737_61	1203606.HMPREF1526_00980	504.0	0	Portal protein	N/A
Pfam	UHGV-2172737_61	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2172737_61	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2172737_61	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_62	phrog_9	384.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-2172737_62	UniRef90_UPI001D07C789	793.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-2172737_62	1203606.HMPREF1526_00981	740.0	0	Terminase	N/A
Pfam	UHGV-2172737_62	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2172737_62	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2172737_62	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2172737_62	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2172737_63	phrog_1066	128.4	2.4e-38	N/A	unknown function
eggNOG-mapper	UHGV-2172737_63	1341151.ASZU01000004_gene265	122.0	2.53e-34	N/A	N/A
structural_annotation	UHGV-2172737_63	PF05119,TIGR01558	N/A	N/A	N/A	N/A