UHGV-2173430 (vOTU-001645)

Viral Genome: UHGV-2173430

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2173430
vOTU ID	vOTU-001645
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029815\|Ga0244882_1000884
Associated BioSample	SAMEA3708726
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9788
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.64
Jumbo phage	No

Genome content
Genome length (bp)	40,327
GC content	43.34%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	95%
Average CDS length (bps)	748.12
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2173430_1	phrog_21765	100.0	2.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-2173430_1	1235792.C808_05353	107.0	3.11e-24	N/A	N/A
PHROG	UHGV-2173430_2	phrog_24267	58.0	1.6e-16	N/A	unknown function
UniRef90	UHGV-2173430_2	UniRef90_A0A0F7L5Y2	60.1	0.000000138	Phage capsid protein	N/A
eggNOG-mapper	UHGV-2173430_2	1203602.HMPREF1527_01080	86.3	1.05e-18	N/A	N/A
PHROG	UHGV-2173430_4	phrog_937	49.9	0.000000000000052	hemolysin	other
PHROG	UHGV-2173430_5	phrog_443	58.6	1.7e-16	holin	lysis
UniRef90	UHGV-2173430_5	UniRef90_UPI001BA9F6DF	96.7	1.01e-24	holin	N/A
eggNOG-mapper	UHGV-2173430_5	1235802.C823_05612	94.0	2.04e-24	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-2173430_5	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-2173430_5	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-2173430_6	K01448	110.0	2.7e-32	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2173430_6	phrog_435	163.5	0	endolysin	lysis
UniRef90	UHGV-2173430_6	UniRef90_A0A416INH6	530.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-2173430_6	552396.HMPREF0863_00263	174.0	0	hmm pf01520	N/A
Pfam	UHGV-2173430_6	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-2173430_6	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2173430_6	PF01520,PF01471,MF_00562,TIGR02883,NF038080,COG0860,COG3409	N/A	N/A	N/A	N/A
Pfam	UHGV-2173430_7	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
eggNOG-mapper	UHGV-2173430_10	641112.ACOK01000103_gene525	52.8	0.000000755	N/A	N/A
structural_annotation	UHGV-2173430_11	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-2173430_13	K06400	273.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2173430_13	phrog_95	302.5	0	integrase	integration and excision
UniRef90	UHGV-2173430_13	UniRef90_A0A1C5MEA8	335.0	0	Transposase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-2173430_13	1235798.C817_01900	264.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-2173430_13	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2173430_13	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-2173430_13	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2173430_13	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2173430_13	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-2173430_16	K18830	46.1	0.00000000000057	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-2173430_16	phrog_8	40.7	0.000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-2173430_16	UniRef90_A0A417W960	94.7	1.61e-22	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2173430_16	1235793.C809_03587	82.8	1.74e-18	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2173430_16	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-2173430_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2173430_16	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2173430_23	K01449	75.4	1e-21	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2173430_23	phrog_17417	76.6	3.8e-22	N/A	unknown function
UniRef90	UHGV-2173430_23	UniRef90_A0A416INU5	325.0	0	Cell wall hydrolase	N/A
eggNOG-mapper	UHGV-2173430_23	742733.HMPREF9469_05073	78.2	0.00000000000000215	Cell Wall Hydrolase	N/A
Pfam	UHGV-2173430_23	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-2173430_23	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-2173430_23	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
PHROG	UHGV-2173430_24	phrog_3584	155.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2173430_24	1235800.C819_02258	233.0	0	N/A	N/A
structural_annotation	UHGV-2173430_24	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-2173430_25	K03469	46.5	0.00000000000066	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-2173430_25	phrog_531	48.0	0.00000000000023	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2173430_25	UniRef90_A0A3R6KTE4	241.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-2173430_25	643648.Slip_0653	73.9	0.0000000000000122	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-2173430_25	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-2173430_25	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-2173430_25	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
KOfam	UHGV-2173430_26	K03497	124.3	1.5e-36	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-2173430_26	phrog_6218	204.2	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2173430_26	UniRef90_A0A3R6P3N3	438.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-2173430_26	411461.DORFOR_01144	241.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-2173430_26	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-2173430_26	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-2173430_26	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2173430_26	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2173430_27	1304866.K413DRAFT_4636	80.9	5.96e-17	N/A	N/A
structural_annotation	UHGV-2173430_27	PF17457	N/A	N/A	N/A	N/A
PHROG	UHGV-2173430_28	phrog_21026	47.0	0.00000000000033	N/A	unknown function
KOfam	UHGV-2173430_30	K00390	49.1	1.1e-27	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-2173430_30	phrog_424	120.8	7.7e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2173430_30	UniRef90_A0A416INX1	570.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-2173430_30	397291.C804_05723	438.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-2173430_30	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-2173430_30	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-2173430_30	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-2173430_32	phrog_25176	147.6	3.92364e-44	N/A	unknown function
eggNOG-mapper	UHGV-2173430_32	397290.C810_01476	116.0	9.96e-32	N/A	N/A
Pfam	UHGV-2173430_33	PF14359	N/A	N/A	N/A	DUF4406
UniRef90	UHGV-2173430_34	UniRef90_A0A417WAJ1	147.0	1.03696e-43	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2173430_34	1235800.C819_02254	133.0	1.2e-38	HNH nucleases	N/A
structural_annotation	UHGV-2173430_35	NF011508	N/A	N/A	N/A	N/A
UniRef90	UHGV-2173430_37	UniRef90_A0A2Y9BMC9	63.5	0.00000000000247	DNA-binding Xre family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2173430_37	1235799.C818_04243	60.8	0.00000000000484	Cro/C1-type HTH DNA-binding domain	N/A
PHROG	UHGV-2173430_38	phrog_2164	55.9	7.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-2173430_38	1033733.CAEK01000007_gene1672	53.5	0.000000444	N/A	N/A
PHROG	UHGV-2173430_39	phrog_2412	75.8	5.3e-22	N/A	unknown function
UniRef90	UHGV-2173430_39	UniRef90_A0A3A4N1N3	68.6	0.00000000000878	Stress-induced protein	N/A
eggNOG-mapper	UHGV-2173430_39	120574.Q8SBI2_9CAUD	61.6	0.000000000592	N/A	N/A
KOfam	UHGV-2173430_40	K06909	85.8	6.2e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2173430_40	phrog_979	209.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-2173430_40	UniRef90_A0A1I0BGR2	766.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-2173430_40	411483.FAEPRAA2165_01044	621.0	0	Terminase-like family	N/A
Pfam	UHGV-2173430_40	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-2173430_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2173430_40	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2173430_41	phrog_156	315.7	0	portal protein	head and packaging
UniRef90	UHGV-2173430_41	UniRef90_A0A8D9UH10	475.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-2173430_41	748224.HMPREF9436_01396	484.0	0	N/A	N/A
structural_annotation	UHGV-2173430_41	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-2173430_42	K07584	61.8	1.4e-17	N/A	N/A
PHROG	UHGV-2173430_42	phrog_4478	73.3	2.5e-21	peptidase	other
UniRef90	UHGV-2173430_42	UniRef90_A0A650C9F1	55.1	0.000000106	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-2173430_42	1605.Lani381_0911	54.7	0.0000000321	Cysteine protease Prp	N/A
Pfam	UHGV-2173430_42	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-2173430_42	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2173430_42	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-2173430_43	phrog_13908	235.8	0	N/A	unknown function
eggNOG-mapper	UHGV-2173430_43	1410650.JHWL01000003_gene2831	137.0	1.65e-35	N/A	N/A
PHROG	UHGV-2173430_44	phrog_1357	272.7	0	major head protein	head and packaging
UniRef90	UHGV-2173430_44	UniRef90_A0A1I0BH03	436.0	0	Major capsid protein, N4-gp56 family	N/A
eggNOG-mapper	UHGV-2173430_44	748224.HMPREF9436_02545	390.0	0	N/A	N/A
Pfam	UHGV-2173430_44	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-2173430_44	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-2173430_44	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2173430_46	phrog_12105	134.8	3.20001e-40	N/A	unknown function
eggNOG-mapper	UHGV-2173430_46	1519439.JPJG01000060_gene1891	73.9	0.00000000000000266	N/A	N/A
PHROG	UHGV-2173430_47	phrog_511	231.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-2173430_47	1321782.HMPREF1986_00351	312.0	0	N/A	N/A
structural_annotation	UHGV-2173430_47	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-2173430_49	phrog_21397	41.6	0.000000000014	N/A	unknown function
eggNOG-mapper	UHGV-2173430_49	1410650.JHWL01000003_gene2815	119.0	5.34e-27	N/A	N/A
PHROG	UHGV-2173430_50	phrog_22978	448.7	0	N/A	unknown function
UniRef90	UHGV-2173430_50	UniRef90_A0A1I0BI48	1370.0	0	LPD23 domain-containing protein	N/A
eggNOG-mapper	UHGV-2173430_50	1410650.JHWL01000003_gene2814	452.0	0	N/A	N/A
Pfam	UHGV-2173430_50	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-2173430_51	phrog_1419	77.0	1.3e-27	tail protein	tail
Pfam	UHGV-2173430_51	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N