UHGV-2176721 (vOTU-146076)

Viral Genome: UHGV-2176721

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2176721
vOTU ID	vOTU-146076
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029846\|Ga0245279_100188\|provirus_1_32913
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.71 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9611
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.86
Jumbo phage	No

Genome content
Genome length (bp)	32,913
GC content	58.35%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	34
CDS density	91%
Average CDS length (bps)	885.18
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 68.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2176721_1	phrog_5929	259.8	0	portal protein	head and packaging
UniRef90	UHGV-2176721_1	UniRef90_A0A1Q6PTQ2	424.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2176721_1	1235799.C818_01019	309.0	0	Phage portal protein	N/A
Pfam	UHGV-2176721_1	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-2176721_1	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-2176721_1	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
KOfam	UHGV-2176721_2	K00558	189.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2176721_2	phrog_116	238.8	0	DNA methyltransferase	other
UniRef90	UHGV-2176721_2	UniRef90_UPI0007748620	700.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-2176721_2	693746.OBV_41630	668.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-2176721_2	oMTase_00004	420.9	0	orphan methyltransferase	RM
Pfam	UHGV-2176721_2	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-2176721_2	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-2176721_2	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-2176721_2	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-2176721_3	K01358	120.1	2.7e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2176721_3	phrog_94	165.0	0	head maturation protease	head and packaging
UniRef90	UHGV-2176721_3	UniRef90_A0A2V2FK72	246.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2176721_3	1123250.KB908423_gene716	140.0	6.39e-38	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2176721_3	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2176721_3	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2176721_3	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2176721_4	phrog_10	337.0	0	major head protein	head and packaging
UniRef90	UHGV-2176721_4	UniRef90_A0A2V2FGW4	511.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2176721_4	696281.Desru_3549	495.0	0	TIGRFAM phage major capsid protein, HK97 family	N/A
Pfam	UHGV-2176721_4	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2176721_4	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2176721_4	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2176721_4	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2176721_5	phrog_12102	60.6	2e-17	N/A	unknown function
UniRef90	UHGV-2176721_5	UniRef90_A0A7C6BMC0	90.5	5.29e-22	Head fiber protein	N/A
eggNOG-mapper	UHGV-2176721_5	689781.AUJX01000031_gene111	76.6	2.38e-17	N/A	N/A
PHROG	UHGV-2176721_6	phrog_40	85.8	3.1e-25	head-tail adaptor Ad1	connector
UniRef90	UHGV-2176721_6	UniRef90_A0A7X7FKE4	164.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-2176721_6	1121116.KB894776_gene1858	65.9	0.000000000000667	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-2176721_6	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-2176721_6	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-2176721_6	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-2176721_7	phrog_25	42.6	0.0000000000096	head closure Hc1	connector
UniRef90	UHGV-2176721_7	UniRef90_A0A7X7FI16	217.0	0	Phage head closure protein	N/A
eggNOG-mapper	UHGV-2176721_7	994573.T472_0211940	63.2	0.0000000000271	head-tail adaptor	N/A
Pfam	UHGV-2176721_7	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-2176721_7	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-2176721_7	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-2176721_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2176721_8	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-2176721_9	phrog_5	60.0	5.8e-17	tail completion or Neck1 protein	connector
Pfam	UHGV-2176721_9	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-2176721_9	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-2176721_9	PF04883,TIGR01725	N/A	N/A	N/A	N/A
KOfam	UHGV-2176721_14	K00986	268.2	0	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-2176721_14	phrog_1423	251.5	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2176721_14	UniRef90_UPI001EDF22FA	789.0	0	group II intron reverse transcriptase/maturase	N/A
eggNOG-mapper	UHGV-2176721_14	1235797.C816_00461	780.0	0	HNH nucleases	N/A
PADLOC	UHGV-2176721_14	PtuC2_00002	222.3	0	Reverse transcriptase	Septu
Pfam	UHGV-2176721_14	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
NCBIFam	UHGV-2176721_14	TIGR04416.1	N/A	N/A	group II intron reverse transcriptase/maturase	N/A
COG	UHGV-2176721_14	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-2176721_14	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-2176721_15	phrog_88	63.5	3.4e-18	major tail protein	tail
eggNOG-mapper	UHGV-2176721_15	1408422.JHYF01000021_gene974	70.9	0.000000000000033	N/A	N/A
NCBIFam	UHGV-2176721_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
KOfam	UHGV-2176721_16	K00986	302.1	0	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-2176721_16	phrog_1423	257.8	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2176721_16	UniRef90_A0A858N1W8	825.0	0	Group II intron reverse transcriptase/maturase	N/A
eggNOG-mapper	UHGV-2176721_16	565664.EFXG_002840	775.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-2176721_16	PtuC2_00002	220.1	0	Reverse transcriptase	Septu
Pfam	UHGV-2176721_16	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
Pfam	UHGV-2176721_16	PF01844	N/A	N/A	HNH endonuclease	HNH
NCBIFam	UHGV-2176721_16	TIGR04416.1	N/A	N/A	group II intron reverse transcriptase/maturase	N/A
COG	UHGV-2176721_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-2176721_16	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
KOfam	UHGV-2176721_19	K10421	61.2	4.3e-19	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-2176721_19	phrog_13339	347.1	0	tail length tape measure protein	tail
UniRef90	UHGV-2176721_19	UniRef90_A0A1Q6PTR6	1790.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-2176721_19	1289596.M1PKM6_9CAUD	305.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-2176721_19	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-2176721_19	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
structural_annotation	UHGV-2176721_19	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-2176721_20	phrog_33	70.9	3e-20	distal tail protein Dit	tail
UniRef90	UHGV-2176721_20	UniRef90_A0A7C6FS63	322.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2176721_20	439292.Bsel_2995	155.0	2.24208e-44	tail component	N/A
NCBIFam	UHGV-2176721_20	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-2176721_20	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2176721_20	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-2176721_21	K07473	64.0	3.9e-18	dinJ; DNA-damage-inducible protein J	N/A
PHROG	UHGV-2176721_21	phrog_2737	64.2	1.3e-18	N/A	unknown function
UniRef90	UHGV-2176721_21	UniRef90_UPI0006C5AC41	93.2	6.6e-23	type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
eggNOG-mapper	UHGV-2176721_21	1499680.CCFE01000027_gene3360	84.7	2.65e-20	RelB antitoxin	N/A
Pfam	UHGV-2176721_21	PF04221	N/A	N/A	RelB antitoxin	RelB
NCBIFam	UHGV-2176721_21	TIGR02384.1	N/A	N/A	type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
COG	UHGV-2176721_21	COG3077	N/A	N/A	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	N/A
UniRef90	UHGV-2176721_23	UniRef90_A0A3D4QB94	251.0	0	N/A	N/A
eggNOG-mapper	UHGV-2176721_23	887325.HMPREF0381_2362	187.0	0	N/A	N/A
PADLOC	UHGV-2176721_23	darT	107.8	1.7e-31	N/A	N/A
Pfam	UHGV-2176721_23	PF14487	N/A	N/A	ssDNA thymidine ADP-ribosyltransferase, DarT	DarT
KOfam	UHGV-2176721_24	K09388	49.9	0.000000000000044	N/A	N/A
PHROG	UHGV-2176721_24	phrog_335	131.8	3.8e-39	phosphatase	other
UniRef90	UHGV-2176721_24	UniRef90_A0A3D4QBY5	583.0	0	Appr-1-p processing protein	N/A
eggNOG-mapper	UHGV-2176721_24	641112.ACOK01000083_gene3282	432.0	0	Macro domain	N/A
PADLOC	UHGV-2176721_24	darG	301.8	0	N/A	N/A
Pfam	UHGV-2176721_24	PF01661	N/A	N/A	Macro domain	Macro
COG	UHGV-2176721_24	COG3465	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2176721_24	PF20016,MF_01205,NF001666,COG2110,COG3465	N/A	N/A	N/A	N/A
PHROG	UHGV-2176721_25	phrog_1067	213.1	0	minor head protein	head and packaging
UniRef90	UHGV-2176721_25	UniRef90_A0A1Q6PU45	765.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-2176721_25	386415.NT01CX_2159	184.0	0	Phage minor structural protein	N/A
Pfam	UHGV-2176721_25	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
Pfam	UHGV-2176721_25	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2176721_25	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2176721_25	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2176721_25	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2176721_26	phrog_1330	40.6	0.000000000012	tail protein	tail
eggNOG-mapper	UHGV-2176721_26	240302.BN982_04120	65.9	0.0000000681	Phage minor structural protein	N/A
COG	UHGV-2176721_26	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
KOfam	UHGV-2176721_27	K18454	49.9	0.0000000000000056	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
eggNOG-mapper	UHGV-2176721_27	1195236.CTER_2813	93.2	7e-19	Belongs to the glycosyl hydrolase 18 family	N/A
Pfam	UHGV-2176721_27	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
COG	UHGV-2176721_27	COG3325	N/A	N/A	Chitinase, GH18 family	N/A
PHROG	UHGV-2176721_28	phrog_199	99.4	3.1e-29	holin	lysis
UniRef90	UHGV-2176721_28	UniRef90_A0A2V2FVQ7	283.0	0	Holin	N/A
eggNOG-mapper	UHGV-2176721_28	877414.ATWA01000019_gene2054	185.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-2176721_28	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2176721_28	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2176721_28	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2176721_28	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-2176721_29	phrog_2649	56.6	3.5e-16	endolysin	lysis
UniRef90	UHGV-2176721_29	UniRef90_A0A1Q6PTR5	427.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-2176721_29	411473.RUMCAL_00214	97.1	3.43e-19	NLP P60 protein	N/A
Pfam	UHGV-2176721_29	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-2176721_29	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-2176721_29	PF01471,PF19087,NF041850,TIGR02219,COG3409,COG3103,COG0791	N/A	N/A	N/A	N/A
UniRef90	UHGV-2176721_30	UniRef90_A0A2V2G0W6	160.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2176721_30	1203606.HMPREF1526_01024	131.0	2.59e-39	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2176721_30	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-2176721_30	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-2176721_31	UniRef90_UPI00041DBF60	73.6	3.72e-16	Arc family DNA-binding protein	N/A
eggNOG-mapper	UHGV-2176721_31	537013.CLOSTMETH_03458	80.5	1.23e-19	N/A	N/A
structural_annotation	UHGV-2176721_31	PF03869,NF008671,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-2176721_32	UniRef90_UPI0018751AF4	175.0	0	SLOG family protein	N/A
eggNOG-mapper	UHGV-2176721_32	411467.BACCAP_02707	176.0	0	Belongs to the UPF0398 family	N/A
COG	UHGV-2176721_32	COG4474	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2176721_32	PF06908,MF_01575,NF010181,COG4474	N/A	N/A	N/A	N/A
KOfam	UHGV-2176721_34	K14059	224.9	0	int; integrase	N/A
PHROG	UHGV-2176721_34	phrog_1	199.2	0	integrase	integration and excision
UniRef90	UHGV-2176721_34	UniRef90_UPI0013DDE0CE	160.0	5.59959e-42	site-specific integrase	N/A
eggNOG-mapper	UHGV-2176721_34	751945.Theos_2089	121.0	5.13e-28	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2176721_34	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2176721_34	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2176721_34	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-2176721_34	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A