UHGV-2183224 (vOTU-014421)

Viral Genome: UHGV-2183224

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2183224
vOTU ID	vOTU-014421
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029873\|Ga0245321_100614\|provirus_5540_36730
Associated BioSample	SAMEA3449371
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9802
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.17
Jumbo phage	No

Genome content
Genome length (bp)	31,191
GC content	57.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	94%
Average CDS length (bps)	651.33
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2183224_1	phrog_1129	62.1	6.6e-18	holin	lysis
UniRef90	UHGV-2183224_1	UniRef90_A0A8J6J3M3	100.0	4.1e-26	Phage holin family protein	N/A
eggNOG-mapper	UHGV-2183224_1	665956.HMPREF1032_03272	96.7	3.64e-25	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-2183224_1	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-2183224_1	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_2	phrog_4105	75.8	4.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-2183224_2	397288.C806_00115	64.3	0.00000000000687	N/A	N/A
KOfam	UHGV-2183224_3	K01447	68.0	1.9e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2183224_3	phrog_1794	143.2	2.40042e-42	amidase	lysis
UniRef90	UHGV-2183224_3	UniRef90_R5AZE6	300.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-2183224_3	1235800.C819_03946	211.0	0	Ami_2	N/A
Pfam	UHGV-2183224_3	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-2183224_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2183224_3	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2183224_4	PF00629,NF033675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2183224_5	1536772.R70723_29220	75.1	0.0000000000528	ATPase involved in DNA repair	N/A
COG	UHGV-2183224_5	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-2183224_6	phrog_3558	193.0	0	tail protein	tail
UniRef90	UHGV-2183224_6	UniRef90_A0A3D1VAY1	421.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-2183224_6	1111121.HMPREF1247_1242	144.0	1.65e-34	Prophage endopeptidase tail	N/A
Pfam	UHGV-2183224_6	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2183224_6	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2183224_6	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2183224_6	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2183224_7	1235799.C818_04232	61.6	0.0000000385	phage tail	N/A
COG	UHGV-2183224_7	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2183224_7	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_8	phrog_23464	317.4	0	N/A	unknown function
UniRef90	UHGV-2183224_8	UniRef90_A0A1C6H5M9	307.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-2183224_8	1378168.N510_03078	222.0	0	Tail tape measure protein, TP901 family	N/A
COG	UHGV-2183224_8	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-2183224_8	PF20155,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2183224_9	1219626.HMPREF1639_07460	89.7	2.98e-22	N/A	N/A
structural_annotation	UHGV-2183224_10	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_11	phrog_2175	69.2	6.8e-20	protein with Ig domain	other
eggNOG-mapper	UHGV-2183224_11	1219626.HMPREF1639_07450	194.0	0	N/A	N/A
structural_annotation	UHGV-2183224_11	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2183224_12	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-2183224_13	UniRef90_A0A3A6N4L9	82.0	1.86e-17	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2183224_13	1033744.CAEL01000029_gene1278	63.9	0.0000000000306	N/A	N/A
structural_annotation	UHGV-2183224_13	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_14	phrog_1951	66.4	3.2e-19	head-tail adaptor	connector
UniRef90	UHGV-2183224_14	UniRef90_UPI00189BA764	77.0	2.18e-16	phage head closure protein	N/A
eggNOG-mapper	UHGV-2183224_14	1121428.DESHY_20140___1	58.2	0.00000000088	head-tail adaptor	N/A
COG	UHGV-2183224_14	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-2183224_14	PF05354,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_15	phrog_5223	81.8	4.8e-24	neck protein	connector
UniRef90	UHGV-2183224_15	UniRef90_UPI000BEC4770	76.6	2.86e-16	head-tail connector protein	N/A
eggNOG-mapper	UHGV-2183224_15	411465.PEPMIC_00737	62.4	0.0000000000195	N/A	N/A
NCBIFam	UHGV-2183224_15	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-2183224_15	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_16	phrog_10	173.7	0	major head protein	head and packaging
UniRef90	UHGV-2183224_16	UniRef90_A0A2V2GLX5	463.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2183224_16	1094508.Tsac_2424	173.0	0	Phage capsid family	N/A
Pfam	UHGV-2183224_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2183224_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2183224_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2183224_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2183224_17	K06904	85.4	9e-25	N/A	N/A
PHROG	UHGV-2183224_17	phrog_80	95.4	8.5e-28	head maturation protease	head and packaging
UniRef90	UHGV-2183224_17	UniRef90_A0A2V2GKJ3	282.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-2183224_17	1321814.HMPREF9089_00929	204.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-2183224_17	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-2183224_17	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-2183224_17	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_18	phrog_12	101.8	5.5e-30	portal protein	head and packaging
UniRef90	UHGV-2183224_18	UniRef90_A0A2V2GK98	594.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-2183224_18	411471.SUBVAR_05850	389.0	0	Phage portal protein	N/A
Pfam	UHGV-2183224_18	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2183224_18	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2183224_18	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_19	phrog_9	342.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-2183224_19	UniRef90_A0A2V2GHH0	948.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-2183224_19	742740.HMPREF9474_04307	753.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-2183224_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2183224_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2183224_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2183224_19	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_20	phrog_1066	83.2	2.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-2183224_20	411470.RUMGNA_02061	100.0	1.57e-25	N/A	N/A
structural_annotation	UHGV-2183224_20	PF05119,TIGR01558	N/A	N/A	N/A	N/A
UniRef90	UHGV-2183224_21	UniRef90_UPI0009BF3675	57.4	0.000000004	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2183224_21	561177.ANHYDRO_01404	52.4	0.0000000704	HNH nucleases	N/A
COG	UHGV-2183224_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-2183224_22	phrog_17658	55.2	0.0000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-2183224_22	536233.CLO_0894	69.7	0.000000000000997	N/A	N/A
structural_annotation	UHGV-2183224_22	PF18116	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_24	phrog_36	64.5	1.7e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-2183224_24	UniRef90_UPI001C10AB33	124.0	1.14e-33	N/A	N/A
eggNOG-mapper	UHGV-2183224_24	428125.CLOLEP_01806	109.0	2.05e-28	N/A	N/A
Pfam	UHGV-2183224_24	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-2183224_24	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_26	phrog_5781	68.0	1.3e-19	N/A	unknown function
UniRef90	UHGV-2183224_26	UniRef90_A0A810Q4L2	110.0	2.31e-28	N/A	N/A
eggNOG-mapper	UHGV-2183224_26	573061.Clocel_3558	78.6	1.52e-16	N/A	N/A
Pfam	UHGV-2183224_26	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-2183224_26	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-2183224_26	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_27	phrog_15609	374.8	0	N/A	unknown function
UniRef90	UHGV-2183224_27	UniRef90_A0A7G9WGA3	132.0	4.05e-32	N/A	N/A
eggNOG-mapper	UHGV-2183224_27	1378168.N510_01841	120.0	6.04e-28	N/A	N/A
Pfam	UHGV-2183224_27	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-2183224_27	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-2183224_27	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_28	phrog_8470	445.4	0	N/A	unknown function
UniRef90	UHGV-2183224_28	UniRef90_UPI001C1063FF	269.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-2183224_28	1378168.N510_01842	221.0	0	PcfJ-like protein	N/A
Pfam	UHGV-2183224_28	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-2183224_28	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_29	phrog_38338	71.1	1.8e-20	N/A	unknown function
UniRef90	UHGV-2183224_29	UniRef90_UPI00137B3A8C	78.6	6.06e-16	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-2183224_29	693746.OBV_25410	97.1	1.78e-24	N/A	N/A
KOfam	UHGV-2183224_30	K03700	87.6	1.6e-25	recU; recombination protein U	N/A
PHROG	UHGV-2183224_30	phrog_843	137.3	5.70006e-41	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2183224_30	UniRef90_A0A1H0W5Y9	162.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-2183224_30	537013.CLOSTMETH_01720	150.0	4.47014e-43	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-2183224_30	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-2183224_30	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-2183224_30	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_31	phrog_3584	129.0	3.7e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2183224_31	641107.CDLVIII_1314	107.0	1.75e-25	N/A	N/A
structural_annotation	UHGV-2183224_31	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-2183224_33	K06284	118.6	3.2e-35	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-2183224_33	phrog_4681	103.4	7.5e-31	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2183224_33	UniRef90_UPI000FDBF9C5	108.0	4.79e-29	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-2183224_33	268407.PWYN_12320	106.0	3.8e-29	AbrB family transcriptional regulator	N/A
Pfam	UHGV-2183224_33	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-2183224_33	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-2183224_33	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-2183224_33	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2183224_34	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-2183224_38	UniRef90_UPI001655DBB5	75.1	2.94e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2183224_38	706433.HMPREF9430_01294	67.0	0.000000000000105	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2183224_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2183224_38	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2183224_39	K22300	68.8	1.1e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2183224_39	phrog_8	76.5	4.6e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-2183224_39	UniRef90_A0A095XNQ4	79.3	1.25e-16	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2183224_39	706433.HMPREF9430_01295	73.9	0.0000000000000203	N/A	N/A
PADLOC	UHGV-2183224_39	retron_type_VI_hth_cluster2_1	49.4	0.000000000000096	N/A	Retron
Pfam	UHGV-2183224_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2183224_39	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2183224_39	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-2183224_40	K22300	55.4	2.8e-32	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2183224_40	phrog_8	106.9	1.1e-31	transcriptional regulator	transcription regulation
UniRef90	UHGV-2183224_40	UniRef90_A0A8J8SBC4	77.8	0.0000000000000848	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-2183224_40	1121335.Clst_0369	77.8	5.33e-16	helix-turn-helix	N/A
Pfam	UHGV-2183224_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-2183224_40	PF15731	N/A	N/A	Antitoxin component of bacterial toxin-antitoxin system, MqsA	MqsA_antitoxin
NCBIFam	UHGV-2183224_40	TIGR03830.1	N/A	N/A	type II TA system antitoxin MqsA family protein	N/A
COG	UHGV-2183224_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2183224_40	PF01381,PF21291,NF041951,TIGR02607,COG3655,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_41	phrog_1914	101.5	3.1e-30	N/A	unknown function
UniRef90	UHGV-2183224_41	UniRef90_R6DVV5	235.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-2183224_41	1160721.RBI_I01604	145.0	1.15999e-41	N/A	N/A
Pfam	UHGV-2183224_41	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2183224_41	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2183224_41	PF06114,COG2856	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2183224_42	1262449.CP6013_2082	138.0	6.39001e-40	N/A	N/A
structural_annotation	UHGV-2183224_43	PF21227	N/A	N/A	N/A	N/A
PHROG	UHGV-2183224_44	phrog_5783	291.4	0	N/A	unknown function
UniRef90	UHGV-2183224_44	UniRef90_A0A7X5E2S9	330.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-2183224_44	665956.HMPREF1032_03590	313.0	0	NYN domain	N/A
Pfam	UHGV-2183224_44	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-2183224_44	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-2183224_44	PF01936,TIGR00288,COG1432	N/A	N/A	N/A	N/A
KOfam	UHGV-2183224_45	K14059	155.7	0	int; integrase	N/A
PHROG	UHGV-2183224_45	phrog_1	156.0	0	integrase	integration and excision
UniRef90	UHGV-2183224_45	UniRef90_A0A2Z4QB94	333.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-2183224_45	626523.GCWU000342_00320	100.0	5.22e-21	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2183224_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2183224_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2183224_45	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A