UHGV-2184488 (vOTU-062084)

Viral Genome: UHGV-2184488

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2184488
vOTU ID	vOTU-062084
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029888\|Ga0245333_100143\|provirus_4269_24363
Associated BioSample	SAMEA3449383
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.971
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.02
Jumbo phage	No

Genome content
Genome length (bp)	20,095
GC content	38.95%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	28
CDS density	83%
Average CDS length (bps)	597.21
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2184488_1	K14059	258.1	0	int; integrase	N/A
PHROG	UHGV-2184488_1	phrog_1	237.9	0	integrase	integration and excision
UniRef90	UHGV-2184488_1	UniRef90_A0A173XJ70	795.0	0	Integrase	N/A
eggNOG-mapper	UHGV-2184488_1	411459.RUMOBE_01402	795.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2184488_1	PF02920	N/A	N/A	DNA binding domain of tn916 integrase	Integrase_DNA
Pfam	UHGV-2184488_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2184488_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2184488_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2184488_1	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2184488_8	411459.RUMOBE_01397	207.0	0	N/A	N/A
UniRef90	UHGV-2184488_9	UniRef90_A0A174ECN7	140.0	1.90997e-42	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2184488_9	767817.Desgi_2502	105.0	3.52e-29	Cro/C1-type HTH DNA-binding domain	N/A
PHROG	UHGV-2184488_10	phrog_34504	89.0	3.2e-26	N/A	unknown function
UniRef90	UHGV-2184488_10	UniRef90_A0A1G9MNG4	136.0	2.56e-32	Organiser of macrodomain of Terminus of chromosome	N/A
eggNOG-mapper	UHGV-2184488_10	563038.HMPREF0851_00256	129.0	2.18e-30	N/A	N/A
PHROG	UHGV-2184488_11	phrog_2657	126.2	5.8e-38	transcriptional regulator	transcription regulation
UniRef90	UHGV-2184488_11	UniRef90_A5ZQW4	437.0	0	Phage regulatory protein, Rha family	N/A
eggNOG-mapper	UHGV-2184488_11	411459.RUMOBE_01391	437.0	0	N/A	N/A
Pfam	UHGV-2184488_11	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-2184488_11	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-2184488_11	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-2184488_11	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-2184488_12	UniRef90_UPI0009C032EA	94.0	1.7e-22	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2184488_12	411459.RUMOBE_01390	178.0	0	N/A	N/A
PHROG	UHGV-2184488_13	phrog_2657	49.2	0.00000000000007	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-2184488_13	33035.JPJF01000043_gene993	109.0	1.09e-28	N/A	N/A
COG	UHGV-2184488_13	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
eggNOG-mapper	UHGV-2184488_14	411459.RUMOBE_01385	180.0	0	N/A	N/A
PHROG	UHGV-2184488_15	phrog_28918	328.1	0	N/A	unknown function
UniRef90	UHGV-2184488_15	UniRef90_A0A174LLY7	843.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2184488_15	411459.RUMOBE_01384	1753.0	0	phage tail tape measure protein	N/A
COG	UHGV-2184488_15	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-2184488_16	phrog_706	135.7	2.8e-40	N/A	unknown function
UniRef90	UHGV-2184488_16	UniRef90_UPI001C0F2CC6	212.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2184488_16	411459.RUMOBE_01383	375.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2184488_16	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2184488_16	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2184488_17	phrog_11299	108.9	4e-32	N/A	unknown function
eggNOG-mapper	UHGV-2184488_17	411459.RUMOBE_01382	258.0	0	N/A	N/A
structural_annotation	UHGV-2184488_17	PF10666	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2184488_19	397291.C804_06335	56.6	0.00000000552	N/A	N/A
PHROG	UHGV-2184488_21	phrog_1313	418.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2184488_21	UniRef90_A0A414IZC5	1375.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-2184488_21	397290.C810_05176	590.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-2184488_21	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-2184488_21	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-2184488_21	PF05272,PF12965,MF_04154,NF005477,COG5545,COG4643	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2184488_22	1298920.KI911353_gene2059	74.3	0.00000000000000107	N/A	N/A
structural_annotation	UHGV-2184488_22	PF08220,TIGR00122,COG1654	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2184488_23	1235798.C817_05064	61.2	0.00000000000783	N/A	N/A
structural_annotation	UHGV-2184488_23	PF20063,NF033787,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-2184488_24	K22300	49.7	0.000000000000073	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2184488_24	phrog_8	52.5	0.00000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-2184488_24	UniRef90_A0A1C5UC10	395.0	0	Transcriptional repressor DicA	N/A
eggNOG-mapper	UHGV-2184488_24	1408415.JHXL01000003_gene1118	58.9	0.000000113	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-2184488_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2184488_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-2184488_25	UniRef90_A0A414I3F2	620.0	0	Haloacid dehalogenase-like hydrolase	N/A
eggNOG-mapper	UHGV-2184488_25	754027.HMPREF9554_02409	457.0	0	Phosphoserine phosphatase	N/A
COG	UHGV-2184488_25	COG0560	N/A	N/A	Phosphoserine phosphatase	N/A
structural_annotation	UHGV-2184488_25	PF06888,MF_01680,TIGR00338,COG0560	N/A	N/A	N/A	N/A
UniRef90	UHGV-2184488_26	UniRef90_UPI001D066CD9	410.0	0	HEPN family nuclease	N/A
Pfam	UHGV-2184488_26	PF18736	N/A	N/A	HEPN pEK499 p136	pEK499_p136
structural_annotation	UHGV-2184488_27	PF02701	N/A	N/A	N/A	N/A
UniRef90	UHGV-2184488_28	UniRef90_A0A417R2Z8	64.3	0.0000000000029	Antitoxin	N/A
eggNOG-mapper	UHGV-2184488_28	1121115.AXVN01000001_gene1091	56.2	0.0000000045	conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN	N/A
COG	UHGV-2184488_28	COG1895	N/A	N/A	HEPN domain protein, predicted toxin of MNT-HEPN system	N/A