UHGV-2184702 (vOTU-027538)

Viral Genome: UHGV-2184702

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2184702
vOTU ID	vOTU-027538
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029815\|Ga0244882_1001875
Associated BioSample	SAMEA3708726
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.98 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.981
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.72
Jumbo phage	No

Genome content
Genome length (bp)	22,042
GC content	46.58%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	93%
Average CDS length (bps)	553.78
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2184702_2	phrog_706	137.4	8.00001e-41	N/A	unknown function
UniRef90	UHGV-2184702_2	UniRef90_A0A1C5QVP1	370.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-2184702_2	1235792.C808_05375	119.0	1.95e-31	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-2184702_2	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2184702_2	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_3	phrog_3099	132.8	1.9e-39	N/A	unknown function
eggNOG-mapper	UHGV-2184702_3	1235792.C808_05373	127.0	7.6e-35	N/A	N/A
structural_annotation	UHGV-2184702_3	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_4	phrog_3266	156.9	0	tail completion	connector
eggNOG-mapper	UHGV-2184702_4	411470.RUMGNA_02223	202.0	0	N/A	N/A
structural_annotation	UHGV-2184702_4	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_5	phrog_556	112.6	1.9e-33	minor head protein	head and packaging
UniRef90	UHGV-2184702_5	UniRef90_UPI001C8E2A32	133.0	8.63e-38	minor capsid protein	N/A
eggNOG-mapper	UHGV-2184702_5	411470.RUMGNA_02222	134.0	7.19e-39	N/A	N/A
structural_annotation	UHGV-2184702_5	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_6	phrog_3366	93.0	5.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-2184702_6	411470.RUMGNA_02221	159.0	0	N/A	N/A
Pfam	UHGV-2184702_6	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-2184702_6	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_7	phrog_541	78.9	5.4e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-2184702_7	411461.DORFOR_00743	73.2	0.00000000000000778	N/A	N/A
PHROG	UHGV-2184702_8	phrog_10	186.7	0	major head protein	head and packaging
UniRef90	UHGV-2184702_8	UniRef90_A0A1C5QUP5	638.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-2184702_8	411461.DORFOR_00744	494.0	0	COG NOG20168 non supervised orthologous group	N/A
Pfam	UHGV-2184702_8	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2184702_8	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2184702_8	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2184702_8	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_9	phrog_2303	107.5	1.3e-31	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-2184702_9	1235792.C808_05367	156.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-2184702_9	PF10788,MF_02110	N/A	N/A	N/A	N/A
KOfam	UHGV-2184702_10	K07584	52.6	0.0000000000000088	N/A	N/A
PHROG	UHGV-2184702_10	phrog_4478	83.7	1.3e-24	peptidase	other
UniRef90	UHGV-2184702_10	UniRef90_A0A1C5QUN2	186.0	0	Predicted ribosomal protein	N/A
eggNOG-mapper	UHGV-2184702_10	411462.DORLON_00788	129.0	9.56e-38	Pfam:Peptidase_C108	N/A
Pfam	UHGV-2184702_10	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-2184702_10	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2184702_10	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_11	phrog_355	56.2	5.7e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2184702_11	UniRef90_UPI000E473058	168.0	0	N/A	N/A
eggNOG-mapper	UHGV-2184702_11	397290.C810_05229	163.0	0	N/A	N/A
structural_annotation	UHGV-2184702_11	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_12	phrog_30750	98.6	2.3e-29	N/A	unknown function
PHROG	UHGV-2184702_13	phrog_115	370.4	0	minor head protein	head and packaging
UniRef90	UHGV-2184702_13	UniRef90_UPI00157127C3	657.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-2184702_13	742733.HMPREF9469_01825	444.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-2184702_13	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-2184702_13	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-2184702_13	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2184702_13	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_14	phrog_64	396.6	0	portal protein	head and packaging
UniRef90	UHGV-2184702_14	UniRef90_A0A2V2D7F4	917.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2184702_14	742733.HMPREF9469_01826	655.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-2184702_14	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-2184702_14	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-2184702_14	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-2184702_15	K06909	146.6	2.20004e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2184702_15	phrog_10250	220.6	0	N/A	unknown function
UniRef90	UHGV-2184702_15	UniRef90_A0A2V2D9F3	891.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2184702_15	903814.ELI_3215	645.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-2184702_15	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-2184702_15	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2184702_15	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2184702_15	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2184702_15	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_16	phrog_606	104.1	1.1e-30	terminase small subunit	head and packaging
UniRef90	UHGV-2184702_16	UniRef90_UPI0004BAB6EB	170.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-2184702_16	397290.C810_05185	191.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-2184702_16	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-2184702_16	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_18	phrog_9479	192.6	0	N/A	unknown function
eggNOG-mapper	UHGV-2184702_18	511680.BUTYVIB_01226	61.6	0.000000000248	N/A	N/A
structural_annotation	UHGV-2184702_18	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_19	phrog_8680	256.5	0	N/A	unknown function
UniRef90	UHGV-2184702_19	UniRef90_UPI0015711ED3	335.0	0	N/A	N/A
eggNOG-mapper	UHGV-2184702_19	411470.RUMGNA_02208	295.0	0	N/A	N/A
Pfam	UHGV-2184702_19	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-2184702_19	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_21	phrog_36	87.1	2.1e-25	transcriptional regulator	transcription regulation
UniRef90	UHGV-2184702_21	UniRef90_A0A564VXK1	159.0	0	Sigma70_r4 domain-containing protein	N/A
COG	UHGV-2184702_21	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-2184702_21	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
UniRef90	UHGV-2184702_22	UniRef90_A0A412ELZ1	439.0	0	N/A	N/A
Pfam	UHGV-2184702_22	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-2184702_22	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_24	phrog_3205	197.9	0	N/A	unknown function
UniRef90	UHGV-2184702_24	UniRef90_E6EWD7	96.3	2.06e-21	EF-hand domain-containing protein	N/A
eggNOG-mapper	UHGV-2184702_24	1158602.I590_02965	102.0	2.07e-24	N/A	N/A
PHROG	UHGV-2184702_25	phrog_8684	66.6	6.7e-20	N/A	unknown function
UniRef90	UHGV-2184702_25	UniRef90_A0A1C6E0T1	432.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-2184702_25	478749.BRYFOR_07594	107.0	1.01e-25	N/A	N/A
Pfam	UHGV-2184702_25	PF09643	N/A	N/A	YopX protein	YopX
Pfam	UHGV-2184702_25	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-2184702_25	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-2184702_27	K03111	131.4	9.8e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2184702_27	phrog_44	134.9	5.30001e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2184702_27	UniRef90_UPI001C026824	271.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2184702_27	658088.HMPREF0987_02000	208.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-2184702_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2184702_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2184702_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2184702_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2184702_27	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_30	phrog_2776	80.8	7.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-2184702_30	411490.ANACAC_00794	197.0	0	N/A	N/A
structural_annotation	UHGV-2184702_30	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2184702_31	1234679.BN424_1881	129.0	2.12e-38	N/A	N/A
KOfam	UHGV-2184702_32	K00558	160.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2184702_32	phrog_116	184.5	0	DNA methyltransferase	other
UniRef90	UHGV-2184702_32	UniRef90_UPI001C029164	703.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-2184702_32	742741.HMPREF9475_00411	535.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-2184702_32	MTase_II_00058	145.4	8.12753e-44	Type II methyltransferase	RM
Pfam	UHGV-2184702_32	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-2184702_32	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-2184702_32	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-2184702_32	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_33	phrog_463	211.1	0	anti-repressor	transcription regulation
UniRef90	UHGV-2184702_33	UniRef90_UPI00156FBCEE	384.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-2184702_33	411490.ANACAC_00813	262.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-2184702_33	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-2184702_33	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-2184702_33	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-2184702_33	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-2184702_34	phrog_2562	156.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2184702_34	UniRef90_UPI001C030B8A	537.0	0	N/A	N/A
eggNOG-mapper	UHGV-2184702_34	411461.DORFOR_00014	229.0	0	N/A	N/A
Pfam	UHGV-2184702_34	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-2184702_34	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2184702_34	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-2184702_35	K01160	43.4	0.0000000000075	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2184702_35	phrog_140	113.9	1.1e-33	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2184702_35	UniRef90_UPI001C01AEC7	291.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2184702_35	411461.DORFOR_00015	136.0	6.68e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2184702_35	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2184702_35	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2184702_35	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-2184702_36	K07455	287.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-2184702_36	phrog_148	278.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2184702_36	UniRef90_UPI00156E3AA2	530.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-2184702_36	658088.HMPREF0987_00529	354.0	0	RecT family	N/A
Pfam	UHGV-2184702_36	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-2184702_36	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-2184702_36	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-2184702_36	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A