UHGV-2190243 (vOTU-113303)

Viral Genome: UHGV-2190243

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2190243
vOTU ID	vOTU-113303
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300035655\|Ga0134475_000232\|provirus_4480_36250
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.31 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	5
Recoded stop codon	No

Viral Content
geNomad score	0.9737
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.2
Jumbo phage	No

Genome content
Genome length (bp)	28,547
GC content	43.73%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	92%
Average CDS length (bps)	656.55
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 68.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2190243_1	K01447	99.1	5.7e-29	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2190243_1	phrog_3088	163.4	0	amidase	lysis
UniRef90	UHGV-2190243_1	UniRef90_UPI001C025321	748.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2190243_1	478749.BRYFOR_07564	236.0	0	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-2190243_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-2190243_1	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-2190243_1	COG3087	N/A	N/A	Cell division protein FtsN	N/A
structural_annotation	UHGV-2190243_1	PF01510,PF18342,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-2190243_2	phrog_1129	84.5	6.5e-25	holin	lysis
UniRef90	UHGV-2190243_2	UniRef90_UPI00051B7422	152.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-2190243_2	1232453.BAIF02000013_gene3227	150.0	0	N/A	N/A
Pfam	UHGV-2190243_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-2190243_2	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-2190243_3	phrog_4105	89.8	1.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-2190243_3	411459.RUMOBE_00911	182.0	0	N/A	N/A
UniRef90	UHGV-2190243_4	UniRef90_A0A564VXL8	1143.0	0	Bacterial Ig-like domain (Group 2)	N/A
structural_annotation	UHGV-2190243_4	PF01301,PF03944,MF_00279,NF040743,COG3622	N/A	N/A	N/A	N/A
PHROG	UHGV-2190243_5	phrog_422	180.9	0	major head protein	head and packaging
UniRef90	UHGV-2190243_5	UniRef90_A0A2H4JCM6	305.0	0	Putative capsid protein	N/A
eggNOG-mapper	UHGV-2190243_5	742733.HMPREF9469_01823	303.0	0	N/A	N/A
PHROG	UHGV-2190243_6	phrog_172	157.2	0	head scaffolding protein	head and packaging
UniRef90	UHGV-2190243_6	UniRef90_A0A415FLT0	266.0	0	N/A	N/A
eggNOG-mapper	UHGV-2190243_6	742733.HMPREF9469_01824	202.0	0	N/A	N/A
Pfam	UHGV-2190243_6	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-2190243_6	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-2190243_7	phrog_478	118.8	2.4e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-2190243_7	UniRef90_R6R5K5	140.0	1.73e-40	Protein 64 protein	N/A
eggNOG-mapper	UHGV-2190243_7	1111121.HMPREF1247_0834	144.0	9.89317e-43	N/A	N/A
PHROG	UHGV-2190243_8	phrog_918	132.6	7.4e-40	N/A	unknown function
UniRef90	UHGV-2190243_8	UniRef90_UPI00115A7D93	142.0	1.0804e-42	N/A	N/A
eggNOG-mapper	UHGV-2190243_8	1140001.I571_01827	130.0	1.85e-38	N/A	N/A
Pfam	UHGV-2190243_8	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-2190243_8	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-2190243_9	phrog_30750	97.5	4.7e-29	N/A	unknown function
PHROG	UHGV-2190243_10	phrog_115	363.0	0	minor head protein	head and packaging
UniRef90	UHGV-2190243_10	UniRef90_A0A1C5S475	439.0	0	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-2190243_10	742733.HMPREF9469_01825	394.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-2190243_10	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-2190243_10	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-2190243_10	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2190243_10	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2190243_11	phrog_64	393.2	0	portal protein	head and packaging
UniRef90	UHGV-2190243_11	UniRef90_A0A416N3J2	741.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2190243_11	742733.HMPREF9469_01826	586.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-2190243_11	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-2190243_11	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-2190243_11	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-2190243_12	K06909	148.0	8.26766e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2190243_12	phrog_10250	222.3	0	N/A	unknown function
UniRef90	UHGV-2190243_12	UniRef90_UPI00156F5FD7	877.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2190243_12	903814.ELI_3215	650.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-2190243_12	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-2190243_12	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2190243_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2190243_12	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2190243_13	phrog_1889	220.7	0	terminase small subunit	head and packaging
UniRef90	UHGV-2190243_13	UniRef90_A0A373P435	401.0	0	Terminase	N/A
eggNOG-mapper	UHGV-2190243_13	33035.JPJF01000107_gene435	256.0	0	N/A	N/A
Pfam	UHGV-2190243_13	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
NCBIFam	UHGV-2190243_13	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-2190243_13	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2190243_13	PF06056,NF040601,COG5484	N/A	N/A	N/A	N/A
UniRef90	UHGV-2190243_14	UniRef90_A0A416D9R8	536.0	0	Haloacid dehalogenase-like hydrolase	N/A
eggNOG-mapper	UHGV-2190243_14	411469.EUBHAL_00869	461.0	0	N/A	N/A
COG	UHGV-2190243_14	COG0560	N/A	N/A	Phosphoserine phosphatase	N/A
structural_annotation	UHGV-2190243_14	PF06888,MF_01680,TIGR00338,COG0560	N/A	N/A	N/A	N/A
PHROG	UHGV-2190243_15	phrog_36	73.8	2.3e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-2190243_15	UniRef90_A0A373MZQ3	214.0	0	N/A	N/A
eggNOG-mapper	UHGV-2190243_15	1235800.C819_02243	92.8	3.44e-22	N/A	N/A
Pfam	UHGV-2190243_15	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-2190243_15	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-2190243_19	phrog_7566	98.0	4.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-2190243_19	411459.RUMOBE_00948	90.9	4.71e-22	N/A	N/A
KOfam	UHGV-2190243_20	K03111	131.6	8.7e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2190243_20	phrog_44	136.3	1.90001e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2190243_20	UniRef90_A0A373P5V7	247.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2190243_20	1256908.HMPREF0373_03133	197.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-2190243_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2190243_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2190243_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2190243_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2190243_20	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-2190243_21	UniRef90_A0A373P4I4	119.0	1.78e-33	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-2190243_21	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-2190243_21	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2190243_21	PF01726,MF_00732,NF041852,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-2190243_22	phrog_15077	116.7	2.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-2190243_22	97139.C824_05986	273.0	0	N/A	N/A
structural_annotation	UHGV-2190243_22	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-2190243_23	phrog_8470	236.1	0	N/A	unknown function
UniRef90	UHGV-2190243_23	UniRef90_UPI000CDA663D	948.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-2190243_23	999413.HMPREF1094_04705	555.0	0	PcfJ-like protein	N/A
Pfam	UHGV-2190243_23	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-2190243_23	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2190243_24	1235792.C808_00065	210.0	0	N/A	N/A
KOfam	UHGV-2190243_25	K03469	41.6	0.00000000002	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
UniRef90	UHGV-2190243_25	UniRef90_A0A373P426	284.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-2190243_25	411461.DORFOR_01140	94.0	1.19e-22	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-2190243_25	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-2190243_25	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-2190243_25	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-2190243_26	phrog_3584	169.1	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2190243_26	411459.RUMOBE_00953	320.0	0	N/A	N/A
structural_annotation	UHGV-2190243_26	PF01446	N/A	N/A	N/A	N/A
KOfam	UHGV-2190243_33	K07741	108.7	1.1e-31	antB; anti-repressor protein	N/A
PHROG	UHGV-2190243_33	phrog_130	206.5	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-2190243_33	UniRef90_UPI001897DB88	331.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-2190243_33	887325.HMPREF0381_0355	251.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-2190243_33	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-2190243_33	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-2190243_33	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-2190243_33	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-2190243_34	UniRef90_A0A4S2AF05	92.0	4.39e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2190243_34	768486.EHR_02785	79.3	8.77e-19	N/A	N/A
structural_annotation	UHGV-2190243_34	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-2190243_35	K22300	57.0	4.4e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2190243_35	phrog_8	70.6	2.4e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-2190243_35	UniRef90_UPI001C127CAD	130.0	1.64e-37	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2190243_35	1163671.JAGI01000002_gene3058	89.0	4.34e-21	Helix-turn-helix domain protein	N/A
Pfam	UHGV-2190243_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2190243_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-2190243_36	phrog_87	82.3	4.2e-24	metallo-protease	other
UniRef90	UHGV-2190243_36	UniRef90_A0A416P6H2	191.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2190243_36	1256908.HMPREF0373_00642	153.0	1.4013e-45	Zn peptidase	N/A
Pfam	UHGV-2190243_36	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2190243_36	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2190243_36	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-2190243_37	phrog_2158	174.2	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2190243_37	UniRef90_UPI000E5D2F29	391.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-2190243_37	626523.GCWU000342_01051	238.0	0	Abi-like protein	N/A
PADLOC	UHGV-2190243_37	AbiD	127.4	2.4e-37	AbiD	Abi
Pfam	UHGV-2190243_37	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-2190243_37	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-2190243_37	PF07751,COG4823	N/A	N/A	N/A	N/A
COG	UHGV-2190243_38	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
PHROG	UHGV-2190243_39	phrog_16228	139.7	1.19993e-41	N/A	unknown function
UniRef90	UHGV-2190243_39	UniRef90_A0A415LG12	230.0	0	Uma2 family endonuclease	N/A
eggNOG-mapper	UHGV-2190243_39	537007.BLAHAN_04955	196.0	0	Putative restriction endonuclease	N/A
Pfam	UHGV-2190243_39	PF05685	N/A	N/A	Putative restriction endonuclease	Uma2
COG	UHGV-2190243_39	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
KOfam	UHGV-2190243_40	K06400	296.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2190243_40	phrog_95	316.8	0	integrase	integration and excision
UniRef90	UHGV-2190243_40	UniRef90_A0A174S1P9	900.0	0	Resolvase, N terminal domain	N/A
eggNOG-mapper	UHGV-2190243_40	411459.RUMOBE_00967	617.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-2190243_40	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2190243_40	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-2190243_40	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2190243_40	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2190243_40	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A