UHGV-2190344 (vOTU-006570)

Viral Genome: UHGV-2190344

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2190344
vOTU ID	vOTU-006570
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300030438\|Ga0168793_1000765
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9816
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.79
Jumbo phage	No

Genome content
Genome length (bp)	40,288
GC content	54.27%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	78
CDS density	91%
Average CDS length (bps)	470.46
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2190344_1	phrog_27197	58.7	1.2e-16	N/A	unknown function
COG	UHGV-2190344_1	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-2190344_1	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2190344_2	PF21715,MF_01804,TIGR00281,COG1386	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_4	phrog_253	85.8	5.3e-25	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2190344_4	UniRef90_A0A8D9PDS3	167.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-2190344_4	411470.RUMGNA_02192	127.0	2.61e-35	Siphovirus Gp157	N/A
Pfam	UHGV-2190344_4	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-2190344_4	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_5	phrog_7838	153.3	1.4013e-45	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2190344_5	UniRef90_A0A8D9UGW3	278.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-2190344_5	742767.HMPREF9456_02052	182.0	0	N/A	N/A
structural_annotation	UHGV-2190344_5	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_6	phrog_72	59.4	5.6e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2190344_6	UniRef90_UPI000C7BF263	144.0	8.55997e-41	recombination protein NinB	N/A
eggNOG-mapper	UHGV-2190344_6	445972.ANACOL_01825	140.0	8.38e-40	N/A	N/A
structural_annotation	UHGV-2190344_6	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-2190344_7	K07451	46.6	0.0000000000006	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-2190344_7	phrog_7370	64.4	1.4e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2190344_7	UniRef90_R5XZW2	131.0	1.15e-37	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-2190344_7	1123058.KB894266_gene1536	56.6	0.000000066	HNH endonuclease	N/A
Pfam	UHGV-2190344_7	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2190344_7	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-2190344_8	K03111	137.1	1.90001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2190344_8	phrog_44	126.3	2.3e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2190344_8	UniRef90_R5SNS5	154.0	1.4013e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2190344_8	1519439.JPJG01000082_gene432	148.0	3.36312e-44	Single-strand binding protein family	N/A
Pfam	UHGV-2190344_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2190344_8	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2190344_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2190344_8	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2190344_8	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_10	phrog_16304	77.2	2.4e-22	N/A	unknown function
UniRef90	UHGV-2190344_10	UniRef90_UPI001959E913	91.3	3.38e-19	N/A	N/A
eggNOG-mapper	UHGV-2190344_10	1226322.HMPREF1545_00016	63.9	0.00000000118	HNH endonuclease	N/A
Pfam	UHGV-2190344_10	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-2190344_10	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-2190344_10	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-2190344_11	K02315	134.1	1.3e-39	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-2190344_11	phrog_50	132.5	3.6e-39	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2190344_11	UniRef90_A0A810Q3X8	293.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-2190344_11	1507.HMPREF0262_00302	187.0	0	Bacterial dnaA protein	N/A
Pfam	UHGV-2190344_11	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-2190344_11	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-2190344_11	PF01695,MF_01919,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_12	phrog_757	229.3	0	DNA methyltransferase	other
UniRef90	UHGV-2190344_12	UniRef90_UPI0006A41431	254.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-2190344_12	1235790.C805_00032	260.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-2190344_12	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-2190344_12	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_15	phrog_38832	70.6	6.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-2190344_15	665956.HMPREF1032_00143	82.8	6.45e-18	N/A	N/A
PHROG	UHGV-2190344_16	phrog_3136	136.2	9.70007e-41	N/A	unknown function
UniRef90	UHGV-2190344_16	UniRef90_A0A6N7TMC2	126.0	1.24e-33	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-2190344_16	693746.OBV_25380	74.3	0.0000000000000798	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-2190344_16	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-2190344_16	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
UniRef90	UHGV-2190344_18	UniRef90_A0A8D9PDT5	64.3	0.0000000000342	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-2190344_21	phrog_190	124.6	6.5e-37	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2190344_21	UniRef90_UPI0005288167	125.0	9.47e-35	N/A	N/A
eggNOG-mapper	UHGV-2190344_21	1121105.ATXL01000006_gene1363	97.4	3.84e-24	N/A	N/A
Pfam	UHGV-2190344_21	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-2190344_21	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2190344_24	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2190344_25	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
KOfam	UHGV-2190344_26	K22300	50.1	0.000000000000058	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2190344_26	phrog_8	71.4	1.7e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-2190344_26	UniRef90_A0A8D9PDC4	108.0	2.07e-29	Repressor protein	N/A
eggNOG-mapper	UHGV-2190344_26	1226322.HMPREF1545_00039	74.7	8.61e-17	sequence-specific DNA binding	N/A
Pfam	UHGV-2190344_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2190344_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2190344_26	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_27	phrog_606	84.3	1.4e-24	terminase small subunit	head and packaging
UniRef90	UHGV-2190344_27	UniRef90_UPI00195648BB	172.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-2190344_27	397290.C810_05185	147.0	2.14399e-43	DNA-packaging protein gp3	N/A
Pfam	UHGV-2190344_27	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-2190344_27	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-2190344_28	K06909	379.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2190344_28	phrog_3717	160.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-2190344_28	UniRef90_A0A4D7AZ70	723.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2190344_28	411461.DORFOR_01162	460.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2190344_28	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-2190344_28	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2190344_28	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2190344_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2190344_28	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_29	phrog_64	165.4	0	portal protein	head and packaging
UniRef90	UHGV-2190344_29	UniRef90_UPI0018A8A301	595.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2190344_29	1235800.C819_02239	89.0	3.93e-16	phage portal protein, SPP1	N/A
Pfam	UHGV-2190344_29	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2190344_29	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_30	phrog_15127	131.0	9.80068e-42	head protein	head and packaging
UniRef90	UHGV-2190344_30	UniRef90_A0A385EED1	100.0	3.36e-18	INTEIN_C_TER domain-containing protein	N/A
eggNOG-mapper	UHGV-2190344_30	1111135.HMPREF1248_0663	167.0	1.3e-40	cell adhesion	N/A
Pfam	UHGV-2190344_30	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-2190344_30	TIGR01445.1	N/A	N/A	intein N-terminal splicing region	N/A
COG	UHGV-2190344_30	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_32	phrog_5	57.3	3.7e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-2190344_32	UniRef90_A0A4D7AJK9	178.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2190344_32	1280685.AUKC01000004_gene1630	95.1	3.31e-23	N/A	N/A
structural_annotation	UHGV-2190344_32	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2190344_33	PF18152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2190344_34	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_35	phrog_544	179.7	0	major head protein	head and packaging
UniRef90	UHGV-2190344_35	UniRef90_A0A810PZM2	722.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-2190344_35	1347392.CCEZ01000005_gene1236	275.0	0	N/A	N/A
Pfam	UHGV-2190344_35	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-2190344_35	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_37	phrog_17977	73.8	1.7e-21	N/A	unknown function
UniRef90	UHGV-2190344_37	UniRef90_UPI00141211AB	92.4	6.96e-22	head-tail adaptor protein	N/A
structural_annotation	UHGV-2190344_37	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_38	phrog_17405	40.1	0.000000000055	head protein	head and packaging
structural_annotation	UHGV-2190344_38	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_39	phrog_885	86.0	3.6e-25	major tail protein	tail
UniRef90	UHGV-2190344_39	UniRef90_A0A843J9F0	223.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-2190344_39	1504822.CCNO01000012_gene492	246.0	0	N/A	N/A
structural_annotation	UHGV-2190344_39	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-2190344_40	UniRef90_A0A285PXU7	71.6	0.000000000000212	Consensus disorder prediction	N/A
PHROG	UHGV-2190344_42	phrog_6900	273.4	0	tail length tape measure protein	tail
UniRef90	UHGV-2190344_42	UniRef90_A0A3D0EFB4	238.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-2190344_42	536233.CLO_1577	300.0	0	tape measure	N/A
COG	UHGV-2190344_42	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2190344_42	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_43	phrog_1194	42.7	0.0000000000089	N/A	unknown function
structural_annotation	UHGV-2190344_43	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_44	phrog_32744	563.3	0	N/A	unknown function
eggNOG-mapper	UHGV-2190344_44	1120998.AUFC01000030_gene2247	224.0	0	N/A	N/A
structural_annotation	UHGV-2190344_44	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2190344_46	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_47	phrog_31538	40.6	0.000000000048	N/A	unknown function
PHROG	UHGV-2190344_48	phrog_13589	190.7	0	N/A	unknown function
eggNOG-mapper	UHGV-2190344_48	742733.HMPREF9469_05009	230.0	0	N/A	N/A
PHROG	UHGV-2190344_52	phrog_937	46.0	0.00000000000095	hemolysin	other
eggNOG-mapper	UHGV-2190344_52	1519439.JPJG01000023_gene533	65.9	0.000000000000875	N/A	N/A
UniRef90	UHGV-2190344_53	UniRef90_A0A1T5AMW7	97.4	1.16e-21	NAGPA domain-containing protein	N/A
structural_annotation	UHGV-2190344_53	PF09992,COG4632	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_54	phrog_13256	82.4	2.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-2190344_54	1226322.HMPREF1545_00132	71.2	0.0000000000000013	N/A	N/A
PHROG	UHGV-2190344_55	phrog_21357	86.0	3.8e-25	endolysin	lysis
UniRef90	UHGV-2190344_55	UniRef90_G9YP37	168.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-2190344_55	243164.DET1070	158.0	2.50832e-43	SMART Glycoside hydrolase, family 25 subgroup	N/A
Pfam	UHGV-2190344_55	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-2190344_55	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-2190344_55	PF10030,TIGR02594,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_57	phrog_3754	114.0	1e-33	N/A	unknown function
eggNOG-mapper	UHGV-2190344_57	1226322.HMPREF1545_00073	171.0	0	N/A	N/A
PHROG	UHGV-2190344_58	phrog_21718	106.8	1.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-2190344_58	397290.C810_05210	72.8	0.0000000000000465	N/A	N/A
PHROG	UHGV-2190344_59	phrog_22984	72.4	1.9e-21	N/A	unknown function
PHROG	UHGV-2190344_60	phrog_16490	158.2	0	N/A	unknown function
eggNOG-mapper	UHGV-2190344_60	1408437.JNJN01000043_gene803	138.0	2.55e-37	N/A	N/A
PHROG	UHGV-2190344_62	phrog_20016	179.0	0	N/A	unknown function
UniRef90	UHGV-2190344_62	UniRef90_A0A285PT46	191.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-2190344_62	397290.C810_05214	158.0	0	N/A	N/A
structural_annotation	UHGV-2190344_62	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_63	phrog_28802	61.4	1.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-2190344_64	1232443.BAIA02000078_gene6	55.1	0.0000000418	N/A	N/A
KOfam	UHGV-2190344_65	K06400	278.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2190344_65	phrog_95	297.9	0	integrase	integration and excision
UniRef90	UHGV-2190344_65	UniRef90_A0A3A9I9T1	371.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-2190344_65	357809.Cphy_2997	300.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-2190344_65	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2190344_65	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2190344_65	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2190344_65	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-2190344_66	UniRef90_A0A8D9UHA6	76.3	0.0000000000000186	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-2190344_66	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2190344_66	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2190344_66	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2190344_71	PF03885	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2190344_72	411459.RUMOBE_00961	52.8	0.000000717	Bacteriophage CI repressor helix-turn-helix domain	N/A
COG	UHGV-2190344_72	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-2190344_72	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_75	phrog_8	41.0	0.00000000004	transcriptional regulator	transcription regulation
UniRef90	UHGV-2190344_75	UniRef90_N9Z4Q7	52.4	0.00000017	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-2190344_75	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2190344_75	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_77	phrog_22529	112.4	2.1e-33	N/A	unknown function
UniRef90	UHGV-2190344_77	UniRef90_A0A352RPR8	154.0	8.40779e-45	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-2190344_77	411461.DORFOR_01578	117.0	5.9e-28	3D domain	N/A
Pfam	UHGV-2190344_77	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-2190344_77	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-2190344_77	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-2190344_78	phrog_4433	73.1	4.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-2190344_78	886882.PPSC2_p0363	96.3	3.88e-21	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-2190344_78	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A