UHGV-2198427 (vOTU-063565)

Viral Genome: UHGV-2198427

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2198427
vOTU ID	vOTU-063565
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300030381\|Ga0167499_1000818
Associated BioSample	SAMEA2737864
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.36 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9782
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.92
Jumbo phage	No

Genome content
Genome length (bp)	31,508
GC content	39.20%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	93%
Average CDS length (bps)	595.65
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 95.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-2198427_1	UniRef90_A0A412ULX9	81.3	6.62e-19	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2198427_1	411459.RUMOBE_01706	56.6	0.000000000504	N/A	N/A
Pfam	UHGV-2198427_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-2198427_2	phrog_199	78.8	6.3e-23	holin	lysis
UniRef90	UHGV-2198427_2	UniRef90_UPI00164BD6C2	228.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-2198427_2	1160721.RBI_I01565	151.0	7.00649e-45	Bacteriophage holin family	N/A
Pfam	UHGV-2198427_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2198427_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2198427_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2198427_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-2198427_3	K01447	51.4	0.000000000000022	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2198427_3	phrog_20388	276.7	0	endolysin	lysis
UniRef90	UHGV-2198427_3	UniRef90_UPI00189BF4F0	538.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2198427_3	1203606.HMPREF1526_00253	311.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-2198427_3	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-2198427_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2198427_3	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2198427_4	PF10651,PF01095	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_5	phrog_1067	121.7	6.1e-36	minor head protein	head and packaging
UniRef90	UHGV-2198427_5	UniRef90_A0A348ZBV6	202.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-2198427_5	1160721.RBI_I01574	124.0	2.4e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-2198427_5	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2198427_5	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2198427_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2198427_5	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_6	phrog_33	74.4	2.5e-21	distal tail protein Dit	tail
UniRef90	UHGV-2198427_6	UniRef90_UPI00189E4294	86.7	7.51e-17	phage tail family protein	N/A
eggNOG-mapper	UHGV-2198427_6	1160721.RBI_I01575	87.8	4.59e-18	Phage tail protein	N/A
COG	UHGV-2198427_6	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2198427_6	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_7	phrog_23464	177.4	0	N/A	unknown function
eggNOG-mapper	UHGV-2198427_7	665950.HMPREF1025_02660	136.0	5.34e-31	phage tail tape measure protein	N/A
COG	UHGV-2198427_7	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-2198427_7	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_8	phrog_23464	40.0	0.000000000029	N/A	unknown function
eggNOG-mapper	UHGV-2198427_8	457396.CSBG_01057	77.4	0.0000000000000145	tape measure	N/A
COG	UHGV-2198427_8	COG5283	N/A	N/A	Phage-related tail protein	N/A
eggNOG-mapper	UHGV-2198427_10	272562.CA_C0058	49.3	0.00000532	N/A	N/A
PHROG	UHGV-2198427_11	phrog_885	150.1	1.12104e-44	major tail protein	tail
UniRef90	UHGV-2198427_11	UniRef90_A0A3D3W9F4	170.0	0	CBM_X2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2198427_11	1321814.HMPREF9089_00935	168.0	0	N/A	N/A
structural_annotation	UHGV-2198427_11	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2198427_12	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-2198427_13	UniRef90_UPI001A9B6FBF	164.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2198427_13	1414720.CBYM010000040_gene1650	130.0	8.96e-37	N/A	N/A
Pfam	UHGV-2198427_13	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-2198427_13	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_14	phrog_1951	95.6	2.9e-28	head-tail adaptor	connector
UniRef90	UHGV-2198427_14	UniRef90_A0A374MZF9	184.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-2198427_14	1414720.CBYM010000040_gene1649	65.1	0.00000000000282	head-tail adaptor	N/A
COG	UHGV-2198427_14	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-2198427_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_15	phrog_5223	54.4	0.0000000000000018	neck protein	connector
eggNOG-mapper	UHGV-2198427_15	931626.Awo_c31020	47.8	0.00000905	N/A	N/A
NCBIFam	UHGV-2198427_15	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-2198427_15	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_16	phrog_10	152.2	4.2039e-45	major head protein	head and packaging
UniRef90	UHGV-2198427_16	UniRef90_A0A374N9V9	731.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2198427_16	1280689.AUJC01000011_gene1521	333.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-2198427_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2198427_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2198427_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2198427_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2198427_17	K01358	119.4	4.5e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2198427_17	phrog_94	185.2	0	head maturation protease	head and packaging
UniRef90	UHGV-2198427_17	UniRef90_A0A374NBM3	397.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2198427_17	1203606.HMPREF1526_00979	171.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2198427_17	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2198427_17	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2198427_17	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_18	phrog_12	179.7	0	portal protein	head and packaging
UniRef90	UHGV-2198427_18	UniRef90_A0A374NAE1	769.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2198427_18	626523.GCWU000342_01027	407.0	0	Portal protein	N/A
Pfam	UHGV-2198427_18	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2198427_18	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2198427_18	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_19	phrog_9	395.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-2198427_19	UniRef90_A0A374NB45	979.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-2198427_19	1235793.C809_01917	723.0	0	Phage Terminase	N/A
Pfam	UHGV-2198427_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2198427_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2198427_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2198427_19	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_20	phrog_1066	115.6	2.4e-34	N/A	unknown function
UniRef90	UHGV-2198427_20	UniRef90_A0A0D0SQQ8	84.3	1.41e-18	N/A	N/A
eggNOG-mapper	UHGV-2198427_20	1203606.HMPREF1526_00982	104.0	1.89e-27	N/A	N/A
PHROG	UHGV-2198427_21	phrog_119	52.7	0.000000000000006	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2198427_21	UniRef90_A0A374N9T6	164.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2198427_21	1235793.C809_01915	123.0	1.56e-34	HNH endonuclease	N/A
Pfam	UHGV-2198427_21	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2198427_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-2198427_22	phrog_8	50.2	0.000000000000057	transcriptional regulator	transcription regulation
UniRef90	UHGV-2198427_22	UniRef90_A0A412LC59	53.9	0.0000000385	XRE family transcriptional regulator	N/A
Pfam	UHGV-2198427_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2198427_22	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2198427_22	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2198427_24	PF14282,COG5570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2198427_25	NF041288,COG4830	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_26	phrog_2118	116.9	1.9e-34	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2198427_26	UniRef90_A0A374DVG7	225.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2198427_26	610130.Closa_0730	147.0	5.04467e-44	HNH endonuclease	N/A
Pfam	UHGV-2198427_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2198427_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-2198427_26	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_28	phrog_25754	65.7	2.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-2198427_28	97139.C824_00736	69.3	0.0000000000000733	N/A	N/A
structural_annotation	UHGV-2198427_28	PF10842,MF_00436,TIGR02383	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_29	phrog_22543	60.9	2e-17	N/A	unknown function
structural_annotation	UHGV-2198427_30	PF08141,MF_00667,TIGR02861,COG0231	N/A	N/A	N/A	N/A
KOfam	UHGV-2198427_31	K01160	52.5	0.000000000000015	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2198427_31	phrog_140	97.0	2e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2198427_31	UniRef90_A0A374US90	220.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2198427_31	411462.DORLON_00806	184.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2198427_31	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2198427_31	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2198427_31	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-2198427_32	K02315	128.2	7.8e-38	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-2198427_32	phrog_50	130.2	1.7e-38	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2198427_32	UniRef90_A0A374UPV4	471.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-2198427_32	445972.ANACOL_01829	197.0	0	N/A	N/A
Pfam	UHGV-2198427_32	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-2198427_32	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-2198427_32	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_33	phrog_2562	137.1	1.4e-40	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2198427_33	UniRef90_A0A374US31	474.0	0	N/A	N/A
eggNOG-mapper	UHGV-2198427_33	1232449.BAHV02000016_gene1836	174.0	0	N/A	N/A
Pfam	UHGV-2198427_33	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-2198427_33	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2198427_33	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-2198427_34	K06167	47.3	0.00000000000027	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-2198427_34	phrog_392	103.4	3.1e-30	metal-dependent hydrolase	other
UniRef90	UHGV-2198427_34	UniRef90_A0A373XYI8	249.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-2198427_34	665956.HMPREF1032_03101	176.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-2198427_34	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-2198427_34	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-2198427_34	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-2198427_35	K07455	188.0	0	recT; recombination protein RecT	N/A
PHROG	UHGV-2198427_35	phrog_148	210.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2198427_35	UniRef90_A0A374N9W0	413.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-2198427_35	1095750.HMPREF9970_1675	280.0	0	RecT family	N/A
Pfam	UHGV-2198427_35	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-2198427_35	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-2198427_35	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-2198427_35	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_36	phrog_674	157.8	0	N/A	unknown function
UniRef90	UHGV-2198427_36	UniRef90_A0A374N9T8	379.0	0	N/A	N/A
eggNOG-mapper	UHGV-2198427_36	1408437.JNJN01000039_gene373	184.0	0	N/A	N/A
Pfam	UHGV-2198427_36	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-2198427_36	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-2198427_42	phrog_6058	40.8	0.000000000025	N/A	unknown function
structural_annotation	UHGV-2198427_42	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-2198427_44	K22300	50.9	0.000000000000031	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-2198427_44	UniRef90_A0A374MYQ7	220.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2198427_44	411470.RUMGNA_00191	106.0	5.05e-28	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-2198427_44	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-2198427_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2198427_44	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-2198427_46	UniRef90_A0A374DTF3	99.8	1.21e-23	N/A	N/A
KOfam	UHGV-2198427_47	K14059	92.2	8.4e-27	int; integrase	N/A
PHROG	UHGV-2198427_47	phrog_1	117.2	1.9e-34	integrase	integration and excision
UniRef90	UHGV-2198427_47	UniRef90_A0A1G5CL52	793.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-2198427_47	693746.OBV_41260	192.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2198427_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2198427_47	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-2198427_47	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-2198427_48	K01494	42.8	0.0000000000083	dcd; dCTP deaminase [EC:3.5.4.13]	N/A
UniRef90	UHGV-2198427_48	UniRef90_A0A4R2TWB3	118.0	2.74e-26	Deoxycytidine triphosphate deaminase	N/A
eggNOG-mapper	UHGV-2198427_48	931626.Awo_c14420	149.0	2.19e-38	Belongs to the dCTP deaminase family	N/A
COG	UHGV-2198427_48	COG0717	N/A	N/A	dCTP deaminase	N/A
KOfam	UHGV-2198427_49	K01493	54.6	0.0000000000000024	comEB; dCMP deaminase [EC:3.5.4.12]	N/A
PHROG	UHGV-2198427_49	phrog_8118	263.9	0	N/A	unknown function
UniRef90	UHGV-2198427_49	UniRef90_A0A417NAQ7	463.0	0	CMP/dCMP-type deaminase domain-containing protein	N/A
eggNOG-mapper	UHGV-2198427_49	515620.EUBELI_20475	304.0	0	Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
PADLOC	UHGV-2198427_49	dCTPase	346.3	0	N/A	N/A
Pfam	UHGV-2198427_49	PF00383	N/A	N/A	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
COG	UHGV-2198427_49	COG2131	N/A	N/A	Deoxycytidylate deaminase	N/A