UHGV-2209666 (vOTU-150439)

Viral Genome: UHGV-2209666

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2209666
vOTU ID	vOTU-150439
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300030431\|Ga0134575_100163
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.61 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.73
Jumbo phage	No

Genome content
Genome length (bp)	25,183
GC content	46.54%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	91%
Average CDS length (bps)	487.92
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 73.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-2209666_1	33035.JPJF01000039_gene281	55.1	0.00000000256	phage tail tape measure protein	N/A
COG	UHGV-2209666_1	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-2209666_3	phrog_88	101.5	7.5e-30	major tail protein	tail
UniRef90	UHGV-2209666_3	UniRef90_G9YSC5	133.0	1.24e-35	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-2209666_3	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-2209666_3	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2209666_3	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_4	phrog_5	52.3	0.000000000000012	tail completion or Neck1 protein	connector
UniRef90	UHGV-2209666_4	UniRef90_A0A1C6FG30	154.0	5.60519e-45	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-2209666_4	908340.HMPREF9406_2573	119.0	4.94e-32	N/A	N/A
NCBIFam	UHGV-2209666_4	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-2209666_4	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_5	phrog_78	44.9	0.0000000000022	tail terminator	connector
eggNOG-mapper	UHGV-2209666_5	1232446.BAIE02000002_gene829	100.0	5.18e-26	N/A	N/A
structural_annotation	UHGV-2209666_5	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_6	phrog_19734	54.9	0.0000000000000014	N/A	unknown function
UniRef90	UHGV-2209666_6	UniRef90_A0A316NL63	111.0	1.44e-29	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-2209666_6	1232446.BAIE02000002_gene828	55.1	0.000000041	N/A	N/A
structural_annotation	UHGV-2209666_6	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_7	phrog_2550	57.9	1.1e-16	N/A	unknown function
UniRef90	UHGV-2209666_7	UniRef90_UPI0008717716	69.3	0.000000000000208	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-2209666_7	1226322.HMPREF1545_00117	70.9	0.00000000000000886	N/A	N/A
structural_annotation	UHGV-2209666_7	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_8	phrog_10	199.7	0	major head protein	head and packaging
UniRef90	UHGV-2209666_8	UniRef90_UPI000679B959	1058.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-2209666_8	1226322.HMPREF1545_00116	640.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-2209666_8	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2209666_8	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2209666_8	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2209666_8	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2209666_9	K06904	148.7	4.76441e-44	N/A	N/A
PHROG	UHGV-2209666_9	phrog_80	168.7	0	head maturation protease	head and packaging
UniRef90	UHGV-2209666_9	UniRef90_A0A0D8IYC2	385.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-2209666_9	1226322.HMPREF1545_00115	253.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-2209666_9	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-2209666_9	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-2209666_9	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-2209666_9	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_10	phrog_12	196.2	0	portal protein	head and packaging
UniRef90	UHGV-2209666_10	UniRef90_A0A0D8IVL0	806.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2209666_10	1226322.HMPREF1545_00114	535.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-2209666_10	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-2209666_10	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-2209666_10	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2209666_10	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_11	phrog_9	289.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-2209666_11	UniRef90_A0A0D8IV16	1192.0	0	Terminase	N/A
eggNOG-mapper	UHGV-2209666_11	1226322.HMPREF1545_00113	900.0	0	Phage Terminase	N/A
Pfam	UHGV-2209666_11	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2209666_11	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2209666_11	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2209666_11	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_12	phrog_361	67.9	1.6e-19	terminase small subunit	head and packaging
UniRef90	UHGV-2209666_12	UniRef90_A0A1C6H6I9	197.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-2209666_12	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-2209666_12	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-2209666_12	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_13	phrog_36	60.3	3.7e-17	transcriptional regulator	transcription regulation
structural_annotation	UHGV-2209666_13	PF07374,TIGR01637	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_15	phrog_2245	94.8	7e-28	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-2209666_15	UniRef90_A0A4U9RLZ8	76.6	9.21e-16	N/A	N/A
eggNOG-mapper	UHGV-2209666_15	1519439.JPJG01000059_gene1914	70.9	0.0000000000000597	N/A	N/A
PHROG	UHGV-2209666_16	phrog_924	51.5	0.000000000000021	N/A	unknown function
UniRef90	UHGV-2209666_16	UniRef90_UPI00195D1DCA	55.5	0.0000000384	N/A	N/A
Pfam	UHGV-2209666_16	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-2209666_16	PF04448,NF041588	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2209666_20	665956.HMPREF1032_03084	103.0	5.32e-28	N/A	N/A
structural_annotation	UHGV-2209666_21	PF06257,NF011232	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_22	phrog_1384	128.5	4e-38	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-2209666_22	665956.HMPREF1032_03086	306.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-2209666_22	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_24	phrog_244	82.6	6e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2209666_24	33035.JPJF01000122_gene2460	173.0	0	N/A	N/A
structural_annotation	UHGV-2209666_24	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-2209666_26	K02314	266.7	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-2209666_26	phrog_19	263.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2209666_26	UniRef90_A0A0W7TNB4	817.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-2209666_26	665956.HMPREF1032_02618	681.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-2209666_26	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-2209666_26	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-2209666_26	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-2209666_26	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_27	phrog_2514	85.5	6.2e-25	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2209666_27	UniRef90_UPI001EE2C20A	86.3	1.37e-17	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2209666_27	665956.HMPREF1032_02617	224.0	0	Phage replisome organizer, N-terminal domain protein	N/A
COG	UHGV-2209666_27	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2209666_27	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-2209666_28	K03111	137.2	1.7e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2209666_28	phrog_44	148.3	3.64338e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2209666_28	UniRef90_A0A0W7TNC8	286.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2209666_28	665956.HMPREF1032_00430	195.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-2209666_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2209666_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2209666_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2209666_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2209666_28	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_29	phrog_7566	85.0	5.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-2209666_29	693746.OBV_24070	100.0	2.96e-26	N/A	N/A
PHROG	UHGV-2209666_30	phrog_72	58.7	7.1e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2209666_30	UniRef90_UPI001F3F3E5C	87.0	3.11e-18	recombination protein NinB	N/A
eggNOG-mapper	UHGV-2209666_30	1304866.K413DRAFT_1197	90.1	3.58e-20	N/A	N/A
PHROG	UHGV-2209666_31	phrog_14970	237.5	0	N/A	unknown function
UniRef90	UHGV-2209666_31	UniRef90_UPI00123F00F5	228.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-2209666_31	411468.CLOSCI_00315	193.0	0	double-strand break repair protein	N/A
Pfam	UHGV-2209666_31	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-2209666_31	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-2209666_31	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_33	phrog_1029	190.9	0	N/A	unknown function
eggNOG-mapper	UHGV-2209666_33	1203606.HMPREF1526_01890	190.0	0	N/A	N/A
structural_annotation	UHGV-2209666_33	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_34	phrog_997	92.1	6e-27	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2209666_34	UniRef90_R6MCS9	116.0	1.98e-31	N/A	N/A
eggNOG-mapper	UHGV-2209666_34	1203606.HMPREF1526_01889	102.0	1.05e-26	replication terminator protein, phage associated	N/A
PHROG	UHGV-2209666_35	phrog_1123	46.1	0.00000000000064	N/A	unknown function
structural_annotation	UHGV-2209666_35	PF02002,MF_01804,NF040939,COG3355	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-2209666_36	cluster_35670	148.0	0	NA	N/A
structural_annotation	UHGV-2209666_36	NF042413	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2209666_37	PF12728	N/A	N/A	N/A	N/A
KOfam	UHGV-2209666_38	K07319	252.8	0	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-2209666_38	phrog_67	141.2	6.09985e-42	DNA methyltransferase	other
UniRef90	UHGV-2209666_38	UniRef90_UPI001EDCE91E	624.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-2209666_38	696281.Desru_0371	457.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-2209666_38	MTase_II_00016	246.7	0	Type II methyltransferase	RM
Pfam	UHGV-2209666_38	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-2209666_38	COG0863	N/A	N/A	DNA modification methylase	N/A
AcrCatalog	UHGV-2209666_41	cluster_35670	135.0	5.60519e-45	NA	N/A
structural_annotation	UHGV-2209666_41	PF11998	N/A	N/A	N/A	N/A
UniRef90	UHGV-2209666_42	UniRef90_D4JVL4	48.5	0.00000913	DNA binding domain, excisionase family	N/A
Pfam	UHGV-2209666_42	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-2209666_42	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-2209666_42	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
KOfam	UHGV-2209666_44	K22300	41.3	0.000000000025	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2209666_44	phrog_8	43.2	0.0000000000075	transcriptional regulator	transcription regulation
UniRef90	UHGV-2209666_44	UniRef90_G9YSE4	95.5	1.54e-24	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-2209666_44	585501.HMPREF6123_2084	52.4	0.000000326	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2209666_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2209666_44	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2209666_44	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2209666_45	K01356	71.4	1.6e-20	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-2209666_45	phrog_4	115.9	3.8e-34	transcriptional repressor	transcription regulation
UniRef90	UHGV-2209666_45	UniRef90_A0A3A6ECX9	415.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2209666_45	665956.HMPREF1032_01654	219.0	0	Peptidase S24-like	N/A
Pfam	UHGV-2209666_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-2209666_45	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-2209666_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2209666_45	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2209666_46	phrog_4980	181.7	0	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2209666_46	UniRef90_UPI00047B3127	65.5	0.00000000407	Ltp family lipoprotein	N/A
eggNOG-mapper	UHGV-2209666_46	742818.HMPREF9451_01281	95.9	1.81e-21	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-2209666_46	PF10400	N/A	N/A	Virulence activator alpha C-term	Vir_act_alpha_C
Pfam	UHGV-2209666_46	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-2209666_46	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-2209666_46	PF02631,MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-2209666_47	K14059	203.7	0	int; integrase	N/A
PHROG	UHGV-2209666_47	phrog_1	204.2	0	integrase	integration and excision
UniRef90	UHGV-2209666_47	UniRef90_UPI00195DFC45	511.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-2209666_47	748224.HMPREF9436_01375	369.0	0	Phage integrase family	N/A
Pfam	UHGV-2209666_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2209666_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2209666_47	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A