vOTU vOTU-000504

vOTU: vOTU-000504

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-000504
Number of genomes	58
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00160 → vSUBFAM-06527 → vGENUS-16612 → vSUBGEN-30122 → vOTU-000504
Host lineage	Bacteria → Firmicutes → Bacilli → ML615J-28 → CAG-313 → CAG-313 → CAG-313 sp003539625
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1365051
Biosample ID	SAMN03283275
Genome length (bp)	56,139 bps
CheckV completeness	100.00% (Complete)
CDS count	89
CDS density	90.30%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → ML615J-28 → CAG-313 → CAG-313 → CAG-313 sp003539625	Total connections	52	Host agreement	94.23
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1365051_2	phrog_3136	62.6	3.4e-18	N/A	unknown function
UniRef90	UHGV-1365051_2	UniRef90_A0A345BNV4	95.9	1.47e-20	RNA-binding domain containing protein	N/A
structural_annotation	UHGV-1365051_2	PF12961,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1365051_4	phrog_478	76.8	2.8e-22	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1365051_4	UniRef90_S5RJ61	67.0	0.0000000000144	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-1365051_4	1123302.KB904167_gene507	68.9	0.000000000000362	N/A	N/A
eggNOG-mapper	UHGV-1365051_8	908337.HMPREF9257_0550	81.6	5.47e-17	N/A	N/A
structural_annotation	UHGV-1365051_8	PF11195	N/A	N/A	N/A	N/A
KOfam	UHGV-1365051_11	K00571	175.2	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1365051_11	phrog_67	235.6	0	DNA methyltransferase	other
UniRef90	UHGV-1365051_11	UniRef90_A0A843GVC5	427.0	0	Type II methyltransferase	N/A
eggNOG-mapper	UHGV-1365051_11	1437448.AZRT01000050_gene161	291.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1365051_11	MTase_II_00157	62.0	3.3e-34	Type II methyltransferase	RM
Pfam	UHGV-1365051_11	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1365051_11	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1365051_11	PF01555,MF_00472,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1365051_12	phrog_6251	173.3	0	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365051_12	UniRef90_UPI0002492C87	238.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1365051_12	1243664.CAVL020000054_gene3045	198.0	0	dnaD_dom DnaD domain protein	N/A
Pfam	UHGV-1365051_12	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1365051_12	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-1365051_12	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-1365051_14	K02338	48.0	0.00000000000017	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	N/A
PHROG	UHGV-1365051_14	phrog_3007	44.4	0.00000000000061	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
PHROG	UHGV-1365051_20	phrog_3490	101.0	1.1e-29	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365051_20	UniRef90_UPI001D09F9AE	119.0	5.15e-31	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1365051_20	1256908.HMPREF0373_00660	102.0	6.6e-25	N/A	N/A
structural_annotation	UHGV-1365051_20	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-1365051_22	K06167	61.8	1e-17	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1365051_22	phrog_392	131.0	1.2e-38	metal-dependent hydrolase	other
UniRef90	UHGV-1365051_22	UniRef90_A0A1V5WK38	116.0	3.28e-28	Putative metallo-hydrolase YycJ	N/A
eggNOG-mapper	UHGV-1365051_22	926692.AZYG01000059_gene79	104.0	2.21e-24	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1365051_22	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
dbAPIS	UHGV-1365051_22	APIS001	N/A	N/A	N/A	N/A
COG	UHGV-1365051_22	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1365051_22	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-1365051_24	K19171	69.7	2.1e-20	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1365051_24	phrog_77	95.2	6.3e-28	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365051_24	UniRef90_A0A6N7S5U7	79.3	0.00000000000971	AAA family ATPase	N/A
PADLOC	UHGV-1365051_24	PtuA2_00002	43.1	0.000000000013	AAA ATPase domain	Septu
Pfam	UHGV-1365051_24	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1365051_24	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1365051_24	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
Pfam	UHGV-1365051_25	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UniRef90	UHGV-1365051_28	UniRef90_A0A345BNU6	167.0	0	Spore surface glycoprotein	N/A
structural_annotation	UHGV-1365051_28	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1365051_29	phrog_16490	94.4	3.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-1365051_29	476272.RUMHYD_01770	130.0	9.13e-35	N/A	N/A
Pfam	UHGV-1365051_30	PF10905	N/A	N/A	N/A	DUF2695
structural_annotation	UHGV-1365051_38	PF01835,NF005176,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-1365051_41	phrog_1194	60.0	3.1e-17	N/A	unknown function
PHROG	UHGV-1365051_42	phrog_1535	54.0	5.7e-20	tail length tape measure protein	tail
UniRef90	UHGV-1365051_42	UniRef90_A0A1M6MXK4	70.9	0.00000000879	Phage-related protein	N/A
eggNOG-mapper	UHGV-1365051_42	428127.EUBDOL_01563	202.0	0	homoserine transmembrane transporter activity	N/A
COG	UHGV-1365051_42	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-1365051_42	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365051_45	PF16463,PF17892,MF_04116,TIGR02241,NF012211,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365051_46	PF08873,COG5003	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365051_47	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365051_49	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1365051_51	phrog_29	180.2	0	major head protein	head and packaging
UniRef90	UHGV-1365051_51	UniRef90_A0A845QYM6	165.0	1.4013e-44	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1365051_51	1123315.AUIP01000003_gene244	135.0	5.41e-34	Phage major capsid protein E	N/A
Pfam	UHGV-1365051_51	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1365051_51	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1365051_52	phrog_909	55.6	9e-16	major head protein	head and packaging
UniRef90	UHGV-1365051_52	UniRef90_A0A512PLH0	60.1	0.00000000459	Putative structural protein-phage associated	N/A
eggNOG-mapper	UHGV-1365051_52	1158607.UAU_01759	70.5	0.0000000000000874	N/A	N/A
structural_annotation	UHGV-1365051_52	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-1365051_54	phrog_64	173.7	0	portal protein	head and packaging
UniRef90	UHGV-1365051_54	UniRef90_A0A372SVP8	241.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1365051_54	1232453.BAIF02000058_gene1625	170.0	3.64338e-44	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1365051_54	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1365051_54	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1365051_55	phrog_38	152.2	4.2039e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1365051_55	UniRef90_A0A8H9QRT1	87.4	0.0000000000000165	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1365051_55	1499683.CCFF01000014_gene3915	82.0	0.00000000000015	TIGRFAM Phage	N/A
COG	UHGV-1365051_55	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365051_55	PF17289,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-1365051_68	K14415	336.1	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-1365051_68	phrog_1075	421.2	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365051_68	UniRef90_UPI001898CD6A	481.0	0	RtcB family protein	N/A
eggNOG-mapper	UHGV-1365051_68	397290.C810_01387	491.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-1365051_68	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-1365051_68	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-1365051_68	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
PHROG	UHGV-1365051_70	phrog_98	104.8	6.7e-31	N/A	unknown function
UniRef90	UHGV-1365051_70	UniRef90_UPI0010B82753	84.0	3.01e-18	YopX family protein	N/A
eggNOG-mapper	UHGV-1365051_70	169963.lmo2313	80.9	1.4e-17	YopX protein	N/A
Pfam	UHGV-1365051_70	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1365051_70	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1365051_70	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365051_71	1408438.JADD01000021_gene397	76.6	0.00000000000000514	N/A	N/A
structural_annotation	UHGV-1365051_71	PF11195	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365051_74	PF10571	N/A	N/A	N/A	N/A
PHROG	UHGV-1365051_75	phrog_986	72.2	7e-21	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365051_75	UniRef90_A0A1I7K1F8	73.6	0.00000000000000343	N/A	N/A
eggNOG-mapper	UHGV-1365051_75	442493.A8E2L6_BPPHE	59.7	0.00000000129	N/A	N/A
Pfam	UHGV-1365051_75	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-1365051_75	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365051_77	UniRef90_R6YUF4	160.0	7.00649e-45	Putative methyltransferase	N/A
eggNOG-mapper	UHGV-1365051_77	1121382.JQKG01000062_gene2832	81.3	0.00000000000000226	N/A	N/A
structural_annotation	UHGV-1365051_77	PF05891,MF_00472,NF005379,COG2227	N/A	N/A	N/A	N/A
KOfam	UHGV-1365051_88	K14060	92.0	8.5e-27	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1365051_88	phrog_125	156.2	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365051_88	UniRef90_A0A354MW10	183.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-1365051_88	411465.PEPMIC_00596	177.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1365051_88	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1365051_88	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1365051_88	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1365051	Yes	56,139	29	100	1
UHGV-0132234	No	56,139	29	100	1
UHGV-0390496	No	56,139	29	100	1
UHGV-1342189	No	56,139	29	100	1
UHGV-1009491	No	54,659	29	100	1
UHGV-1019575	No	54,659	29	100	1
UHGV-0211415	No	54,196	29	100	1
UHGV-1365917	No	52,783	29	100	1
UHGV-0271180	No	51,320	29	100	1
UHGV-0298011	No	51,320	29	100	1
UHGV-0305027	No	51,320	29	100	1
UHGV-1356132	No	51,320	29	100	1
UHGV-1389214	No	47,333	29	100	1
UHGV-1040838	No	54,567	29	100	1
UHGV-0974033	No	54,559	29	100	1
UHGV-1091700	No	53,601	29	100	1
UHGV-1869587	No	51,689	29	96	1
UHGV-0129902	No	50,940	29	95	1
UHGV-0039569	No	50,830	29	95	1
UHGV-0079906	No	50,693	29	94	1
UHGV-1412397	No	50,693	29	94	1
UHGV-0148545	No	49,298	29	92	1
UHGV-1497383	No	48,764	29	91	1
UHGV-1455509	No	47,719	29	89	1
UHGV-1454229	No	44,207	29	82	1
UHGV-0056250	No	44,161	30	82	1
UHGV-1450526	No	44,161	30	82	1
UHGV-1432536	No	41,707	29	78	1
UHGV-0416559	No	36,870	30	69	1
UHGV-0043447	No	36,855	29	69	1
UHGV-1447882	No	36,855	29	69	1
UHGV-1447884	No	36,855	29	69	1
UHGV-0057681	No	31,370	30	58	1
UHGV-1386916	No	31,370	30	58	1
UHGV-1086632	No	31,063	29	58	1
UHGV-1441365	No	28,849	30	54	1
UHGV-0051741	No	25,255	30	47	1
UHGV-1166774	No	23,544	28	44	1
UHGV-1607953	No	22,290	30	42	1
UHGV-1598132	No	22,257	28	41	1
UHGV-1610070	No	21,940	30	41	1
UHGV-1133401	No	21,613	30	40	1
UHGV-1037526	No	21,124	29	39	1
UHGV-0046279	No	19,847	30	37	1
UHGV-1714016	No	19,847	30	37	1
UHGV-1210962	No	19,513	30	36	1
UHGV-1571316	No	16,429	30	31	1
UHGV-0286166	No	15,680	29	29	1
UHGV-1703896	No	14,328	29	27	1
UHGV-1659639	No	13,950	29	26	1
UHGV-2126800	No	13,090	29	24	1
UHGV-1623060	No	12,242	30	23	1
UHGV-1583102	No	11,648	30	22	1
UHGV-0054767	No	11,420	30	21	1
UHGV-1555539	No	11,420	30	21	1
UHGV-1097392	No	10,856	29	20	1
UHGV-2130095	No	10,739	31	20	1
UHGV-1184786	No	10,047	29	18	1