vOTU vOTU-001168

vOTU: vOTU-001168

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-001168
Number of genomes	10
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp900317525
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-02522 → vGENUS-03106 → vSUBGEN-02242 → vOTU-001168
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → UBA1750 → Spyradocola → Spyradocola sp905193155
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0020027
Biosample ID	N/A
Genome length (bp)	43,917 bps
CheckV completeness	100.00% (Complete)
CDS count	59
CDS density	94.80%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → UBA1750 → Spyradocola → Spyradocola sp905193155	Total connections	19	Host agreement	94.74
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp900317525	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0020027_2	K03240	53.8	6.2e-28	EIF2B5; translation initiation factor eIF-2B subunit epsilon	N/A
PHROG	UHGV-0020027_2	phrog_20532	41.4	0.000000000015	N/A	unknown function
Pfam	UHGV-0020027_2	PF00132	N/A	N/A	Bacterial transferase hexapeptide (six repeats)	Hexapep
structural_annotation	UHGV-0020027_2	MF_00387,TIGR03992,COG2171	N/A	N/A	N/A	N/A
PHROG	UHGV-0020027_3	phrog_25567	81.7	5.9e-24	N/A	unknown function
UniRef90	UHGV-0020027_3	UniRef90_UPI0010F86420	69.7	0.000000000000708	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0020027_3	411469.EUBHAL_00738	69.7	0.000000000000113	N/A	N/A
KOfam	UHGV-0020027_6	K06909	131.6	7.7e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0020027_6	phrog_979	146.8	5.60519e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0020027_6	UniRef90_A0A2V2GR60	644.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0020027_6	1410650.JHWL01000003_gene2834	588.0	0	N/A	N/A
Pfam	UHGV-0020027_6	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0020027_6	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0020027_6	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0020027_7	phrog_156	349.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0020027_7	748224.HMPREF9436_02547	618.0	0	N/A	N/A
structural_annotation	UHGV-0020027_7	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0020027_8	K07584	70.0	4.1e-20	N/A	N/A
PHROG	UHGV-0020027_8	phrog_4478	54.3	6.6e-16	peptidase	other
UniRef90	UHGV-0020027_8	UniRef90_A0A377FVZ3	55.1	0.000000216	Predicted ribosomal protein	N/A
eggNOG-mapper	UHGV-0020027_8	1484479.DI14_00480	56.2	0.000000013	Cysteine protease Prp	N/A
Pfam	UHGV-0020027_8	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0020027_8	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020027_8	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0020027_9	phrog_13908	281.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0020027_9	1410650.JHWL01000003_gene2831	154.0	9.99967e-42	N/A	N/A
PHROG	UHGV-0020027_10	phrog_1357	284.2	0	major head protein	head and packaging
UniRef90	UHGV-0020027_10	UniRef90_A0A358AS35	431.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0020027_10	657322.FPR_02330	335.0	0	N/A	N/A
NCBIFam	UHGV-0020027_10	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0020027_10	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0020027_11	phrog_15239	54.0	0.0000000000000024	N/A	unknown function
PHROG	UHGV-0020027_12	phrog_12105	121.1	5.9e-36	N/A	unknown function
eggNOG-mapper	UHGV-0020027_12	1226322.HMPREF1545_03850	66.6	0.00000000000221	N/A	N/A
PHROG	UHGV-0020027_13	phrog_511	253.9	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0020027_13	718252.FP2_29250	366.0	0	N/A	N/A
structural_annotation	UHGV-0020027_13	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0020027_15	phrog_2649	72.9	7.1e-21	endolysin	lysis
UniRef90	UHGV-0020027_15	UniRef90_A0A358ARU4	281.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0020027_15	1410650.JHWL01000003_gene2815	154.0	6.79001e-40	N/A	N/A
Pfam	UHGV-0020027_15	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
PHROG	UHGV-0020027_16	phrog_22978	604.8	0	N/A	unknown function
UniRef90	UHGV-0020027_16	UniRef90_A0A396KH15	386.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0020027_16	1410650.JHWL01000003_gene2814	288.0	0	N/A	N/A
Pfam	UHGV-0020027_16	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
PHROG	UHGV-0020027_17	phrog_31398	48.8	0.000000000000049	N/A	unknown function
eggNOG-mapper	UHGV-0020027_17	1160721.RBI_I01572	68.2	0.000000000389	N/A	N/A
Pfam	UHGV-0020027_17	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
KOfam	UHGV-0020027_18	K06237	53.2	8.6e-16	COL4A; collagen type IV alpha	N/A
PHROG	UHGV-0020027_18	phrog_819	77.1	1.4e-22	tail protein	tail
eggNOG-mapper	UHGV-0020027_18	1232443.BAIA02000078_gene14	75.9	0.0000000000101	nuclear chromosome segregation	N/A
Pfam	UHGV-0020027_18	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0020027_18	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0020027_22	phrog_18593	74.2	1.5e-21	N/A	unknown function
UniRef90	UHGV-0020027_22	UniRef90_UPI00189D24DB	160.0	0	alpha-amylase	N/A
eggNOG-mapper	UHGV-0020027_22	1226322.HMPREF1545_04028	159.0	0	N/A	N/A
Pfam	UHGV-0020027_22	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0020027_22	PF14600	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020027_23	97138.C820_00236	107.0	9.47e-23	PFAM Phage late control gene D protein (GPD)	N/A
Pfam	UHGV-0020027_23	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0020027_23	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0020027_23	COG4193	N/A	N/A	Beta- N-acetylglucosaminidase	N/A
PHROG	UHGV-0020027_24	phrog_4105	88.8	3.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0020027_24	33035.JPJF01000043_gene996	80.5	7.12e-18	N/A	N/A
PHROG	UHGV-0020027_26	phrog_6918	58.9	8e-17	holin	lysis
UniRef90	UHGV-0020027_26	UniRef90_A0A1M4Z2U8	52.0	0.00000181	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
eggNOG-mapper	UHGV-0020027_26	1203606.HMPREF1526_01929	70.1	0.0000000000000274	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0020027_26	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
PHROG	UHGV-0020027_28	phrog_21718	54.8	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0020027_28	476272.RUMHYD_01768	62.4	0.000000000151	N/A	N/A
PHROG	UHGV-0020027_29	phrog_22984	46.2	0.00000000000088	N/A	unknown function
PHROG	UHGV-0020027_30	phrog_16490	55.2	9.5e-16	N/A	unknown function
structural_annotation	UHGV-0020027_31	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-0020027_33	K14059	218.6	0	int; integrase	N/A
PHROG	UHGV-0020027_33	phrog_1	203.3	0	integrase	integration and excision
UniRef90	UHGV-0020027_33	UniRef90_A0A7I8D1X3	369.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0020027_33	1203606.HMPREF1526_02099	293.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0020027_33	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0020027_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0020027_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0020027_33	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0020027_34	phrog_8	41.8	0.000000000017	transcriptional regulator	transcription regulation
Pfam	UHGV-0020027_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0020027_36	K22300	40.9	0.000000000037	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0020027_36	UniRef90_UPI00164CACBE	94.0	1.01e-22	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0020027_36	97138.C820_01960	87.4	7.29e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0020027_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020027_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0020027_37	phrog_14556	41.5	0.0000000000067	N/A	unknown function
eggNOG-mapper	UHGV-0020027_37	573413.Spirs_1961	66.2	0.00000000016	DNA RNA non-specific endonuclease	N/A
COG	UHGV-0020027_37	COG1864	N/A	N/A	DNA/RNA endonuclease G, NUC1	N/A
UniRef90	UHGV-0020027_42	UniRef90_A0A1C6JB46	49.3	0.00000399	Helix-turn-helix	N/A
Pfam	UHGV-0020027_42	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
PHROG	UHGV-0020027_44	phrog_997	100.7	1.1e-29	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020027_44	UniRef90_A0A316QIB2	97.4	1.1e-23	Replication terminator protein	N/A
eggNOG-mapper	UHGV-0020027_44	1203606.HMPREF1526_01889	78.2	5.71e-17	replication terminator protein, phage associated	N/A
PHROG	UHGV-0020027_45	phrog_1029	210.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0020027_45	1567010.A0A0A7S0W4_9VIRU	181.0	0	N/A	N/A
structural_annotation	UHGV-0020027_45	PF10065,COG5532	N/A	N/A	N/A	N/A
Pfam	UHGV-0020027_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0020027_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0020027_47	phrog_434	264.6	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020027_47	UniRef90_A0A7I8D1X6	310.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0020027_47	428125.CLOLEP_01823	292.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0020027_47	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0020027_47	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0020027_47	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0020027_47	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0020027_48	K07455	176.7	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0020027_48	phrog_148	176.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020027_48	UniRef90_A0A354AUE2	369.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0020027_48	272626.lin0085	209.0	0	Recombinational DNA repair protein (RecE pathway)	N/A
Pfam	UHGV-0020027_48	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0020027_48	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0020027_48	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0020027_48	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0020027_49	phrog_9474	107.5	1.3e-31	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020027_49	UniRef90_A0A1F8UZU6	81.6	0.0000000000000231	DnaB_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0020027_49	411483.FAEPRAA2165_01877	73.6	0.00000000000271	HNH endonuclease	N/A
Pfam	UHGV-0020027_49	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
COG	UHGV-0020027_49	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0020027_49	PF09681,PF07261,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0020027_50	K01160	42.1	0.000000000023	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0020027_50	phrog_1682	79.3	5.6e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020027_50	UniRef90_U2Q8K8	137.0	2.61e-39	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0020027_50	1226322.HMPREF1545_04070	137.0	4.37001e-40	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0020027_50	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0020027_50	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0020027_53	phrog_355	59.8	4.2e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020027_53	UniRef90_UPI001C3DAE12	114.0	6.8e-31	N/A	N/A
eggNOG-mapper	UHGV-0020027_53	97138.C820_00250	112.0	4.63e-31	N/A	N/A
Pfam	UHGV-0020027_53	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0020027_53	PF14359,COG3613	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0020027	Yes	43,917	58	100	1
UHGV-0015272	No	43,917	58	100	1
UHGV-0015572	No	43,917	58	100	1
UHGV-0173133	No	43,538	59	100	1
UHGV-0212955	No	43,538	59	100	1
UHGV-0030450	No	44,236	58	100	1
UHGV-0190233	No	42,000	58	96	1
UHGV-0009691	No	28,225	58	64	1
UHGV-0032778	No	23,650	58	54	1
UHGV-1829172	No	12,239	59	28	1