vOTU vOTU-001169

vOTU: vOTU-001169

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-001169
Number of genomes	17
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00210 → vSUBFAM-02898 → vGENUS-03848 → vSUBGEN-19809 → vOTU-001169
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660
Host range breadth	Family
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0340519
Biosample ID	SAMN06165016
Genome length (bp)	55,159 bps
CheckV completeness	100.00% (Complete)
CDS count	97
CDS density	90.10%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660	Total connections	40	Host agreement	95
PHIST-predicted host lineage	Bacteria → Firmicutes	Total connections	3	Host agreement	66.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0340519_1	phrog_1533	196.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0340519_1	1123263.AUKY01000015_gene1620	72.0	0.000000000465	Phage tail tape measure protein TP901	N/A
COG	UHGV-0340519_1	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0340519_1	TIGR04319	N/A	N/A	N/A	N/A
Pfam	UHGV-0340519_2	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0340519_2	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0340519_3	phrog_6616	84.6	8.6e-25	tail protein	tail
eggNOG-mapper	UHGV-0340519_3	1414720.CBYM010000002_gene560	87.8	0.00000000000000545	Phage minor structural protein	N/A
COG	UHGV-0340519_3	COG4926	N/A	N/A	Phage-related protein	N/A
eggNOG-mapper	UHGV-0340519_7	476272.RUMHYD_00002	84.0	0.000000000000159	N/A	N/A
PHROG	UHGV-0340519_10	phrog_11037	100.0	3.6e-29	N/A	unknown function
UniRef90	UHGV-0340519_10	UniRef90_R6T0A5	600.0	0	SH3 domain protein	N/A
eggNOG-mapper	UHGV-0340519_10	428127.EUBDOL_01569	149.0	2.12e-40	N/A	N/A
PHROG	UHGV-0340519_11	phrog_21718	43.8	0.0000000000045	N/A	unknown function
eggNOG-mapper	UHGV-0340519_11	397290.C810_01326	57.4	0.0000000345	N/A	N/A
eggNOG-mapper	UHGV-0340519_12	658655.HMPREF0988_00918	50.8	0.000000199	N/A	N/A
PHROG	UHGV-0340519_13	phrog_16490	165.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0340519_13	397290.C810_05212	115.0	4.59e-28	N/A	N/A
structural_annotation	UHGV-0340519_14	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0340519_17	phrog_3754	49.6	0.0000000000000038	N/A	unknown function
eggNOG-mapper	UHGV-0340519_17	1235790.C805_00054	50.4	0.00000287	N/A	N/A
Pfam	UHGV-0340519_19	PF04647	N/A	N/A	Accessory gene regulator B	AgrB
structural_annotation	UHGV-0340519_20	PF05037,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0340519_21	phrog_434	107.7	8.9e-32	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0340519_21	UniRef90_A0A7C6W834	206.0	0	YqaJ-like viral recombinase	N/A
eggNOG-mapper	UHGV-0340519_21	1121866.AUGK01000003_gene1405	193.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0340519_21	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-0340519_21	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0340519_21	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0340519_22	phrog_1252	133.1	2.7e-39	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0340519_22	UniRef90_A0A6G7WZS2	147.0	8.97e-34	DNA_pol_B domain-containing protein	N/A
eggNOG-mapper	UHGV-0340519_22	1274524.BSONL12_23100	74.3	0.0000000000444	DNA polymerase elongation subunit (Family B)	N/A
COG	UHGV-0340519_22	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-0340519_22	PF04404,PF00476,NF004418,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0340519_24	phrog_59	61.7	1.1e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0340519_25	870967.VIS19158_22878	55.5	0.0000000818	N/A	N/A
PHROG	UHGV-0340519_26	phrog_1252	158.1	0	DNA polymerase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0340519_26	1121866.AUGK01000003_gene1403	119.0	2.06e-27	DNA replication proofreading	N/A
COG	UHGV-0340519_26	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
KOfam	UHGV-0340519_31	K18959	164.7	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-0340519_31	phrog_16	171.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0340519_31	UniRef90_A0A3D2MTJ6	195.0	0	DNA or RNA helicase of superfamily II	N/A
eggNOG-mapper	UHGV-0340519_31	1449050.JNLE01000003_gene3908	178.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-0340519_31	mREase_IV_00004	63.2	1.1e-18	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0340519_31	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0340519_31	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0340519_31	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0340519_31	PF16203,PF04851,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0340519_32	1449050.JNLE01000003_gene3908	82.0	1.4e-16	Type III restriction protein res subunit	N/A
COG	UHGV-0340519_32	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
Pfam	UHGV-0340519_33	PF01870	N/A	N/A	Archaeal holliday junction resolvase (hjc)	Hjc
PHROG	UHGV-0340519_36	phrog_1156	80.5	2e-23	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0340519_36	UniRef90_A0A0A8K0P8	73.2	0.00000000000206	DNA primase/helicase, phage-associated	N/A
eggNOG-mapper	UHGV-0340519_36	46429.BV95_01663	72.0	0.0000000000227	AAA domain	N/A
Pfam	UHGV-0340519_36	PF09250	N/A	N/A	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
COG	UHGV-0340519_36	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0340519_36	PF09250,COG4983	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0340519_37	PF13058	N/A	N/A	N/A	N/A
PHROG	UHGV-0340519_40	phrog_25754	41.9	0.000000000012	N/A	unknown function
structural_annotation	UHGV-0340519_40	PF06372,MF_01077,NF011232,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0340519_42	phrog_98	80.6	7.7e-24	N/A	unknown function
UniRef90	UHGV-0340519_42	UniRef90_UPI001897D2AB	72.8	0.0000000000000974	YopX family protein	N/A
eggNOG-mapper	UHGV-0340519_42	1567011.A0A0A7RWK2_9VIRU	69.3	0.000000000000385	YopX protein	N/A
Pfam	UHGV-0340519_42	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0340519_42	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0340519_42	PF09643,TIGR01671	N/A	N/A	N/A	N/A
COG	UHGV-0340519_53	COG0542	N/A	N/A	ATP-dependent Clp protease, ATP-binding subunit ClpA	N/A
KOfam	UHGV-0340519_68	K00558	50.4	0.000000000000022	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0340519_68	phrog_17284	79.2	3.9e-23	N/A	unknown function
UniRef90	UHGV-0340519_68	UniRef90_UPI001596CCBC	171.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0340519_68	1121871.AUAT01000002_gene1371	95.1	3.7e-20	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0340519_68	oMTase_00023	73.7	5.3e-23	orphan methyltransferase	RM
Pfam	UHGV-0340519_68	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0340519_68	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0340519_69	K00558	190.1	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0340519_69	phrog_116	184.0	0	DNA methyltransferase	other
UniRef90	UHGV-0340519_69	UniRef90_UPI001C2C4E0B	363.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0340519_69	1121871.AUAT01000002_gene1371	258.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0340519_69	MTase_II_00058	201.4	0	Type II methyltransferase	RM
Pfam	UHGV-0340519_69	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0340519_69	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0340519_69	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0340519_69	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0340519_70	phrog_864	237.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0340519_70	UniRef90_A0A1S6ILZ9	288.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0340519_70	1111454.HMPREF1250_2060	243.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0340519_70	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0340519_70	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0340519_70	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0340519_70	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0340519_70	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0340519_70	PF05272,PF02257,NF005477,COG3378	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0340519_71	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0340519_72	phrog_606	53.9	0.0000000000000021	terminase small subunit	head and packaging
UniRef90	UHGV-0340519_72	UniRef90_A0A318EMC2	58.5	0.000000312	DNA-packaging protein gp3	N/A
eggNOG-mapper	UHGV-0340519_72	931276.Cspa_c57180	55.5	0.000000306	DNA-packaging protein gp3	N/A
Pfam	UHGV-0340519_72	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
PHROG	UHGV-0340519_82	phrog_38	136.4	2.2e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0340519_82	UniRef90_A0A7X2P7N6	266.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0340519_82	1298920.KI911353_gene2682	243.0	0	TIGRFAM Phage	N/A
COG	UHGV-0340519_82	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0340519_82	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0340519_84	phrog_64	149.2	2.10195e-44	portal protein	head and packaging
UniRef90	UHGV-0340519_84	UniRef90_A0A3D3Y472	166.0	4.18988e-42	Phage portal protein	N/A
eggNOG-mapper	UHGV-0340519_84	1229517.AMFD01000023_gene1319	102.0	2.96e-20	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0340519_84	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0340519_84	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0340519_85	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0340519_86	phrog_909	65.5	8.3e-19	major head protein	head and packaging
UniRef90	UHGV-0340519_86	UniRef90_A0A0K9GRK0	58.9	0.0000000134	N/A	N/A
eggNOG-mapper	UHGV-0340519_86	1158612.I580_01911	77.8	1.28e-16	N/A	N/A
PHROG	UHGV-0340519_87	phrog_29	247.9	0	major head protein	head and packaging
UniRef90	UHGV-0340519_87	UniRef90_UPI00082C04A5	326.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0340519_87	1158607.UAU_01760	267.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0340519_87	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0340519_87	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0340519_90	UniRef90_A0A7C7ERG0	56.6	0.000000059	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0340519_90	1298920.KI911353_gene2658	55.5	0.0000000204	N/A	N/A
Pfam	UHGV-0340519_90	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0340519_91	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0340519_92	PF17395,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0340519_94	phrog_158	50.3	0.00000000000005	major tail protein	tail
eggNOG-mapper	UHGV-0340519_94	469596.HMPREF9488_01310	179.0	0	N/A	N/A
structural_annotation	UHGV-0340519_94	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0340519_95	1121333.JMLH01000047_gene1012	75.9	2.67e-16	N/A	N/A
Pfam	UHGV-0340519_95	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0340519_95	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0340519_96	1121333.JMLH01000047_gene1011	81.3	1.13e-17	N/A	N/A
PHROG	UHGV-0340519_97	phrog_28918	75.7	3.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0340519_97	1121866.AUGK01000003_gene1437	144.0	1.15e-34	phage tail tape measure protein	N/A
COG	UHGV-0340519_97	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0340519	Yes	55,159	28	100	1
UHGV-0095534	No	55,159	28	100	1
UHGV-1364489	No	55,159	28	100	1
UHGV-0069348	No	55,075	28	100	1
UHGV-1364173	No	55,075	28	100	1
UHGV-0187863	No	54,846	28	100	1
UHGV-0240956	No	54,790	28	100	1
UHGV-0074674	No	56,673	28	100	1
UHGV-1505769	No	56,673	28	100	1
UHGV-0081686	No	54,917	28	100	1
UHGV-1470420	No	54,917	28	100	1
UHGV-2012151	No	42,792	28	78	1
UHGV-0108949	No	29,301	30	53	1
UHGV-2117690	No	24,684	30	45	1
UHGV-1690738	No	19,116	30	35	1
UHGV-2020299	No	12,808	28	23	1
UHGV-2104139	No	10,143	27	18	1