vOTU vOTU-001743

vOTU: vOTU-001743

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-001743
Number of genomes	11
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00017 → vSUBFAM-00796 → vGENUS-01343 → vSUBGEN-21156 → vOTU-001743
Host lineage	Bacteria → Actinobacteriota → Actinomycetia → Actinomycetales → Bifidobacteriaceae → Bifidobacterium
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1970253
Biosample ID	SAMEA2580205
Genome length (bp)	55,406 bps
CheckV completeness	100.00% (Complete)
CDS count	82
CDS density	93.43%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Actinobacteriota → Actinomycetia → Actinomycetales → Bifidobacteriaceae → Bifidobacterium	Total connections	12	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1970253_1	phrog_2645	277.7	0	major tail protein	tail
UniRef90	UHGV-1970253_1	UniRef90_A0A5J6TEU2	224.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-1970253_1	428125.CLOLEP_01415	224.0	0	N/A	N/A
structural_annotation	UHGV-1970253_1	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_2	phrog_78	43.0	0.0000000000088	tail terminator	connector
UniRef90	UHGV-1970253_2	UniRef90_D4P7D8	128.0	8.76e-37	Structural protein	N/A
eggNOG-mapper	UHGV-1970253_2	691965.D4P7D8_9CAUD	128.0	1.47e-37	N/A	N/A
structural_annotation	UHGV-1970253_2	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_3	phrog_4270	151.6	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-1970253_3	411460.RUMTOR_01344	120.0	7.51e-34	N/A	N/A
structural_annotation	UHGV-1970253_3	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_4	phrog_31690	90.4	1.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-1970253_4	1408306.JHXX01000004_gene202	63.2	0.00000000129	COG3209 Rhs family protein	N/A
COG	UHGV-1970253_4	COG3209	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1970253_4	PF18207	N/A	N/A	N/A	N/A
KOfam	UHGV-1970253_5	K06904	84.5	1.2e-24	N/A	N/A
PHROG	UHGV-1970253_5	phrog_3270	435.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1970253_5	UniRef90_A0A514CXL2	545.0	0	Major capsid and protease fusion protein	N/A
eggNOG-mapper	UHGV-1970253_5	691965.D4P7D6_9CAUD	489.0	0	peptidase activity	N/A
Pfam	UHGV-1970253_5	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
structural_annotation	UHGV-1970253_5	PF04586,PF06673,TIGR01543,TIGR01554,COG3740,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_6	phrog_12	116.5	1.7e-34	portal protein	head and packaging
UniRef90	UHGV-1970253_6	UniRef90_A0A173Z5V2	456.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1970253_6	428125.CLOLEP_01411	449.0	0	Phage portal protein	N/A
Pfam	UHGV-1970253_6	PF04860	N/A	N/A	Phage portal protein	Phage_portal
structural_annotation	UHGV-1970253_6	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_7	phrog_7021	87.3	2.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-1970253_7	411460.RUMTOR_01350	54.3	0.000000138	N/A	N/A
PHROG	UHGV-1970253_8	phrog_4247	136.3	7.89996e-41	virion structural protein	head and packaging
UniRef90	UHGV-1970253_8	UniRef90_D4P7C3	111.0	1.53e-29	Structural protein	N/A
eggNOG-mapper	UHGV-1970253_8	691965.D4P7C3_9CAUD	111.0	2.57e-30	N/A	N/A
PHROG	UHGV-1970253_9	phrog_4321	63.5	3e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1970253_9	478749.BRYFOR_08530	62.0	0.0000000000181	N/A	N/A
PHROG	UHGV-1970253_10	phrog_6291	134.3	8.1e-40	N/A	unknown function
UniRef90	UHGV-1970253_10	UniRef90_D4P7P1	89.4	3.62e-19	Gp023	N/A
PHROG	UHGV-1970253_11	phrog_9	248.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1970253_11	UniRef90_A0A7X5ECI8	887.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1970253_11	665956.HMPREF1032_00672	885.0	0	Phage Terminase	N/A
Pfam	UHGV-1970253_11	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1970253_11	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1970253_11	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1970253_11	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_12	phrog_32444	55.7	0.0000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1970253_12	428125.CLOLEP_01410	53.5	0.00000177	N/A	N/A
KOfam	UHGV-1970253_13	K01494	197.6	0	dcd; dCTP deaminase [EC:3.5.4.13]	N/A
PHROG	UHGV-1970253_13	phrog_1663	131.9	4e-39	dCTP deaminase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1970253_13	UniRef90_A0A6G5YN28	171.0	0	dUTPase, trimeric	N/A
eggNOG-mapper	UHGV-1970253_13	76636.JOEC01000002_gene1892	170.0	0	dCTP deaminase activity	N/A
Pfam	UHGV-1970253_13	PF06559	N/A	N/A	2'-deoxycytidine 5'-triphosphate deaminase (DCD)	DCD
NCBIFam	UHGV-1970253_13	TIGR02274.1	N/A	N/A	dCTP deaminase	N/A
COG	UHGV-1970253_13	COG0717	N/A	N/A	dCTP deaminase	N/A
structural_annotation	UHGV-1970253_13	PF06559,MF_00146,TIGR02274,COG0717	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_14	phrog_7502	78.9	5.8e-23	N/A	unknown function
PHROG	UHGV-1970253_15	phrog_4259	130.5	4.7e-39	N/A	unknown function
UniRef90	UHGV-1970253_15	UniRef90_D4P7B9	98.2	3.4e-24	Gp008	N/A
eggNOG-mapper	UHGV-1970253_15	691965.D4P7B9_9CAUD	98.2	5.71e-25	N/A	N/A
PHROG	UHGV-1970253_16	phrog_4303	102.9	1.5e-30	N/A	unknown function
UniRef90	UHGV-1970253_16	UniRef90_D4P7L8	71.6	0.0000000000000142	Gp107	N/A
eggNOG-mapper	UHGV-1970253_16	428125.CLOLEP_01401	75.1	1.23e-16	N/A	N/A
PHROG	UHGV-1970253_17	phrog_4291	1179.0	0	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1970253_17	UniRef90_A0A5B8WG76	793.0	0	Helix-turn-helix DNA binding domain protein	N/A
eggNOG-mapper	UHGV-1970253_17	691965.D4P7L7_9CAUD	782.0	0	N/A	N/A
Pfam	UHGV-1970253_17	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
Pfam	UHGV-1970253_17	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-1970253_17	PF05183	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_18	phrog_3953	165.7	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1970253_18	UniRef90_A0A075EI90	194.0	0	Gp105	N/A
eggNOG-mapper	UHGV-1970253_18	742740.HMPREF9474_02279	182.0	0	N/A	N/A
Pfam	UHGV-1970253_18	PF10926	N/A	N/A	N/A	DUF2800
UniRef90	UHGV-1970253_19	UniRef90_A0A5J6D7X3	111.0	8.88e-30	Hydrolase	N/A
eggNOG-mapper	UHGV-1970253_19	742740.HMPREF9474_02280	119.0	1.35e-33	N/A	N/A
structural_annotation	UHGV-1970253_20	PF20987	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_22	phrog_62	126.8	1.2e-37	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1970253_22	UniRef90_A0A6G5YPG1	432.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1970253_22	665950.HMPREF1025_01961	344.0	0	Helicase conserved C-terminal domain	N/A
Pfam	UHGV-1970253_22	PF00270	N/A	N/A	DEAD/DEAH box helicase	DEAD
COG	UHGV-1970253_22	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1970253_22	PF02399,MF_01821,NF038318,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_24	phrog_419	96.5	3.3e-28	N/A	unknown function
UniRef90	UHGV-1970253_24	UniRef90_UPI001C4DCDCC	91.3	7.98e-22	PGDYG domain-containing protein	N/A
eggNOG-mapper	UHGV-1970253_24	1071400.LBUCD034_0939	87.0	7.16e-21	N/A	N/A
PHROG	UHGV-1970253_33	phrog_4787	73.2	1.7e-21	single strand annealing protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1970253_33	691965.D4P7I8_9CAUD	52.4	0.00000865	N/A	N/A
structural_annotation	UHGV-1970253_33	PF21265,MF_04153	N/A	N/A	N/A	N/A
Pfam	UHGV-1970253_34	PF01503	N/A	N/A	Phosphoribosyl-ATP pyrophosphohydrolase	PRA-PH
structural_annotation	UHGV-1970253_34	PF01503,MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1970253_37	PF12857,NF041911	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_43	phrog_4210	394.7	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1970253_43	UniRef90_A0A6G6Y006	440.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-1970253_43	665956.HMPREF1032_00647	317.0	0	DNA polymerase type-B family	N/A
structural_annotation	UHGV-1970253_43	PF00136,MF_04100,NF004418,COG0417	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_46	phrog_4210	1192.2	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1970253_46	UniRef90_A0A6G5YN77	1222.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-1970253_46	428125.CLOLEP_01375	851.0	0	DNA polymerase type-B family	N/A
Pfam	UHGV-1970253_46	PF19263	N/A	N/A	N/A	DUF5906
structural_annotation	UHGV-1970253_46	PF05272,PF09250,MF_00016,NF011296,COG3378	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_47	phrog_4678	86.1	3.5e-25	N/A	unknown function
UniRef90	UHGV-1970253_47	UniRef90_UPI001E62D5A9	57.0	0.00000059	TRAP transporter TatT component family protein	N/A
eggNOG-mapper	UHGV-1970253_47	742733.HMPREF9469_05069	67.8	0.0000000000112	N/A	N/A
PHROG	UHGV-1970253_48	phrog_4695	59.5	3.3e-17	N/A	unknown function
PHROG	UHGV-1970253_49	phrog_2152	256.5	0	N/A	unknown function
UniRef90	UHGV-1970253_49	UniRef90_UPI00156DA7B3	185.0	0	N/A	N/A
eggNOG-mapper	UHGV-1970253_49	691965.D4P7I0_9CAUD	161.0	8.40779e-45	N/A	N/A
Pfam	UHGV-1970253_49	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-1970253_49	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_52	phrog_4079	183.6	0	N/A	unknown function
UniRef90	UHGV-1970253_52	UniRef90_D4P7T5	125.0	3.97e-32	Gp067	N/A
eggNOG-mapper	UHGV-1970253_52	691965.D4P7H8_9CAUD	114.0	1.98e-28	N/A	N/A
PHROG	UHGV-1970253_53	phrog_4282	46.3	0.00000000000022	N/A	unknown function
PHROG	UHGV-1970253_55	phrog_2152	200.9	0	N/A	unknown function
UniRef90	UHGV-1970253_55	UniRef90_A0A5P8D8C3	155.0	4.59626e-43	Membrane protein	N/A
eggNOG-mapper	UHGV-1970253_55	742733.HMPREF9469_05079	150.0	8.10931e-42	N/A	N/A
Pfam	UHGV-1970253_55	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-1970253_55	PF19880	N/A	N/A	N/A	N/A
KOfam	UHGV-1970253_57	K00942	78.6	9.6e-23	gmk, GUK1; guanylate kinase [EC:2.7.4.8]	N/A
PHROG	UHGV-1970253_57	phrog_1815	110.8	1.4e-32	guanylate kinase	other
UniRef90	UHGV-1970253_57	UniRef90_O52944	108.0	1.47e-25	Guanylate kinase-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1970253_57	1408311.JNJM01000009_gene2216	96.7	1.62e-21	Guanylate kinase homologues.	N/A
Pfam	UHGV-1970253_57	PF13238	N/A	N/A	AAA domain	AAA_18
COG	UHGV-1970253_57	COG0194	N/A	N/A	Guanylate kinase	N/A
PHROG	UHGV-1970253_62	phrog_881	66.2	2.9e-19	holin	lysis
UniRef90	UHGV-1970253_62	UniRef90_A0A4Q7P349	67.8	0.000000000000475	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-1970253_62	742740.HMPREF9474_02251	73.2	6.46e-16	Putative phage holin Dp-1	N/A
Pfam	UHGV-1970253_62	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1970253_62	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_63	phrog_4105	92.2	3.7e-27	N/A	unknown function
UniRef90	UHGV-1970253_63	UniRef90_A0A8D9UHA9	89.7	5.24e-21	Holin protein	N/A
eggNOG-mapper	UHGV-1970253_63	742733.HMPREF9469_05011	102.0	1.42e-26	N/A	N/A
PHROG	UHGV-1970253_65	phrog_20016	75.4	5.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-1970253_65	397290.C810_05214	67.8	0.00000000000218	N/A	N/A
structural_annotation	UHGV-1970253_65	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_66	phrog_16490	127.3	2.2e-38	N/A	unknown function
eggNOG-mapper	UHGV-1970253_66	476272.RUMHYD_01954	105.0	9.05e-25	N/A	N/A
eggNOG-mapper	UHGV-1970253_68	658655.HMPREF0988_00919	57.4	0.0000000328	N/A	N/A
UniRef90	UHGV-1970253_70	UniRef90_A0A7Y0HYI8	184.0	0	Transcriptional regulator	N/A
PHROG	UHGV-1970253_71	phrog_3558	252.6	0	tail protein	tail
eggNOG-mapper	UHGV-1970253_71	78346.BRUM_0385	139.0	1.96e-30	cellulase activity	N/A
Pfam	UHGV-1970253_71	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1970253_71	COG4372	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1970253_72	NF012201	N/A	N/A	N/A	N/A
UniRef90	UHGV-1970253_73	UniRef90_A0A374UNT1	89.4	1.6e-17	MtfA protein	N/A
eggNOG-mapper	UHGV-1970253_73	1203602.HMPREF1527_01081	106.0	3.92e-24	N/A	N/A
structural_annotation	UHGV-1970253_73	PF20195,PF21621,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_74	phrog_4372	934.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1970253_74	UniRef90_UPI00065A3499	1000.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-1970253_74	478749.BRYFOR_08513	748.0	0	Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-1970253_74	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1970253_74	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1970253_74	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1970253_74	PF20155,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-1970253_75	UniRef90_A0A5B8WHN7	168.0	0	Minor tail protein	N/A
eggNOG-mapper	UHGV-1970253_75	428125.CLOLEP_01421	154.0	0	N/A	N/A
structural_annotation	UHGV-1970253_75	TIGR01725	N/A	N/A	N/A	N/A
KOfam	UHGV-1970253_76	K07273	156.2	0	acm; lysozyme	N/A
PHROG	UHGV-1970253_76	phrog_291	162.1	0	endolysin	lysis
UniRef90	UHGV-1970253_76	UniRef90_UPI001CFF4E3C	353.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1970253_76	521003.COLINT_02363	338.0	0	CW_7 repeat	N/A
Pfam	UHGV-1970253_76	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1970253_76	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-1970253_76	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1970253_76	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1970253_76	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_77	phrog_4338	189.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1970253_77	1537917.JU82_06570	145.0	1.18003e-41	N/A	N/A
PHROG	UHGV-1970253_78	phrog_2645	334.3	0	major tail protein	tail
UniRef90	UHGV-1970253_78	UniRef90_A0A2L1IW72	267.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-1970253_78	742733.HMPREF9469_05026	256.0	0	N/A	N/A
structural_annotation	UHGV-1970253_78	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1970253_79	UniRef90_D4P7D8	94.4	1.52e-23	Structural protein	N/A
eggNOG-mapper	UHGV-1970253_79	691965.D4P7D8_9CAUD	94.4	2.54e-24	N/A	N/A
structural_annotation	UHGV-1970253_79	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1970253_81	phrog_11541	63.4	2e-18	N/A	unknown function
UniRef90	UHGV-1970253_81	UniRef90_A0A2U2RTT4	839.0	0	SGNH_hydro domain-containing protein	N/A
eggNOG-mapper	UHGV-1970253_81	877415.JNJQ01000011_gene667	116.0	5.66e-27	GDSL-like Lipase/Acylhydrolase family	N/A
Pfam	UHGV-1970253_81	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
KOfam	UHGV-1970253_82	K20846	45.3	0.00000000000075	cgkA; kappa-carrageenase [EC:3.2.1.83]	N/A
PHROG	UHGV-1970253_82	phrog_215	81.3	1.8e-23	structural protein with Ig domain	head and packaging
UniRef90	UHGV-1970253_82	UniRef90_UPI00197A8E89	58.9	0.0000000295	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1970253_82	760568.Desku_0263	56.2	0.000000381	S-layer homology domain	N/A
Pfam	UHGV-1970253_82	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-1970253_82	COG5492	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1970253	Yes	55,406	53	100	1
UHGV-0132738	No	53,557	52	100	1
UHGV-0385060	No	53,557	52	100	1
UHGV-1366531	No	53,557	52	100	1
UHGV-0187581	No	52,570	53	100	1
UHGV-1360200	No	52,570	53	100	1
UHGV-1972008	No	53,768	52	98	1
UHGV-2191457	No	53,737	52	98	1
UHGV-1458838	No	51,706	52	95	1
UHGV-0075265	No	46,533	53	85	1
UHGV-1481554	No	46,533	53	85	1