vOTU vOTU-001928

vOTU: vOTU-001928

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-001928
Number of genomes	27
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp900552475
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01321 → vGENUS-05942 → vSUBGEN-19540 → vOTU-001928
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp900552475
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1354010
Biosample ID	SAMEA3665090
Genome length (bp)	41,946 bps
CheckV completeness	100.00% (Complete)
CDS count	54
CDS density	89.84%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp900552475	Total connections	29	Host agreement	96.55
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp900552475	Total connections	29	Host agreement	93.1

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1354010_1	K07729	61.8	1.4e-17	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1354010_1	phrog_8	56.6	6.6e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1354010_1	UniRef90_R5AVU4	79.0	3.93e-18	CI-like repressor	N/A
eggNOG-mapper	UHGV-1354010_1	521460.Athe_2435	56.2	0.00000000174	PFAM helix-turn-helix domain protein	N/A
PADLOC	UHGV-1354010_1	retron_type_VI_hth_cluster2_1	44.7	0.0000000000036	N/A	Retron
Pfam	UHGV-1354010_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1354010_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1354010_1	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1354010_3	K07339	59.6	5e-17	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-1354010_3	phrog_353	59.1	5.4e-17	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1354010_3	UniRef90_UPI00130EBAF4	107.0	3.01e-29	type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-1354010_3	1121887.AUDK01000033_gene1450	79.7	4.97e-19	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-1354010_3	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
structural_annotation	UHGV-1354010_3	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-1354010_4	K18843	73.0	5.5e-21	hicB; antitoxin HicB	N/A
PHROG	UHGV-1354010_4	phrog_497	81.6	1.3e-23	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1354010_4	UniRef90_A0A810Q7W6	220.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-1354010_4	138119.DSY3841	159.0	0	PFAM Uncharacterised protein family UPF0150	N/A
Pfam	UHGV-1354010_4	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-1354010_4	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-1354010_4	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-1354010_6	K23779	43.7	0.0000000000058	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-1354010_6	phrog_1373	46.1	0.0000000000008	transcriptional regulator	transcription regulation
UniRef90	UHGV-1354010_6	UniRef90_UPI00051ABD2F	96.7	3.29e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1354010_6	1280688.AUJB01000009_gene1936	61.2	0.000000000352	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1354010_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1354010_6	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-1354010_7	PF05973,TIGR02683,COG4683	N/A	N/A	N/A	N/A
KOfam	UHGV-1354010_8	K22300	64.0	3.3e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1354010_8	phrog_4	49.2	0.00000000000013	transcriptional repressor	transcription regulation
UniRef90	UHGV-1354010_8	UniRef90_A0A1C6CFH8	135.0	1.14e-38	Putative zinc finger/helix-turn-helix protein, YgiT family	N/A
eggNOG-mapper	UHGV-1354010_8	903814.ELI_1263	130.0	2.9e-37	Helix-turn-helix domain	N/A
Pfam	UHGV-1354010_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1354010_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1354010_8	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354010_9	PF06034	N/A	N/A	N/A	N/A
PHROG	UHGV-1354010_16	phrog_5663	66.4	1.7e-19	N/A	unknown function
UniRef90	UHGV-1354010_16	UniRef90_UPI001EDDD6D5	67.4	0.000000000114	N/A	N/A
structural_annotation	UHGV-1354010_16	PF10386	N/A	N/A	N/A	N/A
PHROG	UHGV-1354010_17	phrog_5079	72.1	5.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-1354010_17	1120978.KB894083_gene926	65.1	0.000000000000272	N/A	N/A
PHROG	UHGV-1354010_19	phrog_7566	98.3	3.8e-29	N/A	unknown function
UniRef90	UHGV-1354010_19	UniRef90_A0A8D9UHC0	105.0	3.9e-27	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1354010_19	693746.OBV_24070	103.0	4.83e-27	N/A	N/A
PHROG	UHGV-1354010_25	phrog_36399	92.1	5.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-1354010_25	1226322.HMPREF1545_00099	84.3	1.26e-19	N/A	N/A
PHROG	UHGV-1354010_26	phrog_8470	259.2	0	N/A	unknown function
UniRef90	UHGV-1354010_26	UniRef90_UPI0019580896	404.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1354010_26	1226322.HMPREF1545_00100	394.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1354010_26	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1354010_26	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1354010_27	phrog_15609	224.0	0	N/A	unknown function
UniRef90	UHGV-1354010_27	UniRef90_UPI001C12751D	159.0	9.12245e-43	N/A	N/A
eggNOG-mapper	UHGV-1354010_27	1501230.ET33_21155	154.0	1.62004e-41	N/A	N/A
Pfam	UHGV-1354010_27	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-1354010_27	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-1354010_27	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1354010_29	phrog_3136	123.6	8e-37	N/A	unknown function
UniRef90	UHGV-1354010_29	UniRef90_A0A6N7TMC2	112.0	6.68e-28	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1354010_29	1007096.BAGW01000031_gene120	60.5	0.0000000188	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1354010_29	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1354010_29	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1354010_30	phrog_5781	91.5	8.9e-27	N/A	unknown function
UniRef90	UHGV-1354010_30	UniRef90_A0A2V2GDQ1	107.0	3.06e-28	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-1354010_30	573061.Clocel_3558	101.0	1.3e-26	N/A	N/A
Pfam	UHGV-1354010_30	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-1354010_30	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-1354010_30	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
Pfam	UHGV-1354010_32	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
PHROG	UHGV-1354010_33	phrog_3584	148.3	4.34403e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1354010_33	693746.OBV_25240	97.4	1.83e-21	N/A	N/A
structural_annotation	UHGV-1354010_33	PF01446,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-1354010_35	UniRef90_A0A8D9PDT2	128.0	1.16e-35	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-1354010_35	428125.CLOLEP_01805	97.8	2.73e-24	N/A	N/A
Pfam	UHGV-1354010_35	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-1354010_35	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-1354010_36	K06909	135.9	4.00001e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1354010_36	phrog_979	138.8	1.19951e-42	terminase large subunit	head and packaging
UniRef90	UHGV-1354010_36	UniRef90_A0A810Q5R0	608.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1354010_36	1410650.JHWL01000003_gene2834	576.0	0	N/A	N/A
Pfam	UHGV-1354010_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1354010_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1354010_36	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1354010_37	phrog_156	316.8	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1354010_37	1410650.JHWL01000003_gene2833	550.0	0	N/A	N/A
structural_annotation	UHGV-1354010_37	PF16510,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1354010_38	phrog_4478	41.2	0.000000000019	peptidase	other
Pfam	UHGV-1354010_38	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-1354010_38	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1354010_39	phrog_13908	166.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1354010_39	748224.HMPREF9436_02546	57.8	0.00000223	Cysteine protease Prp	N/A
COG	UHGV-1354010_39	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1354010_40	phrog_1357	204.5	0	major head protein	head and packaging
UniRef90	UHGV-1354010_40	UniRef90_A0A2V2CFL5	580.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1354010_40	1410650.JHWL01000003_gene2830	265.0	0	N/A	N/A
Pfam	UHGV-1354010_40	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1354010_40	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1354010_40	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1354010_42	phrog_12105	104.4	7.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-1354010_42	1519439.JPJG01000060_gene1891	88.2	7.62e-21	N/A	N/A
PHROG	UHGV-1354010_43	phrog_511	221.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1354010_43	1410650.JHWL01000003_gene2827	338.0	0	N/A	N/A
structural_annotation	UHGV-1354010_43	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1354010_44	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-1354010_45	phrog_372	268.8	0	tail protein	tail
UniRef90	UHGV-1354010_45	UniRef90_A0A3N0HXV0	258.0	0	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-1354010_45	658655.HMPREF0988_00525	215.0	0	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-1354010_45	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1354010_45	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1354010_45	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-1354010_46	phrog_2649	67.0	2e-21	endolysin	lysis
UniRef90	UHGV-1354010_46	UniRef90_A0A1Q6JKP1	190.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1354010_46	1410650.JHWL01000003_gene2815	136.0	5.97e-33	N/A	N/A
Pfam	UHGV-1354010_46	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
PHROG	UHGV-1354010_47	phrog_22978	500.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1354010_47	1410650.JHWL01000003_gene2814	362.0	0	N/A	N/A
Pfam	UHGV-1354010_47	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-1354010_48	phrog_36767	73.6	1.8e-21	N/A	unknown function
UniRef90	UHGV-1354010_48	UniRef90_UPI00067E7E25	87.8	4.47e-21	N/A	N/A
eggNOG-mapper	UHGV-1354010_48	649747.HMPREF0083_01019	49.7	0.000000889	N/A	N/A
PHROG	UHGV-1354010_51	phrog_130	151.4	5.60519e-45	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1354010_51	UniRef90_A0A1Y4IIP0	149.0	2.06001e-40	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1354010_51	1507.HMPREF0262_01720	144.0	1.67e-39	Phage antirepressor protein	N/A
Pfam	UHGV-1354010_51	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1354010_51	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1354010_51	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1354010_52	phrog_199	80.7	1.6e-23	holin	lysis
UniRef90	UHGV-1354010_52	UniRef90_UPI001BEFC888	217.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-1354010_52	1160721.RBI_I01565	145.0	1.58066e-42	Bacteriophage holin family	N/A
Pfam	UHGV-1354010_52	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1354010_52	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1354010_52	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1354010_52	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1354010_53	K01446	83.3	2e-24	PGRP; peptidoglycan recognition protein	N/A
PHROG	UHGV-1354010_53	phrog_1493	152.5	0	endolysin	lysis
UniRef90	UHGV-1354010_53	UniRef90_A0A350TLR9	204.0	0	Peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1354010_53	1504823.CCMM01000008_gene1019	181.0	0	Ami_2	N/A
Pfam	UHGV-1354010_53	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1354010_53	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1354010_53	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1354010_53	PF01510,PF01471,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
KOfam	UHGV-1354010_54	K14059	216.0	0	int; integrase	N/A
PHROG	UHGV-1354010_54	phrog_1	189.9	0	integrase	integration and excision
UniRef90	UHGV-1354010_54	UniRef90_UPI001C124E9B	442.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1354010_54	1226322.HMPREF1545_00144	305.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1354010_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1354010_54	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1354010_54	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1354010	Yes	41,946	62	100	1
UHGV-0162164	No	41,491	62	100	1
UHGV-1367025	No	41,056	63	100	1
UHGV-0273461	No	39,259	63	100	1
UHGV-0014079	No	42,344	62	100	1
UHGV-0017230	No	41,946	62	100	1
UHGV-1474008	No	41,541	63	99	1
UHGV-0014474	No	41,078	62	98	1
UHGV-0001179	No	36,714	63	88	1
UHGV-1421041	No	35,723	63	85	1
UHGV-1435937	No	28,860	63	69	1
UHGV-0189165	No	28,163	62	67	1
UHGV-0040912	No	26,233	63	63	1
UHGV-0095391	No	26,201	63	62	1
UHGV-1324225	No	21,401	64	51	1
UHGV-0115094	No	20,400	65	49	1
UHGV-1774119	No	17,297	64	41	1
UHGV-1703982	No	17,271	64	41	1
UHGV-2104988	No	15,143	61	36	1
UHGV-0132422	No	14,751	64	35	1
UHGV-1966353	No	13,483	65	32	1
UHGV-1804134	No	12,987	65	31	1
UHGV-2097734	No	11,728	60	28	1
UHGV-1660900	No	11,045	65	26	1
UHGV-1969077	No	10,064	59	24	1
UHGV-1656889	No	10,150	64	24	1
UHGV-1670847	No	10,052	64	24	1