vOTU vOTU-002062

vOTU: vOTU-002062

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-002062
Number of genomes	11
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00060 → vGENUS-00393 → vSUBGEN-21565 → vOTU-002062
Host lineage	Bacteria → Proteobacteria
Host range breadth	Phylum
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1358715
Biosample ID	SAMN03418268
Genome length (bp)	42,396 bps
CheckV completeness	100.00% (Complete)
CDS count	57
CDS density	92.12%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Proteobacteria	Total connections	67	Host agreement	62.69
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ERR7745291_bin.289	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1358715_3	K18830	50.5	0.000000000000045	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1358715_3	phrog_8	43.8	0.0000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-1358715_3	UniRef90_A0A1C5N467	117.0	2.09e-31	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-1358715_3	411471.SUBVAR_05818	102.0	1.97e-26	sequence-specific DNA binding	N/A
Pfam	UHGV-1358715_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1358715_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1358715_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1358715_6	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1358715_7	K14059	130.2	3e-38	int; integrase	N/A
PHROG	UHGV-1358715_7	phrog_1	141.3	8.50028e-42	integrase	integration and excision
UniRef90	UHGV-1358715_7	UniRef90_A0A2Z4QB94	310.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1358715_7	641112.ACOK01000111_gene1860	113.0	8.29e-26	Phage integrase family	N/A
Pfam	UHGV-1358715_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1358715_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1358715_7	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1358715_8	UniRef90_A0A8F0WD75	67.4	0.0000000000819	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1358715_8	1378168.N510_03079	71.6	0.000000000000939	N/A	N/A
PHROG	UHGV-1358715_11	phrog_36767	61.4	1.2e-17	N/A	unknown function
UniRef90	UHGV-1358715_11	UniRef90_UPI00067E7E25	79.3	1.16e-17	N/A	N/A
structural_annotation	UHGV-1358715_12	PF18812,COG2929	N/A	N/A	N/A	N/A
UniRef90	UHGV-1358715_14	UniRef90_A0A843IZ65	62.8	0.0000000000214	Sigma70_r4 domain-containing protein	N/A
Pfam	UHGV-1358715_14	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-1358715_14	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1358715_14	PF04545,MF_00245,TIGR02985,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1358715_15	K11062	108.4	6.7e-32	entD; probable enterotoxin D	N/A
PHROG	UHGV-1358715_15	phrog_1794	108.1	1.1e-31	amidase	lysis
UniRef90	UHGV-1358715_15	UniRef90_A0A3D4VSU2	160.0	1.4013e-45	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1358715_15	411470.RUMGNA_02087	147.0	6.51e-39	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1358715_15	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1358715_15	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1358715_15	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1358715_16	phrog_13256	61.3	1e-17	N/A	unknown function
eggNOG-mapper	UHGV-1358715_16	428125.CLOLEP_01907	75.9	1.98e-17	N/A	N/A
PHROG	UHGV-1358715_18	phrog_937	48.3	0.00000000000018	hemolysin	other
eggNOG-mapper	UHGV-1358715_18	1519439.JPJG01000023_gene533	70.9	0.0000000000000296	N/A	N/A
Pfam	UHGV-1358715_19	PF00404	N/A	N/A	Dockerin type I domain	Dockerin_1
PHROG	UHGV-1358715_21	phrog_5073	66.0	5.9e-19	tail fiber protein	tail
UniRef90	UHGV-1358715_21	UniRef90_R6LGA5	82.8	0.000000000000844	SGNH_hydro domain-containing protein	N/A
Pfam	UHGV-1358715_21	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-1358715_21	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-1358715_21	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
eggNOG-mapper	UHGV-1358715_22	1232443.BAIA02000078_gene14	61.2	0.0000000807	nuclear chromosome segregation	N/A
COG	UHGV-1358715_22	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
KOfam	UHGV-1358715_23	K16617	40.7	0.000000000014	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-1358715_23	phrog_819	42.9	1.8e-16	tail protein	tail
Pfam	UHGV-1358715_23	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1358715_23	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1358715_24	PF18962,NF011773	N/A	N/A	N/A	N/A
PHROG	UHGV-1358715_25	phrog_22978	80.6	1.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-1358715_25	1519439.JPJG01000060_gene1905	708.0	0	N/A	N/A
Pfam	UHGV-1358715_25	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
UniRef90	UHGV-1358715_26	UniRef90_R5DCX9	192.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1358715_26	1410650.JHWL01000003_gene2815	130.0	3.14e-31	N/A	N/A
eggNOG-mapper	UHGV-1358715_28	537007.BLAHAN_05255	67.0	0.00000000525	N/A	N/A
PHROG	UHGV-1358715_29	phrog_12105	115.8	2.3e-34	N/A	unknown function
PHROG	UHGV-1358715_30	phrog_15239	49.2	0.000000000000075	N/A	unknown function
PHROG	UHGV-1358715_31	phrog_1357	240.1	0	major head protein	head and packaging
UniRef90	UHGV-1358715_31	UniRef90_A0A2V2CFL5	394.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1358715_31	1410650.JHWL01000003_gene2830	287.0	0	N/A	N/A
Pfam	UHGV-1358715_31	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1358715_31	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1358715_31	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1358715_32	phrog_13908	189.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1358715_32	1410650.JHWL01000003_gene2831	125.0	3.37e-31	N/A	N/A
PHROG	UHGV-1358715_33	phrog_156	305.4	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1358715_33	1410650.JHWL01000003_gene2833	534.0	0	N/A	N/A
structural_annotation	UHGV-1358715_33	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1358715_34	phrog_511	208.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1358715_34	1410650.JHWL01000003_gene2827	324.0	0	N/A	N/A
structural_annotation	UHGV-1358715_34	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1358715_35	phrog_28563	45.8	0.0000000000011	N/A	unknown function
UniRef90	UHGV-1358715_35	UniRef90_A0A7G9GB56	88.6	1.45e-21	INTEIN_C_TER domain-containing protein	N/A
NCBIFam	UHGV-1358715_35	TIGR01443.1	N/A	N/A	intein C-terminal splicing region	N/A
PHROG	UHGV-1358715_36	phrog_15471	121.8	4.6e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1358715_36	UniRef90_A0A396QEH1	191.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1358715_36	1235800.C819_00490	114.0	1.25e-29	HNH endonuclease	N/A
Pfam	UHGV-1358715_36	PF13392	N/A	N/A	HNH endonuclease	HNH_3
KOfam	UHGV-1358715_37	K06909	121.5	9.6e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1358715_37	phrog_979	121.7	6.4e-38	terminase large subunit	head and packaging
UniRef90	UHGV-1358715_37	UniRef90_A0A396QXH8	621.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-1358715_37	1410650.JHWL01000003_gene2834	538.0	0	N/A	N/A
Pfam	UHGV-1358715_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1358715_37	TIGR01445.1	N/A	N/A	intein N-terminal splicing region	N/A
COG	UHGV-1358715_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1358715_37	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1358715_38	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1358715_39	phrog_3584	112.0	5e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1358715_39	537013.CLOSTMETH_02141	72.4	0.000000000000819	N/A	N/A
structural_annotation	UHGV-1358715_39	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-1358715_40	phrog_21498	298.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1358715_40	78346.BRUM_0376	257.0	0	DNA binding	N/A
COG	UHGV-1358715_40	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1358715_40	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-1358715_45	phrog_190	114.2	1.1e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1358715_45	UniRef90_UPI0006C2AC63	122.0	8.27e-33	N/A	N/A
eggNOG-mapper	UHGV-1358715_45	693746.OBV_25250	113.0	4.39e-30	N/A	N/A
Pfam	UHGV-1358715_45	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1358715_45	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-1358715_49	K00558	157.1	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1358715_49	phrog_363	243.7	0	DNA methyltransferase	other
UniRef90	UHGV-1358715_49	UniRef90_G4KRB8	338.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1358715_49	693746.OBV_01900	338.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1358715_49	MTase_II_00058	119.0	2.2e-35	Type II methyltransferase	RM
Pfam	UHGV-1358715_49	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1358715_49	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1358715_49	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1358715_49	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1358715_52	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1358715_54	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1358715	Yes	42,396	57	100	1
UHGV-1348398	No	42,396	57	100	1
UHGV-1360259	No	42,396	57	100	1
UHGV-0195732	No	42,214	57	99	1
UHGV-0136851	No	28,404	54	67	1
UHGV-2203518	No	25,997	57	62	1
UHGV-0032447	No	24,464	59	58	1
UHGV-0138872	No	21,372	58	51	1
UHGV-1463902	No	21,372	58	51	1
UHGV-2205667	No	21,439	56	51	1
UHGV-0356339	No	14,137	60	33	1