vOTU vOTU-002220

vOTU: vOTU-002220

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-002220
Number of genomes	6
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435555
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00213 → vGENUS-00391 → vSUBGEN-28717 → vOTU-002220
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0336403
Biosample ID	N/A
Genome length (bp)	42,892 bps
CheckV completeness	100.00% (Complete)
CDS count	61
CDS density	92.32%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	102	Host agreement	70.59
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435555	Total connections	12	Host agreement	91.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0336403_1	phrog_156	126.0	2.7e-37	portal protein	head and packaging
eggNOG-mapper	UHGV-0336403_1	718252.FP2_29200	178.0	0	N/A	N/A
UniRef90	UHGV-0336403_2	UniRef90_A0A8D9PDR6	191.0	0	YsxB-like protein	N/A
Pfam	UHGV-0336403_2	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0336403_2	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0336403_3	phrog_13908	309.6	0	N/A	unknown function
UniRef90	UHGV-0336403_3	UniRef90_A0A844DRV7	120.0	2.75e-27	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0336403_3	1410650.JHWL01000003_gene2831	121.0	1.98e-29	N/A	N/A
PHROG	UHGV-0336403_4	phrog_1357	258.7	0	major head protein	head and packaging
UniRef90	UHGV-0336403_4	UniRef90_A0A8D9UH64	800.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0336403_4	1449126.JQKL01000003_gene1695	451.0	0	N/A	N/A
Pfam	UHGV-0336403_4	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0336403_4	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0336403_4	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0336403_5	phrog_15239	87.2	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0336403_5	1449126.JQKL01000003_gene1694	51.2	0.00000256	N/A	N/A
PHROG	UHGV-0336403_6	phrog_35419	45.8	0.000000000001	tail fiber protein	tail
UniRef90	UHGV-0336403_6	UniRef90_A0A8D9PDI4	358.0	0	Collagen I alpha 1	N/A
eggNOG-mapper	UHGV-0336403_6	1235793.C809_03302	64.3	0.0000000762	N/A	N/A
UniRef90	UHGV-0336403_7	UniRef90_A0A8D9UHD8	496.0	0	mRNA splicing protein	N/A
Pfam	UHGV-0336403_7	PF01344	N/A	N/A	Kelch motif	Kelch_1
structural_annotation	UHGV-0336403_7	PF14583,MF_01195,TIGR03547,COG3055	N/A	N/A	N/A	N/A
PHROG	UHGV-0336403_10	phrog_4105	104.1	7.8e-31	N/A	unknown function
UniRef90	UHGV-0336403_10	UniRef90_A0A8D9UHA9	203.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-0336403_10	411460.RUMTOR_01326	138.0	3.88006e-41	N/A	N/A
PHROG	UHGV-0336403_11	phrog_881	92.0	3e-27	holin	lysis
UniRef90	UHGV-0336403_11	UniRef90_A0A8D9PDR9	100.0	1.63e-26	Holin	N/A
eggNOG-mapper	UHGV-0336403_11	742740.HMPREF9474_02251	85.5	3.24e-21	Putative phage holin Dp-1	N/A
Pfam	UHGV-0336403_11	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0336403_11	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0336403_12	phrog_435	73.3	4.2e-21	endolysin	lysis
UniRef90	UHGV-0336403_12	UniRef90_A0A8D9PDS4	403.0	0	Cell wall hydrolase/autolysin	N/A
eggNOG-mapper	UHGV-0336403_12	1226322.HMPREF1545_01953	77.4	0.000000000000033	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0336403_12	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0336403_12	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0336403_12	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0336403_13	phrog_12105	89.1	8.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-0336403_13	1519439.JPJG01000060_gene1891	61.6	0.000000000144	N/A	N/A
PHROG	UHGV-0336403_14	phrog_511	221.2	0	internal virion protein	head and packaging
UniRef90	UHGV-0336403_14	UniRef90_A0A8D9UH72	948.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0336403_14	1226322.HMPREF1545_00785	311.0	0	N/A	N/A
structural_annotation	UHGV-0336403_14	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
UniRef90	UHGV-0336403_15	UniRef90_A0A8D9UGT1	135.0	7.65e-39	Sigma C capsid protein	N/A
eggNOG-mapper	UHGV-0336403_16	1410650.JHWL01000003_gene2815	65.5	0.00000000462	N/A	N/A
PHROG	UHGV-0336403_17	phrog_22978	904.3	0	N/A	unknown function
UniRef90	UHGV-0336403_17	UniRef90_A0A1Y4WLF7	1005.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0336403_17	1410650.JHWL01000003_gene2814	583.0	0	N/A	N/A
Pfam	UHGV-0336403_17	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
PHROG	UHGV-0336403_18	phrog_3754	94.2	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0336403_18	476272.RUMHYD_01764	162.0	0	N/A	N/A
PHROG	UHGV-0336403_19	phrog_21718	102.3	4.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-0336403_19	397290.C810_05210	70.1	0.000000000000458	N/A	N/A
PHROG	UHGV-0336403_20	phrog_22984	88.9	3e-26	N/A	unknown function
PHROG	UHGV-0336403_21	phrog_16490	158.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0336403_21	397290.C810_05212	113.0	2.67e-27	N/A	N/A
PHROG	UHGV-0336403_22	phrog_20016	189.1	0	N/A	unknown function
UniRef90	UHGV-0336403_22	UniRef90_A0A285PT46	179.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0336403_22	1226322.HMPREF1545_00077	169.0	0	N/A	N/A
structural_annotation	UHGV-0336403_22	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0336403_23	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0336403_24	K14059	170.2	0	int; integrase	N/A
PHROG	UHGV-0336403_24	phrog_1	163.8	0	integrase	integration and excision
UniRef90	UHGV-0336403_24	UniRef90_A0A174HFN7	344.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0336403_24	742738.HMPREF9460_01344	218.0	0	Phage integrase family	N/A
Pfam	UHGV-0336403_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0336403_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0336403_24	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0336403_25	UniRef90_A0A8D9UHA6	357.0	0	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0336403_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0336403_25	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0336403_25	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0336403_26	UniRef90_A0A8D9PDV2	157.0	0	DNA methyl phosphotriester repair domain protein	N/A
eggNOG-mapper	UHGV-0336403_26	1226325.HMPREF1548_05412	67.4	0.00000000000161	Peptidoglycan-binding domain 1 protein	N/A
COG	UHGV-0336403_26	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
UniRef90	UHGV-0336403_27	UniRef90_A0A8D9PDV1	146.0	9.3887e-44	Glycophorin A	N/A
KOfam	UHGV-0336403_28	K22300	62.8	6.6e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0336403_28	phrog_8	80.7	2.3e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0336403_28	UniRef90_A0A367GBC1	92.0	1.55e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0336403_28	1121335.Clst_0369	83.2	7.11e-19	helix-turn-helix	N/A
Pfam	UHGV-0336403_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0336403_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0336403_29	UniRef90_A0A843EA47	82.8	1.55e-19	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0336403_29	445974.CLORAM_02965	82.0	5.97e-20	N/A	N/A
Pfam	UHGV-0336403_29	PF20432	N/A	N/A	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
structural_annotation	UHGV-0336403_29	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0336403_30	K22300	43.2	0.0000000000079	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
Pfam	UHGV-0336403_30	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
PHROG	UHGV-0336403_33	phrog_22529	50.2	0.00000000000003	N/A	unknown function
UniRef90	UHGV-0336403_33	UniRef90_A0A8D9UHA1	301.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-0336403_33	742733.HMPREF9469_00853	63.5	0.000000000279	3D domain	N/A
Pfam	UHGV-0336403_33	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0336403_33	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0336403_33	COG3584	N/A	N/A	N/A	N/A
UniRef90	UHGV-0336403_35	UniRef90_A0A8D9UH91	313.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0336403_35	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0336403_35	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
UniRef90	UHGV-0336403_37	UniRef90_A0A6N9QJT6	182.0	0	N/A	N/A
eggNOG-mapper	UHGV-0336403_37	33035.JPJF01000135_gene5082	114.0	5.68e-29	N/A	N/A
Pfam	UHGV-0336403_37	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0336403_37	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0336403_38	UniRef90_B0PAM4	159.0	0	YqaJ domain-containing protein	N/A
Pfam	UHGV-0336403_38	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-0336403_38	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0336403_39	phrog_72	55.8	3.9e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336403_39	UniRef90_A0A8D9PDS2	345.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0336403_39	445972.ANACOL_01825	132.0	1.42e-36	N/A	N/A
structural_annotation	UHGV-0336403_39	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0336403_41	phrog_7566	96.2	1.9e-28	N/A	unknown function
UniRef90	UHGV-0336403_41	UniRef90_A0A8D9UHC0	192.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0336403_41	693746.OBV_24070	122.0	3.84e-35	N/A	N/A
KOfam	UHGV-0336403_42	K03111	146.2	3.40516e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0336403_42	phrog_44	141.7	4.30058e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336403_42	UniRef90_G4L1H2	194.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0336403_42	693746.OBV_19910	194.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0336403_42	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0336403_42	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0336403_42	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0336403_42	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0336403_42	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0336403_44	phrog_15768	95.3	1.6e-28	N/A	unknown function
UniRef90	UHGV-0336403_44	UniRef90_A0A8D9PDU3	120.0	1.56e-30	N/A	N/A
eggNOG-mapper	UHGV-0336403_44	1507.HMPREF0262_00303	79.7	0.00000000000000218	DnaD domain protein	N/A
AcrCatalog	UHGV-0336403_44	cluster_38323	84.0	1.21e-21	NA	N/A
Pfam	UHGV-0336403_44	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0336403_44	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0336403_44	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0336403_45	phrog_9804	70.6	2.4e-20	N/A	unknown function
UniRef90	UHGV-0336403_45	UniRef90_A0A8D9PDS1	262.0	0	Replisome organizer	N/A
eggNOG-mapper	UHGV-0336403_45	903814.ELI_3550	85.5	5.91e-19	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0336403_45	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0336403_45	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0336403_47	phrog_190	97.2	1.7e-28	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336403_47	UniRef90_A0A8D9PDD6	253.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0336403_47	862517.HMPREF9225_1657	73.9	0.00000000000000488	N/A	N/A
Pfam	UHGV-0336403_47	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0336403_47	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0336403_48	K00571	111.7	8.6e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0336403_48	phrog_67	105.0	1e-31	DNA methyltransferase	other
UniRef90	UHGV-0336403_48	UniRef90_A0A1C6E5W1	395.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0336403_48	749222.Nitsa_1817	370.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0336403_48	MTase_II_00157	91.1	5.8e-27	Type II methyltransferase	RM
Pfam	UHGV-0336403_48	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0336403_48	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0336403_48	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0336403_50	K00558	127.3	2.52234e-44	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0336403_50	phrog_116	155.5	0	DNA methyltransferase	other
UniRef90	UHGV-0336403_50	UniRef90_A0A1C5KYC3	318.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0336403_50	718252.FP2_16350	312.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0336403_50	oMTase_00004	150.0	0	orphan methyltransferase	RM
Pfam	UHGV-0336403_50	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0336403_50	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0336403_58	K22299	47.4	0.00000000000045	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0336403_58	phrog_8	64.7	2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0336403_58	UniRef90_A0A8D9PDC4	152.0	0	Repressor protein	N/A
eggNOG-mapper	UHGV-0336403_58	1226322.HMPREF1545_00039	79.0	1.69e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0336403_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0336403_58	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0336403_58	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0336403_59	UniRef90_A0A8D9PDT2	249.0	0	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-0336403_59	1226322.HMPREF1545_00042	138.0	2.4e-40	N/A	N/A
structural_annotation	UHGV-0336403_59	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-0336403_60	K06909	116.6	2.7e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0336403_60	phrog_979	195.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0336403_60	UniRef90_A0A8D9PDR5	1016.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-0336403_60	1321782.HMPREF1986_00343	615.0	0	N/A	N/A
Pfam	UHGV-0336403_60	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0336403_60	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0336403_60	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0336403_61	phrog_156	177.2	0	portal protein	head and packaging
UniRef90	UHGV-0336403_61	UniRef90_A0A8D9UH10	792.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0336403_61	748224.HMPREF9436_01396	375.0	0	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0336403	Yes	42,892	57	100	1
UHGV-0163231	No	42,892	57	100	1
UHGV-0202255	No	42,892	57	100	1
UHGV-1392614	No	29,586	56	69	1
UHGV-1773048	No	15,160	59	36	1
UHGV-1883116	No	11,628	59	27	1