vOTU vOTU-002462

vOTU: vOTU-002462

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-002462
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp900555735
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-00184 → vGENUS-00321 → vSUBGEN-22686 → vOTU-002462
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0017951
Biosample ID	SAMEA4765798
Genome length (bp)	41,428 bps
CheckV completeness	100.00% (Complete)
CDS count	64
CDS density	92.08%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170	Total connections	40	Host agreement	80
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp900555735	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0017951_1	phrog_954	199.9	0	DNA methyltransferase	other
UniRef90	UHGV-0017951_1	UniRef90_A0A810Q0N4	293.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0017951_1	1280698.AUJS01000007_gene1028	265.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0017951_1	MTase_II_00074	195.9	0	Type II methyltransferase	RM
Pfam	UHGV-0017951_1	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0017951_1	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
PHROG	UHGV-0017951_2	phrog_3136	132.3	1.7e-39	N/A	unknown function
UniRef90	UHGV-0017951_2	UniRef90_A0A3D0HBD2	108.0	2.8e-27	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0017951_2	1235793.C809_02645	70.1	0.00000000000225	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0017951_2	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0017951_2	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0017951_2	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0017951_3	phrog_38832	57.0	2.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0017951_3	665956.HMPREF1032_00143	55.1	0.000000459	N/A	N/A
structural_annotation	UHGV-0017951_3	PF11717,TIGR02450	N/A	N/A	N/A	N/A
Pfam	UHGV-0017951_5	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0017951_5	PF14354,NF007260	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017951_7	UniRef90_UPI0019D1E2CF	258.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0017951_7	1410632.JHWW01000006_gene695	204.0	0	N/A	N/A
Pfam	UHGV-0017951_7	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-0017951_7	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0017951_8	phrog_1770	55.8	8.9e-16	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017951_8	UniRef90_A0A832L5E4	150.0	2.24208e-43	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-0017951_8	536233.CLO_1822	144.0	8.79035e-42	N/A	N/A
structural_annotation	UHGV-0017951_8	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-0017951_11	K01520	149.9	1.82169e-44	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0017951_11	phrog_135	136.6	1.2e-40	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017951_11	UniRef90_A0A3D3Y5Q7	235.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0017951_11	887929.HMP0721_1278	142.0	5.65004e-42	dUTPase	N/A
Pfam	UHGV-0017951_11	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0017951_11	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0017951_11	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0017951_11	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017951_12	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-0017951_14	phrog_15863	160.7	0	N/A	unknown function
UniRef90	UHGV-0017951_14	UniRef90_A0A1Y3R3M0	234.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0017951_14	693746.OBV_01780	169.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0017951_14	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0017951_15	PF03869,NF010256	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017951_16	1235802.C823_02864	63.5	0.000000000000349	N/A	N/A
eggNOG-mapper	UHGV-0017951_17	1160721.RBI_I00206	52.0	0.000000518	N/A	N/A
KOfam	UHGV-0017951_20	K06909	142.3	3.99931e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0017951_20	phrog_979	124.5	1.8e-38	terminase large subunit	head and packaging
UniRef90	UHGV-0017951_20	UniRef90_G4KR97	542.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0017951_20	693746.OBV_01690	542.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0017951_20	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0017951_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0017951_20	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017951_21	693746.OBV_01730	73.6	0.00000000000000794	N/A	N/A
structural_annotation	UHGV-0017951_21	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0017951_22	phrog_14606	44.2	0.0000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0017951_22	755731.Clo1100_2435	67.8	0.000000000356	N/A	N/A
PHROG	UHGV-0017951_23	phrog_422	146.1	2.00386e-43	major head protein	head and packaging
UniRef90	UHGV-0017951_23	UniRef90_A0A6A8VJ17	318.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0017951_23	1408437.JNJN01000001_gene1710	234.0	0	N/A	N/A
Pfam	UHGV-0017951_23	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0017951_23	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017951_24	UniRef90_A0A4D7ASB8	513.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017951_24	693746.OBV_01680	503.0	0	N/A	N/A
structural_annotation	UHGV-0017951_24	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0017951_26	phrog_156	137.6	5.70006e-41	portal protein	head and packaging
eggNOG-mapper	UHGV-0017951_26	693746.OBV_01670	597.0	0	N/A	N/A
structural_annotation	UHGV-0017951_26	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017951_27	411473.RUMCAL_00420	66.6	0.00000000314	nuclear chromosome segregation	N/A
COG	UHGV-0017951_27	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
eggNOG-mapper	UHGV-0017951_30	1235797.C816_04174	135.0	9.13e-38	N/A	N/A
eggNOG-mapper	UHGV-0017951_31	693746.OBV_01600	85.9	0.00000000000000191	N/A	N/A
UniRef90	UHGV-0017951_32	UniRef90_A0A810QFN4	367.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0017951_32	1408437.JNJN01000060_gene452	380.0	0	heme binding	N/A
Pfam	UHGV-0017951_32	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
COG	UHGV-0017951_32	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
PHROG	UHGV-0017951_33	phrog_937	59.5	6.3e-17	hemolysin	other
eggNOG-mapper	UHGV-0017951_33	1519439.JPJG01000023_gene533	49.7	0.00000206	N/A	N/A
PHROG	UHGV-0017951_34	phrog_443	61.7	2e-17	holin	lysis
UniRef90	UHGV-0017951_34	UniRef90_UPI0009B98E42	94.0	5.84e-24	holin	N/A
eggNOG-mapper	UHGV-0017951_34	1235797.C816_04172	89.4	6.29e-23	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0017951_34	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0017951_34	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0017951_35	phrog_14030	138.3	4.49999e-41	N/A	unknown function
UniRef90	UHGV-0017951_35	UniRef90_R5BP16	160.0	5.60519e-45	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0017951_35	1095750.HMPREF9970_0318	155.0	2.92871e-43	Putative cell wall binding repeat	N/A
COG	UHGV-0017951_35	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-0017951_36	PF04545,MF_00245,TIGR02985,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017951_39	1378168.N510_03079	60.8	0.00000000596	N/A	N/A
KOfam	UHGV-0017951_40	K14059	156.2	0	int; integrase	N/A
PHROG	UHGV-0017951_40	phrog_1	149.8	2.10195e-44	integrase	integration and excision
UniRef90	UHGV-0017951_40	UniRef90_A0A3D2HVQ9	286.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0017951_40	903814.ELI_1938	86.7	4.6e-16	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0017951_40	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0017951_40	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0017951_40	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017951_41	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017951_43	UniRef90_A0A3C1K3F5	63.9	0.0000000000933	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0017951_43	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0017951_43	NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0017951_44	K22300	52.1	0.000000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0017951_44	phrog_8	44.9	0.0000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0017951_44	UniRef90_A0A810QCI5	70.9	0.000000000000011	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0017951_44	999425.HMPREF9186_00999	53.1	0.0000000465	Transcriptional	N/A
Pfam	UHGV-0017951_44	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0017951_44	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0017951_44	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017951_45	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0017951_46	phrog_1468	49.3	0.000000000000044	transcriptional repressor	transcription regulation
Pfam	UHGV-0017951_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0017951_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0017951_47	596152.DesU5LDRAFT_1910	92.4	1.51e-20	N/A	N/A
structural_annotation	UHGV-0017951_47	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0017951_50	phrog_4973	72.1	6.4e-21	N/A	unknown function
UniRef90	UHGV-0017951_50	UniRef90_A0A3D3Y0P8	82.8	2.37e-19	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0017951_50	1072685.IX83_07155	59.7	0.0000000000381	Helix-turn-helix domain	N/A
Pfam	UHGV-0017951_50	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0017951_50	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0017951_52	phrog_659	42.5	0.0000000000068	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017951_52	UniRef90_A0A6N9QJT6	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017951_52	33035.JPJF01000135_gene5082	134.0	1.92e-36	N/A	N/A
Pfam	UHGV-0017951_52	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0017951_52	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017951_53	UniRef90_B0PAM4	140.0	7.78e-39	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0017951_53	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0017951_54	phrog_72	71.9	7.6e-21	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017951_54	UniRef90_A0A8D9PDS2	162.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0017951_54	445972.ANACOL_01825	162.0	0	N/A	N/A
Pfam	UHGV-0017951_54	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0017951_54	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0017951_55	phrog_7370	58.9	6.9e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017951_55	UniRef90_A0A3D1LDS4	142.0	5.95972e-42	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0017951_55	1235800.C819_02254	67.0	0.000000000000722	HNH nucleases	N/A
Pfam	UHGV-0017951_55	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0017951_56	phrog_997	114.3	7.8e-34	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017951_56	UniRef90_R6MCS9	110.0	5.96e-29	N/A	N/A
eggNOG-mapper	UHGV-0017951_56	1203606.HMPREF1526_01889	144.0	6.54406e-43	replication terminator protein, phage associated	N/A
PHROG	UHGV-0017951_57	phrog_1029	151.1	5.60519e-45	N/A	unknown function
eggNOG-mapper	UHGV-0017951_57	552398.HMPREF0866_01625	132.0	3.14e-35	N/A	N/A
structural_annotation	UHGV-0017951_57	PF10065,COG5532	N/A	N/A	N/A	N/A
KOfam	UHGV-0017951_59	K03111	128.1	1e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0017951_59	phrog_44	132.7	2.6e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017951_59	UniRef90_A0A810QFR8	177.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0017951_59	693746.OBV_12860	166.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0017951_59	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0017951_59	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0017951_59	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0017951_59	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0017951_59	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0017951_60	phrog_15768	49.3	0.000000000000086	N/A	unknown function
UniRef90	UHGV-0017951_60	UniRef90_A0A7C1PUJ6	102.0	5.29e-23	N/A	N/A
COG	UHGV-0017951_60	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0017951_60	PF07120,COG3756	N/A	N/A	N/A	N/A
KOfam	UHGV-0017951_63	K00390	101.7	7.7e-30	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0017951_63	phrog_424	125.1	4.4e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0017951_63	UniRef90_UPI001D087498	419.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0017951_63	1408437.JNJN01000032_gene2312	326.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0017951_63	BrxP_00001	59.7	3.3e-18	BrxP	BREX
Pfam	UHGV-0017951_63	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0017951_63	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0017951_63	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0017951	Yes	41,428	53	100	1
UHGV-0010207	No	41,428	53	100	1
UHGV-0013135	No	41,428	53	100	1
UHGV-0022543	No	42,106	53	100	1
UHGV-0030125	No	41,278	53	100	1