vOTU vOTU-002470

vOTU: vOTU-002470

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-002470
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00118 → vSUBFAM-01094 → vGENUS-01434 → vSUBGEN-30295 → vOTU-002470
Host lineage
Host range breadth
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1370059
Biosample ID	N/A
Genome length (bp)	53,994 bps
CheckV completeness	100.00% (Complete)
CDS count	82
CDS density	89.78%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1370059_1	K01258	56.0	3.2e-24	pepT; tripeptide aminopeptidase [EC:3.4.11.4]	N/A
PHROG	UHGV-1370059_1	phrog_34186	137.9	9.3e-41	N/A	unknown function
UniRef90	UHGV-1370059_1	UniRef90_A0A1T4Y6L2	233.0	0	Peptidase family M28	N/A
eggNOG-mapper	UHGV-1370059_1	411467.BACCAP_03129	202.0	0	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls	N/A
Pfam	UHGV-1370059_1	PF04389	N/A	N/A	Peptidase family M28	Peptidase_M28
COG	UHGV-1370059_1	COG0624	N/A	N/A	Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase	N/A
structural_annotation	UHGV-1370059_1	PF05343,MF_00550,TIGR01883,COG1363	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1370059_2	742733.HMPREF9469_00925	133.0	2.53e-29	N/A	N/A
PHROG	UHGV-1370059_18	phrog_38	98.3	6.1e-29	terminase large subunit	head and packaging
UniRef90	UHGV-1370059_18	UniRef90_A0A1S9I916	71.2	0.00000000261	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1370059_18	428127.EUBDOL_01551	152.0	2.08e-38	chromosome segregation	N/A
COG	UHGV-1370059_18	COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1370059_20	phrog_64	121.9	3.7e-36	portal protein	head and packaging
UniRef90	UHGV-1370059_20	UniRef90_UPI0013EDE607	135.0	8.15e-31	phage portal protein	N/A
eggNOG-mapper	UHGV-1370059_20	1121866.AUGK01000003_gene1429	147.0	1.31e-35	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1370059_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1370059_20	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1370059_22	phrog_909	46.3	0.00000000000059	major head protein	head and packaging
UniRef90	UHGV-1370059_22	UniRef90_A0A0A8JLJ9	50.8	0.0000078	N/A	N/A
PHROG	UHGV-1370059_23	phrog_29	174.5	0	major head protein	head and packaging
UniRef90	UHGV-1370059_23	UniRef90_A0A2K9P3U0	227.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-1370059_23	1232443.BAIA02000078_gene29	202.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1370059_23	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1370059_23	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
Pfam	UHGV-1370059_25	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
PHROG	UHGV-1370059_29	phrog_158	47.0	0.00000000000045	major tail protein	tail
UniRef90	UHGV-1370059_29	UniRef90_UPI00189AB4AD	102.0	1.56e-24	phage tail protein	N/A
eggNOG-mapper	UHGV-1370059_29	1232453.BAIF02000058_gene1634	69.3	0.000000000000993	N/A	N/A
structural_annotation	UHGV-1370059_29	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1370059_32	phrog_28918	52.2	5.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-1370059_32	1121866.AUGK01000003_gene1437	96.7	1.94e-17	phage tail tape measure protein	N/A
COG	UHGV-1370059_32	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
Pfam	UHGV-1370059_33	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
structural_annotation	UHGV-1370059_33	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370059_35	PF10127,NF000181,COG3541	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1370059_39	1519439.JPJG01000060_gene1892	64.7	0.0000000789	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-1370059_39	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
Pfam	UHGV-1370059_45	PF04647	N/A	N/A	Accessory gene regulator B	AgrB
structural_annotation	UHGV-1370059_45	PF08281,NF001067,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1370059_46	phrog_4707	59.9	4.6e-17	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370059_46	UniRef90_A0A497PA09	79.3	7.84e-17	Replication protein (Fragment)	N/A
eggNOG-mapper	UHGV-1370059_46	632335.Calkr_2646	82.4	5.02e-17	DnaD domain protein	N/A
COG	UHGV-1370059_46	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1370059_46	PF03428,MF_01177,TIGR04176,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-1370059_48	phrog_21718	69.3	5.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-1370059_48	397290.C810_05210	58.9	0.00000000981	N/A	N/A
PHROG	UHGV-1370059_50	phrog_16490	90.8	1.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-1370059_50	658655.HMPREF0988_00917	122.0	4.78e-31	N/A	N/A
eggNOG-mapper	UHGV-1370059_51	658655.HMPREF0988_00916	130.0	4.45e-37	N/A	N/A
eggNOG-mapper	UHGV-1370059_52	1378168.N510_03079	59.3	0.000000104	N/A	N/A
PHROG	UHGV-1370059_59	phrog_1492	42.9	0.0000000000068	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1370059_59	945021.TEH_18310	77.4	5.89e-17	NUMOD4 motif	N/A
Pfam	UHGV-1370059_59	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
KOfam	UHGV-1370059_60	K17680	68.7	3.5e-20	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-1370059_60	phrog_32482	112.8	2.8e-34	PhoH-like phosphate starvation-inducible	other
UniRef90	UHGV-1370059_60	UniRef90_A0A0A0RLS5	133.0	3.24e-29	Putative phosphate starvation-inducible protein	N/A
eggNOG-mapper	UHGV-1370059_60	1560342.A0A0A0RLS5_9CAUD	133.0	5.43e-30	PhoH-like protein	N/A
eggNOG-mapper	UHGV-1370059_63	1341157.RF007C_04375	51.6	0.00000981	N/A	N/A
Pfam	UHGV-1370059_63	PF13651	N/A	N/A	Adenine-specific methyltransferase EcoRI	EcoRI_methylase
structural_annotation	UHGV-1370059_63	PF13651,MF_00607,NF011489,COG2263	N/A	N/A	N/A	N/A
KOfam	UHGV-1370059_64	K07319	160.3	0	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1370059_64	phrog_498	94.5	1.2e-27	DNA methyltransferase	other
UniRef90	UHGV-1370059_64	UniRef90_A0A6J5S4V7	145.0	9.79e-38	Putative methylase	N/A
eggNOG-mapper	UHGV-1370059_64	1382306.JNIM01000001_gene819	132.0	2.21e-35	DNA methylase	N/A
PADLOC	UHGV-1370059_64	MTase_II_00014	147.8	1.09301e-43	Type II methyltransferase	RM
Pfam	UHGV-1370059_64	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1370059_64	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1370059_64	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1370059_66	phrog_4707	81.0	1.8e-23	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370059_66	UniRef90_A0A843HGH8	94.4	1.22e-19	Conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1370059_66	1321774.HMPREF9108_00412	128.0	7.52e-33	N/A	N/A
Pfam	UHGV-1370059_66	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1370059_66	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1370059_66	PF19481,TIGR04176,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370059_67	UniRef90_A0A412EKK8	82.4	1.58e-17	HNHc domain-containing protein	N/A
Pfam	UHGV-1370059_67	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1370059_67	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-1370059_69	phrog_3490	89.5	3.2e-26	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370059_69	UniRef90_UPI001D0995BC	83.2	6.08e-17	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1370059_69	887325.HMPREF0381_0094	64.3	0.000000000143	N/A	N/A
structural_annotation	UHGV-1370059_69	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-1370059_71	phrog_10048	84.4	1.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-1370059_71	1111134.HMPREF1253_1200	114.0	5.53e-28	N/A	N/A
structural_annotation	UHGV-1370059_71	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-1370059_72	phrog_298	107.4	6e-32	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370059_72	UniRef90_A0A6J5LGN0	68.6	0.000000000201	PD-(D/E)XK nuclease superfamily	N/A
eggNOG-mapper	UHGV-1370059_72	1305732.JAGG01000001_gene1576	66.2	0.000000000233	PD-(D/E)XK nuclease superfamily	N/A
COG	UHGV-1370059_72	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1370059_72	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370059_77	PF14173	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1370059_82	1287476.HMPREF1651_10420	57.4	0.0000000167	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1370059	Yes	53,994	43	100	1
UHGV-1370061	No	54,020	43	100	1
UHGV-0069139	No	53,994	43	100	1
UHGV-0381445	No	53,994	43	100	1
UHGV-0186769	No	53,977	43	100	1
UHGV-0139468	No	55,004	43	100	1