vOTU vOTU-002730

vOTU: vOTU-002730

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-002730
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00095 → vGENUS-08811 → vSUBGEN-09360 → vOTU-002730
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Limivivens
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1373084
Biosample ID	N/A
Genome length (bp)	38,917 bps
CheckV completeness	100.00% (Complete)
CDS count	49
CDS density	92.55%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Limivivens	Total connections	8	Host agreement	75
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1373084_3	1160721.RBI_I01568	53.9	0.000000557	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
COG	UHGV-1373084_3	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
PHROG	UHGV-1373084_4	phrog_16164	192.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1373084_4	742733.HMPREF9469_01804	61.2	0.0000000542	N/A	N/A
Pfam	UHGV-1373084_4	PF19789	N/A	N/A	N/A	DUF6273
PHROG	UHGV-1373084_5	phrog_6616	629.4	0	tail protein	tail
UniRef90	UHGV-1373084_5	UniRef90_A0A1C5RZB4	384.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1373084_5	1121866.AUGK01000003_gene1439	311.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1373084_5	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-1373084_5	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1373084_6	phrog_1194	73.9	1.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-1373084_6	33035.JPJF01000093_gene2242	174.0	0	N/A	N/A
structural_annotation	UHGV-1373084_6	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_7	phrog_1535	538.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1373084_7	UniRef90_A0A1C5RGR7	727.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1373084_7	33035.JPJF01000093_gene2243	758.0	0	phage tail tape measure protein	N/A
COG	UHGV-1373084_7	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1373084_7	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_8	phrog_8355	99.7	1.1e-29	N/A	unknown function
UniRef90	UHGV-1373084_8	UniRef90_UPI001D093271	98.6	5.24e-25	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-1373084_8	33035.JPJF01000093_gene2244	93.6	4.16e-24	N/A	N/A
PHROG	UHGV-1373084_9	phrog_8300	87.6	1.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-1373084_9	33035.JPJF01000093_gene2245	117.0	3.78e-33	N/A	N/A
structural_annotation	UHGV-1373084_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_10	phrog_820	113.9	9.6e-34	major tail protein	tail
eggNOG-mapper	UHGV-1373084_10	1282664.H354_06691	202.0	0	N/A	N/A
structural_annotation	UHGV-1373084_10	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_11	phrog_2595	82.2	5.2e-24	head-tail connector protein	connector
UniRef90	UHGV-1373084_11	UniRef90_UPI001C00BA9C	175.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1373084_11	483218.BACPEC_01150	118.0	2.07e-32	N/A	N/A
Pfam	UHGV-1373084_11	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1373084_11	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_12	phrog_556	64.2	2e-18	minor head protein	head and packaging
eggNOG-mapper	UHGV-1373084_12	742740.HMPREF9474_03509	189.0	0	N/A	N/A
PHROG	UHGV-1373084_13	phrog_8710	135.8	1.3e-40	N/A	unknown function
eggNOG-mapper	UHGV-1373084_13	1282664.H354_06676	144.0	3.48923e-43	N/A	N/A
structural_annotation	UHGV-1373084_13	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_14	phrog_541	83.4	2.3e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-1373084_14	33035.JPJF01000093_gene2250	209.0	0	N/A	N/A
PHROG	UHGV-1373084_15	phrog_422	274.1	0	major head protein	head and packaging
UniRef90	UHGV-1373084_15	UniRef90_A0A1Y4R5U9	571.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1373084_15	663278.Ethha_1589	391.0	0	N/A	N/A
structural_annotation	UHGV-1373084_15	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_16	phrog_2303	148.7	3.36312e-44	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1373084_16	1298920.KI911353_gene4851	192.0	0	N/A	N/A
PHROG	UHGV-1373084_18	phrog_34731	63.1	4.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-1373084_18	365659.smi_0098	69.3	0.0000000000000153	Cysteine-rich CPCC	N/A
structural_annotation	UHGV-1373084_18	PF02699,MF_00369,TIGR00739,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_19	phrog_581	251.5	0	minor head protein	head and packaging
UniRef90	UHGV-1373084_19	UniRef90_A0A373A8K2	601.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1373084_19	33035.JPJF01000093_gene2255	537.0	0	N/A	N/A
Pfam	UHGV-1373084_19	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1373084_19	PF21814	N/A	N/A	N/A	DUF6883
COG	UHGV-1373084_19	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-1373084_19	PF06152,PF21814	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_20	phrog_533	306.3	0	portal protein	head and packaging
UniRef90	UHGV-1373084_20	UniRef90_A0A6L8XU40	849.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1373084_20	742740.HMPREF9474_03501	686.0	0	N/A	N/A
structural_annotation	UHGV-1373084_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1373084_21	K06909	90.4	2.6e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1373084_21	phrog_2	70.0	4.7e-20	terminase large subunit	head and packaging
UniRef90	UHGV-1373084_21	UniRef90_A0A414SEW8	847.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1373084_21	742740.HMPREF9474_03500	787.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1373084_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1373084_21	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1373084_22	K07474	144.5	1.10002e-42	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1373084_22	phrog_51	159.6	0	terminase small subunit	head and packaging
UniRef90	UHGV-1373084_22	UniRef90_UPI001C0332B0	262.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-1373084_22	1304866.K413DRAFT_0812	202.0	0	Terminase small subunit	N/A
Pfam	UHGV-1373084_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1373084_22	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1373084_22	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_24	phrog_36	58.1	1.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1373084_24	UniRef90_UPI001D089637	121.0	6.07e-33	N/A	N/A
eggNOG-mapper	UHGV-1373084_24	1304866.K413DRAFT_3028	128.0	1.89e-36	N/A	N/A
structural_annotation	UHGV-1373084_24	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-1373084_25	K07729	63.8	3.1e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1373084_25	phrog_8	57.2	3.8e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1373084_25	UniRef90_UPI001B225F5C	53.9	0.00000188	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1373084_25	944547.ABLL_0900	55.5	0.000000622	PFAM helix-turn-helix domain protein	N/A
PADLOC	UHGV-1373084_25	retron_type_VI_hth_cluster2_1	47.2	0.00000000000049	N/A	Retron
Pfam	UHGV-1373084_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1373084_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-1373084_27	K14440	118.7	2.1e-35	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1373084_27	phrog_62	415.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373084_27	UniRef90_A0A1C5VQG1	836.0	0	ATP-dependent helicase HepA	N/A
eggNOG-mapper	UHGV-1373084_27	1235799.C818_04202	786.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-1373084_27	DpdE_00010	92.1	7.3e-27	DpdE	DPD
Pfam	UHGV-1373084_27	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1373084_27	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1373084_27	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1373084_27	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_28	phrog_93	67.1	2.4e-19	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373084_28	UniRef90_A0A1C5VQU2	196.0	0	VRR-NUC domain	N/A
eggNOG-mapper	UHGV-1373084_28	1235799.C818_04201	133.0	2.88e-39	VRR_NUC	N/A
Pfam	UHGV-1373084_28	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1373084_28	PF01870,MF_01490,NF002585,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_29	phrog_256	1045.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373084_29	UniRef90_A0A396QJJ4	1295.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-1373084_29	1235799.C818_04200	1178.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-1373084_29	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-1373084_29	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-1373084_29	PF05272,NF011296,NF040562,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-1373084_30	K02334	837.8	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-1373084_30	phrog_17	377.5	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373084_30	UniRef90_A0A7G5MSP4	1066.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-1373084_30	1235799.C818_04199	969.0	0	DNA polymerase A domain	N/A
Pfam	UHGV-1373084_30	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-1373084_30	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-1373084_30	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_31	phrog_112	196.3	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373084_31	UniRef90_A0A3E2VQQ5	342.0	0	N/A	N/A
eggNOG-mapper	UHGV-1373084_31	1235799.C818_04198	315.0	0	N/A	N/A
Pfam	UHGV-1373084_31	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-1373084_31	PF10991,MF_04153,NF005241	N/A	N/A	N/A	N/A
KOfam	UHGV-1373084_32	K07465	49.9	0.00000000000005	K07465; putative RecB family exonuclease	N/A
PHROG	UHGV-1373084_32	phrog_69	326.7	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373084_32	UniRef90_A0A7G5MSP0	527.0	0	N/A	N/A
eggNOG-mapper	UHGV-1373084_32	1235799.C818_04197	506.0	0	N/A	N/A
Pfam	UHGV-1373084_32	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-1373084_32	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-1373084_32	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_33	phrog_22695	100.6	1.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-1373084_33	1089548.KI783301_gene2636	71.6	0.000000000000244	N/A	N/A
KOfam	UHGV-1373084_38	K00558	191.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1373084_38	phrog_116	216.7	0	DNA methyltransferase	other
UniRef90	UHGV-1373084_38	UniRef90_A0A3E2ND03	531.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1373084_38	742740.HMPREF9474_04317	516.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1373084_38	MTase_II_00020	91.4	1.3e-30	Type II methyltransferase	RM
Pfam	UHGV-1373084_38	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1373084_38	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1373084_38	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1373084_40	K07741	202.5	0	antB; anti-repressor protein	N/A
PHROG	UHGV-1373084_40	phrog_63	169.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1373084_40	UniRef90_A0A415UM63	417.0	0	Oxidoreductase	N/A
eggNOG-mapper	UHGV-1373084_40	658655.HMPREF0988_02592	366.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-1373084_40	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1373084_40	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1373084_40	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1373084_40	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
KOfam	UHGV-1373084_43	K22300	48.6	0.00000000000016	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1373084_43	UniRef90_A0A417WXX7	203.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1373084_43	887325.HMPREF0381_0352	133.0	1.23e-38	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1373084_43	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1373084_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1373084_43	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1373084_45	411469.EUBHAL_01996	74.7	4.97e-17	N/A	N/A
PHROG	UHGV-1373084_46	phrog_10292	55.1	2e-16	N/A	unknown function
UniRef90	UHGV-1373084_46	UniRef90_A0A1C5MEJ1	155.0	0	TM2 domain	N/A
eggNOG-mapper	UHGV-1373084_46	1499689.CCNN01000007_gene1692	89.7	5.24e-21	TM2 domain	N/A
Pfam	UHGV-1373084_46	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1373084_46	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1373084_46	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
KOfam	UHGV-1373084_47	K06400	256.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1373084_47	phrog_95	282.7	0	integrase	integration and excision
UniRef90	UHGV-1373084_47	UniRef90_A7B3P5	476.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-1373084_47	658655.HMPREF0988_02600	488.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1373084_47	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1373084_47	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1373084_47	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1373084_47	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1373084_48	K01447	56.8	4.3e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1373084_48	phrog_1794	100.2	2.2e-29	amidase	lysis
UniRef90	UHGV-1373084_48	UniRef90_UPI001BC0DCCF	623.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1373084_48	411468.CLOSCI_00531	188.0	0	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-1373084_48	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1373084_48	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1373084_48	PF01510,PF19087,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
PHROG	UHGV-1373084_49	phrog_199	68.1	1e-19	holin	lysis
UniRef90	UHGV-1373084_49	UniRef90_UPI001BC71EF0	289.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-1373084_49	742723.HMPREF9477_00889	237.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1373084_49	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1373084_49	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1373084_49	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1373084_49	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1373084	Yes	38,917	48	100	1
UHGV-0194693	No	38,917	48	100	1
UHGV-0257481	No	38,917	48	100	1
UHGV-0391472	No	15,610	48	41	1