vOTU vOTU-002993

vOTU: vOTU-002993

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-002993
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00060 → vGENUS-00089 → vSUBGEN-32790 → vOTU-002993
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0113324
Biosample ID	SAMEA103958120
Genome length (bp)	42,928 bps
CheckV completeness	100.00% (Complete)
CDS count	59
CDS density	93.30%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	223	Host agreement	91.48
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170	Total connections	15	Host agreement	93.33

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-0113324_1	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
KOfam	UHGV-0113324_2	K22300	50.0	0.00000000000007	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0113324_2	phrog_2967	43.2	0.000000000007	transcriptional regulator	transcription regulation
UniRef90	UHGV-0113324_2	UniRef90_G9YR83	109.0	2.13e-28	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0113324_2	748224.HMPREF9436_01444	102.0	3.83e-26	N/A	N/A
Pfam	UHGV-0113324_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0113324_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0113324_2	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0113324_4	PF15188,NF010673	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0113324_6	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0113324_9	PF05082	N/A	N/A	N/A	N/A
KOfam	UHGV-0113324_12	K00571	122.7	4e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0113324_12	phrog_67	102.0	3.2e-30	DNA methyltransferase	other
UniRef90	UHGV-0113324_12	UniRef90_A0A2U1CFM2	416.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0113324_12	411468.CLOSCI_00299	360.0	0	DNA methylase	N/A
PADLOC	UHGV-0113324_12	MTase_II_00157	93.6	2.6e-27	Type II methyltransferase	RM
Pfam	UHGV-0113324_12	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0113324_12	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0113324_12	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0113324_14	phrog_9298	59.1	5.5e-17	radical SAM domain protein	other
UniRef90	UHGV-0113324_14	UniRef90_A0A841L4D7	305.0	0	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	N/A
eggNOG-mapper	UHGV-0113324_14	742817.HMPREF9449_01796	286.0	0	radical SAM domain protein	N/A
COG	UHGV-0113324_14	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0113324_14	PF04055,MF_01864,TIGR04072,COG0621	N/A	N/A	N/A	N/A
Pfam	UHGV-0113324_15	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0113324_16	phrog_3136	141.0	3.39955e-42	N/A	unknown function
UniRef90	UHGV-0113324_16	UniRef90_A0A329TS47	157.0	4.2039e-45	ASCH domain-containing protein	N/A
COG	UHGV-0113324_16	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0113324_16	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0113324_17	phrog_38832	64.8	1.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-0113324_17	445972.ANACOL_00165	62.0	0.00000000237	N/A	N/A
structural_annotation	UHGV-0113324_17	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0113324_25	phrog_190	96.4	3.3e-28	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0113324_25	UniRef90_UPI0006C2AC63	130.0	5.69e-36	N/A	N/A
eggNOG-mapper	UHGV-0113324_25	1226322.HMPREF1545_00295	114.0	3.25e-30	N/A	N/A
Pfam	UHGV-0113324_25	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0113324_25	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0113324_27	PF10013	N/A	N/A	N/A	N/A
PHROG	UHGV-0113324_29	phrog_2245	79.6	4.1e-23	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0113324_29	UniRef90_A0A4U9RLZ8	71.2	0.000000000000354	N/A	N/A
eggNOG-mapper	UHGV-0113324_29	1567010.A0A0A7RU90_9VIRU	66.2	0.0000000000146	protein disulfide oxidoreductase activity	N/A
structural_annotation	UHGV-0113324_29	PF08271	N/A	N/A	N/A	N/A
KOfam	UHGV-0113324_30	K00571	97.9	1.3e-28	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0113324_30	phrog_23224	69.7	1.6e-22	DNA methyltransferase	other
UniRef90	UHGV-0113324_30	UniRef90_A0A413FXK5	273.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0113324_30	1125725.HMPREF1325_1312	182.0	0	N-4 methylation of cytosine	N/A
PADLOC	UHGV-0113324_30	MTase_II_00172	111.7	9.5e-33	Type II methyltransferase	RM
Pfam	UHGV-0113324_30	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0113324_30	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0113324_30	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0113324_31	phrog_3584	118.4	6e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0113324_31	537013.CLOSTMETH_02141	77.0	0.0000000000000182	N/A	N/A
structural_annotation	UHGV-0113324_31	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0113324_32	phrog_606	68.1	1.6e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0113324_32	UniRef90_UPI001F487344	123.0	3.18e-33	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0113324_32	397290.C810_05185	124.0	4.55e-34	DNA-packaging protein gp3	N/A
Pfam	UHGV-0113324_32	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0113324_32	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0113324_33	K06909	146.7	2.20004e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0113324_33	phrog_979	134.8	3.89995e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0113324_33	UniRef90_A0A810Q5R0	643.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0113324_33	1410650.JHWL01000003_gene2834	642.0	0	N/A	N/A
Pfam	UHGV-0113324_33	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0113324_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0113324_33	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0113324_34	phrog_511	233.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0113324_34	1410650.JHWL01000003_gene2827	319.0	0	N/A	N/A
structural_annotation	UHGV-0113324_34	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0113324_35	537007.BLAHAN_05255	56.6	0.00000945	N/A	N/A
PHROG	UHGV-0113324_38	phrog_156	296.2	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0113324_38	1410650.JHWL01000003_gene2833	538.0	0	N/A	N/A
structural_annotation	UHGV-0113324_38	PF16510,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0113324_39	phrog_13908	145.2	4.49817e-43	N/A	unknown function
eggNOG-mapper	UHGV-0113324_39	1410650.JHWL01000003_gene2831	108.0	6.92e-25	N/A	N/A
PHROG	UHGV-0113324_40	phrog_1357	215.6	0	major head protein	head and packaging
UniRef90	UHGV-0113324_40	UniRef90_A0A2V2CFL5	396.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0113324_40	1410650.JHWL01000003_gene2830	273.0	0	N/A	N/A
Pfam	UHGV-0113324_40	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0113324_40	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0113324_40	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0113324_42	phrog_12105	122.5	2.3e-36	N/A	unknown function
eggNOG-mapper	UHGV-0113324_42	1519439.JPJG01000060_gene1891	70.1	0.0000000000000989	N/A	N/A
UniRef90	UHGV-0113324_43	UniRef90_R5DCX9	178.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0113324_43	1410650.JHWL01000003_gene2815	133.0	4.04e-32	N/A	N/A
PHROG	UHGV-0113324_44	phrog_22978	377.7	0	N/A	unknown function
UniRef90	UHGV-0113324_44	UniRef90_A0A3D4D8G0	628.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0113324_44	1519439.JPJG01000060_gene1905	603.0	0	N/A	N/A
Pfam	UHGV-0113324_44	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0113324_44	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
structural_annotation	UHGV-0113324_45	PF18962,NF011773	N/A	N/A	N/A	N/A
KOfam	UHGV-0113324_46	K16628	169.7	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0113324_46	phrog_819	137.7	0	tail protein	tail
eggNOG-mapper	UHGV-0113324_46	1519439.JPJG01000060_gene1892	99.8	4.91e-19	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0113324_46	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0113324_46	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
UniRef90	UHGV-0113324_47	UniRef90_R5IRZ6	351.0	0	N/A	N/A
eggNOG-mapper	UHGV-0113324_47	1519439.JPJG01000060_gene1894	231.0	0	N/A	N/A
Pfam	UHGV-0113324_47	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0113324_47	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0113324_47	PF19789,PF13620,NF033708	N/A	N/A	N/A	N/A
PHROG	UHGV-0113324_48	phrog_937	62.9	6.4e-18	hemolysin	other
eggNOG-mapper	UHGV-0113324_48	1519439.JPJG01000023_gene533	79.7	3.1e-18	N/A	N/A
PHROG	UHGV-0113324_50	phrog_918	127.2	4e-38	N/A	unknown function
UniRef90	UHGV-0113324_50	UniRef90_UPI000F79A1D5	131.0	4.69e-38	N/A	N/A
eggNOG-mapper	UHGV-0113324_50	632112.C1KFI4_9CAUD	131.0	2.49e-38	N/A	N/A
Pfam	UHGV-0113324_50	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0113324_50	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0113324_51	phrog_13256	67.2	1.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0113324_51	1226322.HMPREF1545_00132	74.3	1.18e-16	N/A	N/A
UniRef90	UHGV-0113324_52	UniRef90_A0A358M2Y7	218.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0113324_52	525254.HMPREF0072_1273	226.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0113324_52	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0113324_52	NF033743	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0113324_53	1160721.RBI_I00206	52.0	0.0000000396	N/A	N/A
structural_annotation	UHGV-0113324_53	PF10723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0113324_57	UniRef90_A0A7M1RTM1	78.2	0.00000000000000589	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0113324_57	1378168.N510_03079	71.6	0.000000000000772	N/A	N/A
KOfam	UHGV-0113324_58	K06400	244.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0113324_58	phrog_95	258.0	0	integrase	integration and excision
UniRef90	UHGV-0113324_58	UniRef90_G9YSD9	407.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0113324_58	1408437.JNJN01000002_gene1420	398.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0113324_58	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0113324_58	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0113324_58	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0113324_58	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0113324_58	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
Pfam	UHGV-0113324_59	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0113324_59	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0113324	Yes	42,928	58	100	1
UHGV-0384127	No	42,928	58	100	1
UHGV-1360407	No	42,241	58	100	1
UHGV-2148505	No	42,241	58	100	1
UHGV-1559529	No	11,230	61	27	1