vOTU vOTU-003074

vOTU: vOTU-003074

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-003074
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00150 → vSUBFAM-01673 → vGENUS-01768 → vSUBGEN-40009 → vOTU-003074
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → SFMI01 → SFMI01 sp004556155
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1371095
Biosample ID	N/A
Genome length (bp)	45,612 bps
CheckV completeness	100.00% (Complete)
CDS count	62
CDS density	91.75%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → SFMI01 → SFMI01 sp004556155	Total connections	322	Host agreement	94.41
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → SFMI01 → SFMI01 sp004556155	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1371095_4	PF18892	N/A	N/A	N/A	N/A
Pfam	UHGV-1371095_5	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
KOfam	UHGV-1371095_7	K10906	103.3	7e-36	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-1371095_7	phrog_412	246.9	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371095_7	UniRef90_A0A1C6GFL6	262.0	0	Exodeoxyribonuclease 8	N/A
eggNOG-mapper	UHGV-1371095_7	1454004.AW11_02382	180.0	0	N/A	N/A
Pfam	UHGV-1371095_7	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1371095_7	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1371095_7	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1371095_8	phrog_561	165.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371095_8	UniRef90_UPI001EE8E2AA	250.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1371095_8	861454.HMPREF9099_00346	205.0	0	N/A	N/A
Pfam	UHGV-1371095_8	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1371095_8	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1371095_9	K03111	105.3	1.1e-30	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1371095_9	phrog_44	110.8	1.7e-32	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371095_9	UniRef90_A0A3D3U8Y9	148.0	1.65353e-43	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1371095_9	469378.Ccur_02950	94.4	1e-22	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1371095_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1371095_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1371095_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1371095_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1371095_9	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1371095_10	phrog_3490	98.0	9.6e-29	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371095_10	UniRef90_A0A3D3U9X5	149.0	4.06377e-43	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1371095_10	397290.C810_05169	104.0	4.26e-26	ERCC4 domain	N/A
Pfam	UHGV-1371095_10	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1371095_10	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-1371095_12	K02316	60.5	3.1e-17	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1371095_12	phrog_11992	87.2	3e-25	N/A	unknown function
UniRef90	UHGV-1371095_12	UniRef90_A0A7G5MY72	82.8	1.61e-16	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-1371095_12	1232453.BAIF02000010_gene3339	72.8	0.000000000000147	DNA primase activity	N/A
PADLOC	UHGV-1371095_12	drt-UG29	50.6	0.000000000000019	DRT	DRT
Pfam	UHGV-1371095_12	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1371095_12	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1371095_12	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-1371095_13	phrog_8841	239.6	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371095_13	UniRef90_UPI0016512652	397.0	0	N/A	N/A
eggNOG-mapper	UHGV-1371095_13	742738.HMPREF9460_02495	243.0	0	N/A	N/A
Pfam	UHGV-1371095_13	PF14528	N/A	N/A	LAGLIDADG-like domain	LAGLIDADG_3
Pfam	UHGV-1371095_13	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1371095_13	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1371095_13	COG5519	N/A	N/A	N/A	N/A
PHROG	UHGV-1371095_16	phrog_229	74.3	2e-21	MazG-like pyrophosphatase	other
UniRef90	UHGV-1371095_16	UniRef90_U2AVE4	84.3	3.83e-19	MazG nucleotide pyrophosphohydrolase domain protein	N/A
eggNOG-mapper	UHGV-1371095_16	1226325.HMPREF1548_02959	84.3	6.42e-20	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-1371095_16	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-1371095_16	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
Pfam	UHGV-1371095_17	PF04448	N/A	N/A	N/A	DUF551
Pfam	UHGV-1371095_18	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1371095_21	phrog_757	164.3	0	DNA methyltransferase	other
UniRef90	UHGV-1371095_21	UniRef90_A0A355YQL4	294.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1371095_21	742733.HMPREF9469_01835	270.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1371095_21	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1371095_21	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1371095_24	TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1371095_26	phrog_36	69.5	6.2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1371095_26	UniRef90_UPI000496DFC6	62.8	0.00000000184	N/A	N/A
eggNOG-mapper	UHGV-1371095_26	203119.Cthe_1732	57.4	0.0000000304	sigma factor activity	N/A
Pfam	UHGV-1371095_26	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1371095_26	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1371095_26	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1371095_27	469378.Ccur_02570	66.6	0.0000000000000631	N/A	N/A
KOfam	UHGV-1371095_28	K22300	47.6	0.00000000000039	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1371095_28	UniRef90_A0A3D2GX58	72.0	0.00000000000000504	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1371095_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1371095_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1371095_28	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1371095_32	K06909	109.8	3.5e-32	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1371095_32	phrog_979	152.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1371095_32	UniRef90_UPI0004130EC4	499.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1371095_32	1121091.AUMP01000003_gene2581	499.0	0	Terminase-like family	N/A
Pfam	UHGV-1371095_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1371095_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1371095_32	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1371095_33	phrog_156	207.6	0	portal protein	head and packaging
UniRef90	UHGV-1371095_33	UniRef90_A0A6M3KBP8	60.8	0.00000516	Putative head to tail joining protein	N/A
eggNOG-mapper	UHGV-1371095_33	748224.HMPREF9436_02547	134.0	1.75e-30	N/A	N/A
structural_annotation	UHGV-1371095_33	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1371095_35	phrog_1357	209.1	0	major head protein	head and packaging
UniRef90	UHGV-1371095_35	UniRef90_UPI001CF832E1	234.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1371095_35	1507.HMPREF0262_03463	215.0	0	N/A	N/A
NCBIFam	UHGV-1371095_35	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1371095_35	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1371095_38	phrog_511	51.7	0.0000000000000069	internal virion protein	head and packaging
structural_annotation	UHGV-1371095_38	PF11134,MF_03022,NF010237,TIGR04362,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1371095_40	290402.Cbei_0924	59.3	0.00000158	alcohol dehydrogenase	N/A
Pfam	UHGV-1371095_40	PF12789	N/A	N/A	Phage tail repeat like	PTR
COG	UHGV-1371095_40	COG1063	N/A	N/A	Threonine dehydrogenase or related Zn-dependent dehydrogenase	N/A
KOfam	UHGV-1371095_42	K22519	48.4	0.00000000000014	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	N/A
PHROG	UHGV-1371095_42	phrog_2649	85.1	8e-25	endolysin	lysis
UniRef90	UHGV-1371095_42	UniRef90_A0A239QP18	81.6	0.0000000000000168	NlpC/P60 family protein	N/A
eggNOG-mapper	UHGV-1371095_42	1121422.AUMW01000009_gene3264	71.2	0.0000000000113	Papain-like cysteine protease AvrRpt2	N/A
Pfam	UHGV-1371095_42	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-1371095_42	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1371095_42	COG0768	N/A	N/A	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	N/A
structural_annotation	UHGV-1371095_42	PF01471,PF00877,TIGR02869,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1371095_43	phrog_1863	65.0	8e-19	N/A	unknown function
eggNOG-mapper	UHGV-1371095_43	78344.BIGA_0464	56.2	0.0000000358	Glycosyl hydrolases family 25	N/A
COG	UHGV-1371095_43	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
PHROG	UHGV-1371095_44	phrog_1129	78.1	7.3e-23	holin	lysis
UniRef90	UHGV-1371095_44	UniRef90_UPI001BBD0ED4	130.0	1.9e-37	Phage holin family protein	N/A
eggNOG-mapper	UHGV-1371095_44	411461.DORFOR_00721	123.0	1.17e-35	N/A	N/A
Pfam	UHGV-1371095_44	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1371095_44	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1371095_46	268407.PWYN_12490	156.0	9.09e-35	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	N/A
Pfam	UHGV-1371095_46	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-1371095_46	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-1371095_46	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
Pfam	UHGV-1371095_47	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-1371095_47	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-1371095_47	PF00196,MF_00674,TIGR02985,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1371095_51	K14059	127.5	1.9e-37	int; integrase	N/A
PHROG	UHGV-1371095_51	phrog_1	145.7	4.2039e-43	integrase	integration and excision
UniRef90	UHGV-1371095_51	UniRef90_A0A2V2FR34	363.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1371095_51	693746.OBV_43340	247.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1371095_51	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1371095_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1371095_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1371095_51	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-1371095_52	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-1371095_52	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1371095_55	K22300	58.1	2.2e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1371095_55	phrog_8	54.7	0.0000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-1371095_55	UniRef90_D9R5C5	90.9	1.22e-20	Transcriptional regulator, XRE family	N/A
eggNOG-mapper	UHGV-1371095_55	610130.Closa_0705	90.9	2.04e-21	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1371095_55	retron_type_VI_hth_cluster2_1	43.3	0.000000000011	N/A	Retron
Pfam	UHGV-1371095_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1371095_55	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1371095_55	PF12844,MF_00535,NF007257,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-1371095_62	phrog_15773	56.9	2.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-1371095_62	742735.HMPREF9467_00844	81.6	4.2e-16	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1371095	Yes	45,612	57	100	1
UHGV-1376403	No	44,812	57	100	1
UHGV-1350766	No	42,008	57	100	1
UHGV-1455178	No	45,660	57	100	1
UHGV-1448285	No	44,757	57	100	1
UHGV-1757525	No	10,837	59	25	1