Viral OTU vOTU-003080

vOTU: vOTU-003080

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-003080
Number of Genomes	21
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00317 → vGENUS-00274 → vSUBGEN-01529 → vOTU-003080
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-1373516
Biosample ID	N/A
Length	37,610 bps
CheckV Completeness	100.00% (Complete)
CDS Count	62
CDS Density	90.62%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1373516_1	phrog_33680	114.5	8.5e-34	N/A	unknown function
UniRef90	UHGV-1373516_1	UniRef90_A0A1M6L1P7	206.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1373516_1	1408415.JHXL01000001_gene400	193.0	0	phage tail tape measure protein	N/A
COG	UHGV-1373516_1	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1373516_1	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_2	phrog_37549	64.3	1.1e-23	virion structural protein	head and packaging
UniRef90	UHGV-1373516_2	UniRef90_A0A3D0W045	209.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1373516_2	1161901.I1TLF2_9CAUD	92.4	2.2e-16	N/A	N/A
structural_annotation	UHGV-1373516_2	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_3	phrog_26795	116.7	1.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-1373516_3	796940.HMPREF9628_00133	80.1	0.0000000000000534	N/A	N/A
structural_annotation	UHGV-1373516_3	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1373516_4	PF18614,MF_00085,NF003082,COG0361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1373516_5	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_6	phrog_31538	40.8	0.000000000048	N/A	unknown function
PHROG	UHGV-1373516_7	phrog_13589	166.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1373516_7	742733.HMPREF9469_05009	225.0	0	N/A	N/A
eggNOG-mapper	UHGV-1373516_8	742733.HMPREF9469_05009	63.5	0.00000000226	N/A	N/A
structural_annotation	UHGV-1373516_8	PF07210,TIGR03000	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_11	phrog_27545	87.0	2.5e-25	N/A	unknown function
UniRef90	UHGV-1373516_11	UniRef90_R6ELD6	70.9	0.00000000000072	Glycosyl hydrolase family 18 family protein	N/A
eggNOG-mapper	UHGV-1373516_11	1122971.BAME01000151_gene6566	98.6	1.31e-23	N/A	N/A
PHROG	UHGV-1373516_12	phrog_14030	166.5	0	N/A	unknown function
UniRef90	UHGV-1373516_12	UniRef90_A0A173XSJ1	194.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1373516_12	1121115.AXVN01000051_gene809	187.0	0	NLP P60 protein	N/A
Pfam	UHGV-1373516_12	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-1373516_12	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1373516_12	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1373516_12	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_13	phrog_1863	52.6	0.0000000000000032	N/A	unknown function
eggNOG-mapper	UHGV-1373516_13	1226322.HMPREF1545_04027	74.3	1.66e-16	N/A	N/A
PHROG	UHGV-1373516_14	phrog_1129	68.0	1.1e-19	holin	lysis
UniRef90	UHGV-1373516_14	UniRef90_A0A6A8VHY5	124.0	2.43e-35	Enolase	N/A
eggNOG-mapper	UHGV-1373516_14	1226322.HMPREF1545_00069	127.0	1.78e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1373516_14	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1373516_14	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1373516_16	NF010256	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1373516_18	PF20477,NF033819	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_19	phrog_22984	46.7	0.0000000000006	N/A	unknown function
structural_annotation	UHGV-1373516_21	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1373516_22	UniRef90_A0A7M1RS47	55.5	0.000000854	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1373516_22	1408437.JNJN01000043_gene801	78.2	8.67e-16	N/A	N/A
KOfam	UHGV-1373516_23	K14059	228.1	0	int; integrase	N/A
PHROG	UHGV-1373516_23	phrog_1	194.8	0	integrase	integration and excision
UniRef90	UHGV-1373516_23	UniRef90_A0A3D1VH24	304.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1373516_23	742738.HMPREF9460_04031	260.0	0	Phage integrase family	N/A
Pfam	UHGV-1373516_23	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1373516_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1373516_23	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1373516_23	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_24	phrog_4980	101.2	3.3e-31	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1373516_24	UniRef90_A0A542ZE71	57.8	0.00000591	Host cell surface-exposed lipoprotein	N/A
eggNOG-mapper	UHGV-1373516_24	1120998.AUFC01000030_gene2202	79.7	0.00000000000000571	Membrane	N/A
Pfam	UHGV-1373516_24	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-1373516_24	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
COG	UHGV-1373516_25	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1373516_25	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1373516_26	K22300	67.4	3.4e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1373516_26	phrog_8	68.8	1.1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1373516_26	UniRef90_UPI00189B8222	71.2	0.0000000000000799	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1373516_26	1499968.TCA2_3614	69.3	0.0000000000000815	Transcriptional regulator	N/A
PADLOC	UHGV-1373516_26	retron_type_VI_hth_cluster2_1	40.7	0.000000000073	N/A	Retron
Pfam	UHGV-1373516_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1373516_26	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1373516_26	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1373516_31	K22300	66.1	8.7e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1373516_31	phrog_8	52.6	0.000000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-1373516_31	UniRef90_UPI001BB47897	67.8	0.000000000000247	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1373516_31	1114965.Spaf_1853	62.0	0.0000000000266	Transcriptional	N/A
Pfam	UHGV-1373516_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1373516_31	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1373516_31	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_32	phrog_6499	116.9	1e-34	transcriptional regulator	transcription regulation
UniRef90	UHGV-1373516_32	UniRef90_A0A3D4EJF0	128.0	6.07e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1373516_32	1415774.U728_1274	105.0	3.85e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1373516_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1373516_32	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-1373516_32	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1373516_34	UniRef90_UPI001C96492F	54.3	0.000000252	excisionase family DNA-binding protein	N/A
Pfam	UHGV-1373516_34	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1373516_34	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1373516_34	PF12728,MF_01155,TIGR01764,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1373516_36	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_38	phrog_270	126.0	4e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373516_38	UniRef90_UPI001F3D92C2	183.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1373516_38	742738.HMPREF9460_00851	171.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-1373516_38	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1373516_38	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1373516_38	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-1373516_39	K02314	232.4	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1373516_39	phrog_19	206.4	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373516_39	UniRef90_A0A3D1V9Y4	278.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1373516_39	1226322.HMPREF1545_00095	209.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-1373516_39	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1373516_39	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1373516_39	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1373516_39	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-1373516_40	K03496	189.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1373516_40	phrog_164	163.3	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1373516_40	UniRef90_A0A845R968	306.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-1373516_40	742738.HMPREF9460_00854	200.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-1373516_40	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1373516_40	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1373516_40	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1373516_41	K03497	83.3	4.9e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1373516_41	phrog_27290	332.0	0	N/A	unknown function
UniRef90	UHGV-1373516_41	UniRef90_UPI0003130F10	301.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1373516_41	1007096.BAGW01000033_gene1613	301.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1373516_41	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1373516_41	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1373516_41	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1373516_48	K00571	87.9	1.3e-25	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1373516_48	phrog_67	84.1	1.5e-24	DNA methyltransferase	other
UniRef90	UHGV-1373516_48	UniRef90_UPI00055C7461	206.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1373516_48	29486.NJ56_17575	87.8	1.28e-16	DNA methylase	N/A
PADLOC	UHGV-1373516_48	MTase_II_00051	87.5	3.3e-25	Type II methyltransferase	RM
Pfam	UHGV-1373516_48	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1373516_48	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-1373516_48	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_49	phrog_3584	124.9	7.7e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1373516_49	742738.HMPREF9460_00867	128.0	2.52e-33	N/A	N/A
structural_annotation	UHGV-1373516_49	PF01446,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-1373516_50	UniRef90_R6M5E4	117.0	2.77e-32	Prophage LambdaBa04 GP54	N/A
eggNOG-mapper	UHGV-1373516_50	1235793.C809_01915	121.0	6.83e-34	HNH endonuclease	N/A
COG	UHGV-1373516_50	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1373516_51	phrog_1066	113.3	1.3e-33	N/A	unknown function
eggNOG-mapper	UHGV-1373516_51	1203606.HMPREF1526_00982	107.0	1.69e-28	N/A	N/A
structural_annotation	UHGV-1373516_51	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_52	phrog_9	402.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1373516_52	UniRef90_UPI001D07C789	792.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1373516_52	1203606.HMPREF1526_00981	756.0	0	Terminase	N/A
Pfam	UHGV-1373516_52	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1373516_52	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1373516_52	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1373516_52	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_53	phrog_12	171.0	0	portal protein	head and packaging
UniRef90	UHGV-1373516_53	UniRef90_R8W4B0	454.0	0	HK97 family phage portal protein	N/A
eggNOG-mapper	UHGV-1373516_53	1203606.HMPREF1526_00980	454.0	0	Portal protein	N/A
Pfam	UHGV-1373516_53	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1373516_53	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1373516_53	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1373516_54	K01358	133.1	3.2e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1373516_54	phrog_94	200.3	0	head maturation protease	head and packaging
UniRef90	UHGV-1373516_54	UniRef90_U4R420	258.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1373516_54	1203606.HMPREF1526_00979	217.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1373516_54	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1373516_54	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1373516_54	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_55	phrog_10	172.5	0	major head protein	head and packaging
UniRef90	UHGV-1373516_55	UniRef90_A0A3D4JZM2	357.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1373516_55	318464.IO99_13750	327.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1373516_55	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1373516_55	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1373516_55	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1373516_55	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_56	phrog_5223	55.8	6.8e-16	neck protein	connector
UniRef90	UHGV-1373516_56	UniRef90_UPI000BEC4770	61.6	0.000000000205	head-tail connector protein	N/A
eggNOG-mapper	UHGV-1373516_56	411465.PEPMIC_00737	61.2	0.0000000000499	N/A	N/A
structural_annotation	UHGV-1373516_56	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_57	phrog_1951	83.0	2.7e-24	head-tail adaptor	connector
UniRef90	UHGV-1373516_57	UniRef90_A0A890FC27	70.5	0.000000000000125	Phage head closure protein	N/A
eggNOG-mapper	UHGV-1373516_57	1121428.DESHY_20140___1	65.5	0.00000000000196	head-tail adaptor	N/A
COG	UHGV-1373516_57	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1373516_57	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1373516_58	1203606.HMPREF1526_00975	79.7	8.14e-18	N/A	N/A
structural_annotation	UHGV-1373516_58	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1373516_59	1203606.HMPREF1526_00974	89.0	1.92e-20	N/A	N/A
structural_annotation	UHGV-1373516_59	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1373516_60	phrog_88	54.2	0.000000000000002	major tail protein	tail
UniRef90	UHGV-1373516_60	UniRef90_A0A658JYC3	65.9	0.000000000718	Phage tail protein	N/A
eggNOG-mapper	UHGV-1373516_60	1195236.CTER_5106	71.2	0.00000000000128	phage major tail protein, phi13 family	N/A
COG	UHGV-1373516_60	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1373516_60	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1373516_61	PF11836	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1373516	Yes	37,610	58	100	1
UHGV-0068316	No	37,610	58	100	1
UHGV-1376580	No	37,610	58	100	1
UHGV-2015736	No	37,610	58	100	1
UHGV-0183123	No	37,592	58	100	1
UHGV-0177971	No	36,393	58	99	1
UHGV-0159431	No	33,289	57	91	1
UHGV-1558397	No	30,355	57	83	1
UHGV-0211700	No	28,266	58	77	1
UHGV-1488525	No	26,590	59	73	1
UHGV-1402064	No	25,993	59	71	1
UHGV-0020389	No	22,793	58	62	1
UHGV-1394943	No	19,223	59	53	1
UHGV-1660024	No	17,078	59	47	1
UHGV-1606028	No	16,721	57	46	1
UHGV-1755492	No	15,437	58	42	1
UHGV-0197648	No	15,433	58	42	1
UHGV-1683587	No	12,698	59	35	1
UHGV-0211754	No	12,212	59	33	1
UHGV-0052586	No	11,778	59	32	1
UHGV-1594290	No	11,778	59	32	1