vOTU vOTU-003119

vOTU: vOTU-003119

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-003119
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00751 → vGENUS-00991 → vSUBGEN-24225 → vOTU-003119
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0171732
Biosample ID	SAMN09781682
Genome length (bp)	38,998 bps
CheckV completeness	100.00% (Complete)
CDS count	50
CDS density	91.89%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	20	Host agreement	85
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0171732_1	UniRef90_A0A7M1RS47	58.9	0.0000000342	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0171732_1	1408437.JNJN01000043_gene801	53.5	0.00000123	N/A	N/A
structural_annotation	UHGV-0171732_4	PF16509,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0171732_5	phrog_199	66.7	2.8e-19	holin	lysis
UniRef90	UHGV-0171732_5	UniRef90_A0A3C0NPD5	181.0	0	Holin	N/A
eggNOG-mapper	UHGV-0171732_5	1121344.JHZO01000003_gene684	148.0	1.33123e-43	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0171732_5	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0171732_5	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0171732_5	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0171732_5	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0171732_6	phrog_14030	162.7	0	N/A	unknown function
UniRef90	UHGV-0171732_6	UniRef90_A0A316NTC6	211.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0171732_6	1321782.HMPREF1986_02283	191.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0171732_6	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0171732_6	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0171732_6	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0171732_6	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
KOfam	UHGV-0171732_8	K18454	40.0	0.00000000004	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
PHROG	UHGV-0171732_8	phrog_30034	118.2	8.4e-35	N/A	unknown function
UniRef90	UHGV-0171732_8	UniRef90_A0A2Y9CAD1	159.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0171732_8	411460.RUMTOR_02099	133.0	8.71e-37	N/A	N/A
Pfam	UHGV-0171732_8	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0171732_8	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0171732_9	phrog_355	62.5	6.3e-18	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171732_9	UniRef90_A0A396KGT7	174.0	0	N/A	N/A
eggNOG-mapper	UHGV-0171732_9	97138.C820_00250	129.0	2.28e-37	N/A	N/A
Pfam	UHGV-0171732_9	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0171732_9	PF14359,COG3613	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171732_12	PF07210,TIGR03000	N/A	N/A	N/A	N/A
PHROG	UHGV-0171732_13	phrog_25979	48.5	0.000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0171732_13	1519439.JPJG01000060_gene1892	96.7	1.31e-18	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0171732_13	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0171732_13	PF07353,COG3979	N/A	N/A	N/A	N/A
PHROG	UHGV-0171732_15	phrog_511	231.6	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0171732_15	1410650.JHWL01000003_gene2827	351.0	0	N/A	N/A
structural_annotation	UHGV-0171732_15	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0171732_16	phrog_12105	100.2	1.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-0171732_16	1519439.JPJG01000060_gene1891	68.9	0.000000000000287	N/A	N/A
PHROG	UHGV-0171732_18	phrog_1357	221.5	0	major head protein	head and packaging
UniRef90	UHGV-0171732_18	UniRef90_A0A3C0NPN1	560.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0171732_18	1410650.JHWL01000003_gene2830	263.0	0	N/A	N/A
NCBIFam	UHGV-0171732_18	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0171732_18	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0171732_19	phrog_13908	179.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0171732_19	748224.HMPREF9436_01398	57.0	0.00000365	Cysteine protease Prp	N/A
COG	UHGV-0171732_19	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0171732_20	phrog_22978	574.7	0	N/A	unknown function
UniRef90	UHGV-0171732_20	UniRef90_UPI001CF7F562	388.0	0	peptidoglycan DD-metalloendopeptidase family protein	N/A
eggNOG-mapper	UHGV-0171732_20	1410650.JHWL01000003_gene2814	358.0	0	N/A	N/A
Pfam	UHGV-0171732_20	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
Pfam	UHGV-0171732_20	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
eggNOG-mapper	UHGV-0171732_21	1410650.JHWL01000003_gene2815	129.0	1.1e-30	N/A	N/A
KOfam	UHGV-0171732_22	K07584	57.1	4e-16	N/A	N/A
PHROG	UHGV-0171732_22	phrog_4478	52.2	0.0000000000000089	peptidase	other
UniRef90	UHGV-0171732_22	UniRef90_A0A2N6APL4	50.4	0.00000946	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0171732_22	1114972.AUAW01000001_gene1462	48.5	0.00000794	Cysteine protease Prp	N/A
Pfam	UHGV-0171732_22	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0171732_22	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171732_22	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0171732_23	phrog_156	281.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0171732_23	1410650.JHWL01000003_gene2833	490.0	0	N/A	N/A
structural_annotation	UHGV-0171732_23	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0171732_24	K06909	141.3	8.89965e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0171732_24	phrog_979	140.2	1.4013e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0171732_24	UniRef90_A0A3C0NMI6	701.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0171732_24	1410650.JHWL01000003_gene2834	590.0	0	N/A	N/A
Pfam	UHGV-0171732_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0171732_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0171732_24	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171732_25	UniRef90_A0A3C0NNN3	62.0	0.00000000784	HTH psq-type domain-containing protein	N/A
PHROG	UHGV-0171732_28	phrog_3584	129.4	2.7e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0171732_28	536233.CLO_3655	64.3	0.00000000375	N/A	N/A
structural_annotation	UHGV-0171732_28	PF21578	N/A	N/A	N/A	N/A
Pfam	UHGV-0171732_30	PF17032	N/A	N/A	zinc-ribbon family	zinc_ribbon_15
PHROG	UHGV-0171732_32	phrog_799	53.6	0.0000000000000028	DNA methyltransferase	other
UniRef90	UHGV-0171732_32	UniRef90_A0A4U8T4F4	97.1	4.35e-22	Sugar-phosphate nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-0171732_32	537971.HCCG_00428	94.0	6.7e-22	N/A	N/A
structural_annotation	UHGV-0171732_32	PF05869,MF_00607,NF000468,COG0030	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171732_33	UniRef90_A0A345KQM6	97.8	4.47e-21	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0171732_33	1589750.A0A0C5AEL6_9CAUD	97.1	1.47e-21	N/A	N/A
PHROG	UHGV-0171732_34	phrog_24518	60.2	3.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0171732_34	1519439.JPJG01000077_gene922	60.5	0.0000000152	N/A	N/A
PHROG	UHGV-0171732_35	phrog_824	150.9	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0171732_35	UniRef90_A0A6N8GXS9	177.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0171732_35	665956.HMPREF1032_00132	155.0	0	VRR_NUC	N/A
Pfam	UHGV-0171732_35	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
UniRef90	UHGV-0171732_45	UniRef90_A0A2N2CNE6	76.3	6.84e-16	N/A	N/A
eggNOG-mapper	UHGV-0171732_45	742738.HMPREF9460_02806	79.0	2.77e-16	N/A	N/A
KOfam	UHGV-0171732_47	K22300	68.5	1.2e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0171732_47	phrog_4	51.3	0.00000000000003	transcriptional repressor	transcription regulation
UniRef90	UHGV-0171732_47	UniRef90_A0A1C6CFH8	116.0	4.49e-31	Putative zinc finger/helix-turn-helix protein, YgiT family	N/A
eggNOG-mapper	UHGV-0171732_47	445972.ANACOL_03315	102.0	2.16e-26	N/A	N/A
Pfam	UHGV-0171732_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0171732_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0171732_47	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0171732_48	K19167	127.5	1.4e-37	abiQ; protein AbiQ	N/A
PHROG	UHGV-0171732_48	phrog_9764	142.0	3.30006e-42	N/A	unknown function
UniRef90	UHGV-0171732_48	UniRef90_A0A845R8D8	230.0	0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-0171732_48	1519439.JPJG01000060_gene1906	174.0	0	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-0171732_48	AbiQ	157.5	0	AbiQ	Abi
Pfam	UHGV-0171732_48	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
structural_annotation	UHGV-0171732_48	PF13958	N/A	N/A	N/A	N/A
KOfam	UHGV-0171732_50	K14059	132.9	3.9e-39	int; integrase	N/A
PHROG	UHGV-0171732_50	phrog_1	143.7	1.49939e-42	integrase	integration and excision
UniRef90	UHGV-0171732_50	UniRef90_A0A2Z4QB94	277.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0171732_50	1514668.JOOA01000001_gene242	129.0	3.16e-31	Phage integrase family	N/A
Pfam	UHGV-0171732_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0171732_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0171732_50	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0171732	Yes	38,998	56	100	1
UHGV-0171748	No	38,015	56	100	1
UHGV-0208086	No	38,015	56	100	1
UHGV-0181626	No	22,344	55	59	1
UHGV-1795421	No	12,678	57	33	1