vOTU vOTU-003228

vOTU: vOTU-003228

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-003228
Number of genomes	12
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01133 → vGENUS-01313 → vSUBGEN-26907 → vOTU-003228
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1357406
Biosample ID	SAMEA3646710
Genome length (bp)	33,338 bps
CheckV completeness	100.00% (Complete)
CDS count	60
CDS density	93.33%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	11	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	14	Host agreement	78.57

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1357406_3	phrog_6900	253.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1357406_3	UniRef90_A0A373CK98	271.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-1357406_3	1216932.CM240_0625	305.0	0	tape measure	N/A
COG	UHGV-1357406_3	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1357406_3	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_4	phrog_33	86.5	4.9e-25	distal tail protein Dit	tail
UniRef90	UHGV-1357406_4	UniRef90_A0A173Z1X4	179.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1357406_4	536233.CLO_0897	73.9	0.000000000000422	tail component	N/A
Pfam	UHGV-1357406_4	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-1357406_4	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1357406_4	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_5	phrog_1067	323.4	0	minor head protein	head and packaging
UniRef90	UHGV-1357406_5	UniRef90_A0A1C6H6B4	483.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1357406_5	1123263.AUKY01000068_gene489	343.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1357406_5	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1357406_5	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1357406_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1357406_5	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_8	phrog_19280	44.5	0.00000000000075	N/A	unknown function
eggNOG-mapper	UHGV-1357406_8	1160721.RBI_I01572	73.6	0.0000000000039	N/A	N/A
structural_annotation	UHGV-1357406_8	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_9	phrog_19111	40.4	0.00000000001	N/A	unknown function
PHROG	UHGV-1357406_14	phrog_918	107.8	4.1e-32	N/A	unknown function
UniRef90	UHGV-1357406_14	UniRef90_UPI0013775FB5	115.0	6.21e-32	N/A	N/A
eggNOG-mapper	UHGV-1357406_14	1504823.CCMM01000008_gene1021	105.0	7.32e-29	N/A	N/A
Pfam	UHGV-1357406_14	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1357406_14	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_15	phrog_14030	165.6	0	N/A	unknown function
UniRef90	UHGV-1357406_15	UniRef90_A0A316NTC6	215.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1357406_15	1321782.HMPREF1986_02283	183.0	0	NlpC/P60 family	N/A
Pfam	UHGV-1357406_15	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-1357406_15	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1357406_15	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1357406_15	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_16	phrog_199	66.0	4.3e-19	holin	lysis
UniRef90	UHGV-1357406_16	UniRef90_A0A3C0NPD5	181.0	0	Holin	N/A
eggNOG-mapper	UHGV-1357406_16	1121344.JHZO01000003_gene684	148.0	1.33123e-43	toxin secretion phage lysis holin	N/A
Pfam	UHGV-1357406_16	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1357406_16	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1357406_16	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1357406_16	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1357406_17	K06400	338.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1357406_17	phrog_95	320.3	0	integrase	integration and excision
UniRef90	UHGV-1357406_17	UniRef90_A0A3A6JR24	348.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1357406_17	665956.HMPREF1032_03589	351.0	0	N/A	N/A
Pfam	UHGV-1357406_17	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1357406_17	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1357406_17	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1357406_17	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1357406_17	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357406_18	PF11950,NF008958	N/A	N/A	N/A	N/A
KOfam	UHGV-1357406_19	K15773	57.4	3.2e-16	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-1357406_19	phrog_1373	47.5	0.00000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-1357406_19	UniRef90_UPI00051ABD2F	96.7	4.82e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1357406_19	748224.HMPREF9436_03379	62.8	0.000000000162	sequence-specific DNA binding	N/A
Pfam	UHGV-1357406_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1357406_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-1357406_20	521460.Athe_2320	54.3	0.000000252	N/A	N/A
structural_annotation	UHGV-1357406_20	PF05973,TIGR02683,COG4683	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357406_21	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1357406_23	K19167	124.9	8.3e-37	abiQ; protein AbiQ	N/A
PHROG	UHGV-1357406_23	phrog_9764	140.6	8.00001e-42	N/A	unknown function
UniRef90	UHGV-1357406_23	UniRef90_A0A845R8D8	228.0	0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-1357406_23	1519439.JPJG01000060_gene1906	174.0	0	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-1357406_23	AbiQ	154.2	1.4013e-45	AbiQ	Abi
Pfam	UHGV-1357406_23	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
structural_annotation	UHGV-1357406_23	PF13958	N/A	N/A	N/A	N/A
KOfam	UHGV-1357406_24	K18830	62.2	1.2e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1357406_24	phrog_2967	49.5	0.0000000000000098	transcriptional regulator	transcription regulation
UniRef90	UHGV-1357406_24	UniRef90_A0A1Q6RKG1	115.0	1.37e-30	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1357406_24	887325.HMPREF0381_0352	103.0	5.71e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1357406_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1357406_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1357406_24	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_27	phrog_643	40.5	0.000000000006	transcriptional regulator	transcription regulation
PHROG	UHGV-1357406_37	phrog_824	151.7	1.4013e-45	N/A	unknown function
UniRef90	UHGV-1357406_37	UniRef90_A0A6N9PZV5	174.0	0	VRR-NUC domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1357406_37	665956.HMPREF1032_00132	157.0	0	VRR_NUC	N/A
Pfam	UHGV-1357406_37	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-1357406_38	phrog_24518	62.8	5.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-1357406_38	1519439.JPJG01000077_gene922	65.5	0.000000000229	N/A	N/A
KOfam	UHGV-1357406_39	K00558	40.8	2.6e-19	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1357406_39	phrog_16528	90.3	1.1e-27	DNA methyltransferase	other
UniRef90	UHGV-1357406_39	UniRef90_A0A6L5TDR3	213.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1357406_39	657322.FPR_26610	199.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-1357406_39	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1357406_39	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
Pfam	UHGV-1357406_41	PF09297	N/A	N/A	NADH pyrophosphatase zinc ribbon domain	zf-NADH-PPase
PHROG	UHGV-1357406_44	phrog_3136	131.5	3e-39	N/A	unknown function
UniRef90	UHGV-1357406_44	UniRef90_A0A329TS47	117.0	1e-29	ASCH domain-containing protein	N/A
COG	UHGV-1357406_44	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1357406_44	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_46	phrog_3584	161.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1357406_46	1226322.HMPREF1545_03841	246.0	0	N/A	N/A
structural_annotation	UHGV-1357406_46	PF01446,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1357406_48	742738.HMPREF9460_02503	88.2	6.59e-21	N/A	N/A
structural_annotation	UHGV-1357406_48	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_49	phrog_119	60.2	3.2e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357406_49	UniRef90_A0A0D8IV26	84.3	5.52e-20	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1357406_49	1415774.U728_1257	63.5	0.00000000000282	HNH nucleases	N/A
Pfam	UHGV-1357406_49	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1357406_49	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1357406_50	phrog_361	72.7	5.2e-21	terminase small subunit	head and packaging
UniRef90	UHGV-1357406_50	UniRef90_UPI0004135207	63.2	0.000000000234	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1357406_50	1033744.CAEL01000029_gene1286	73.2	0.00000000000000477	Phage terminase, small subunit	N/A
Pfam	UHGV-1357406_50	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1357406_50	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_51	phrog_9	288.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1357406_51	UniRef90_A0A2V2GQ67	958.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1357406_51	1226322.HMPREF1545_00113	848.0	0	Phage Terminase	N/A
Pfam	UHGV-1357406_51	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1357406_51	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1357406_51	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1357406_51	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_52	phrog_12	175.2	0	portal protein	head and packaging
UniRef90	UHGV-1357406_52	UniRef90_A0A0D8IVL0	531.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1357406_52	1226322.HMPREF1545_00114	452.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1357406_52	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1357406_52	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1357406_52	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1357406_52	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1357406_53	K06904	150.4	1.54143e-44	N/A	N/A
PHROG	UHGV-1357406_53	phrog_80	176.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1357406_53	UniRef90_U2SBX0	233.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-1357406_53	1226322.HMPREF1545_00115	233.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1357406_53	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1357406_53	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1357406_53	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1357406_53	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_54	phrog_10	201.7	0	major head protein	head and packaging
UniRef90	UHGV-1357406_54	UniRef90_A0A1C6H720	645.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-1357406_54	1226322.HMPREF1545_00116	594.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1357406_54	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1357406_54	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1357406_54	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1357406_54	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_55	phrog_2550	70.9	1e-20	N/A	unknown function
UniRef90	UHGV-1357406_55	UniRef90_UPI0008717716	92.0	2.07e-22	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1357406_55	1226322.HMPREF1545_00117	81.6	4.51e-19	N/A	N/A
structural_annotation	UHGV-1357406_55	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_56	phrog_19734	92.9	2.9e-27	N/A	unknown function
UniRef90	UHGV-1357406_56	UniRef90_A0A3E3E563	81.3	1.44e-17	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1357406_56	1235798.C817_04587	93.2	5.08e-23	N/A	N/A
structural_annotation	UHGV-1357406_56	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1357406_57	1232446.BAIE02000002_gene829	93.2	3.24e-23	N/A	N/A
structural_annotation	UHGV-1357406_57	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_58	phrog_5	41.7	0.000000000014	tail completion or Neck1 protein	connector
UniRef90	UHGV-1357406_58	UniRef90_A0A1C6FG30	144.0	8.90007e-41	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1357406_58	908340.HMPREF9406_2573	132.0	3.04e-37	N/A	N/A
structural_annotation	UHGV-1357406_58	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1357406_59	phrog_88	79.3	4.4e-23	major tail protein	tail
UniRef90	UHGV-1357406_59	UniRef90_UPI0018771F27	134.0	5.33e-36	phage tail protein	N/A
eggNOG-mapper	UHGV-1357406_59	33035.JPJF01000039_gene278	77.4	0.00000000000000855	N/A	N/A
structural_annotation	UHGV-1357406_59	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1357406	Yes	33,338	55	100	1
UHGV-0190747	No	32,309	55	100	1
UHGV-2041325	No	32,309	55	100	1
UHGV-1512153	No	34,479	55	100	1
UHGV-0231603	No	31,416	55	95	1
UHGV-0311236	No	31,036	55	94	1
UHGV-0098378	No	27,060	55	82	1
UHGV-1466570	No	21,538	55	65	1
UHGV-1461595	No	20,454	55	62	1
UHGV-0037392	No	18,710	55	57	1
UHGV-1395540	No	17,044	55	52	1
UHGV-0132456	No	16,444	55	50	1